Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq22 219 4e-52
seq180 93.3 4e-14
seq59797 82.4 8e-11
>seq22
Length=933496
Score = 219 bits (242), Expect = 4e-52
Identities = 476/706 (67%), Gaps = 10/706 (1%)
Strand=Plus/Minus
Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT--AAGTCGT 16093
|||||| |||||||| ||||| | | |||||| | |||||| || || || || ||
Sbjct 329799 ATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATCAAATTC-- 329742
Query 16094 ACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCG 16153
|| || | || | ||||| |||| |||||| || ||| ||||| |||||| ||
Sbjct 329741 ACAGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGCAATGATTTCA 329682
Query 16154 GTGGCTCGTGTTTC-AGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTC 16212
| || || | | || | || | ||||||| ||||| || || || || ||
Sbjct 329681 ATAATACG-GTCCCTACTTGGCTTCTGAATGAGGTGTTGGAACATCAGGCAAGCAAAATC 329623
Query 16213 GCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTT 16272
|||||||| ||||||||| || || || || || || || || || || ||||||
Sbjct 329622 GCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCAGGCATTAG 329563
Query 16273 TCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAAC 16332
|| |||||||| | ||| || || | |||||| || |||||| || || |||||
Sbjct 329562 GCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATGCCTTCAAC 329503
Query 16333 AGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTT--ATTACGAATCCATTTC 16390
| ||||| || |||| ||||| | | | || ||| || | |||||| |
Sbjct 329502 CGCGGCAAATGCTATTATACGTTCGCCAAAGTTGGCCGATTTCGATGA--AATCCACGCC 329445
Query 16391 TGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTC 16450
|| |||| || || || | || | | | |||||| || || || || ||||| |
Sbjct 329444 AGTGCCCAATCAGCCTTGCGCTTAACAGCAGGCATCGTCTCAATAGCATTGAACAAGTAA 329385
Query 16451 TCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGT 16510
|| ||| || ||| | ||||| |||||||| | || ||||||||||| || ||
Sbjct 329384 TCCCTTTGCTTGCCATCCTTAATATATGTATCAATTAATATGCTGTACATTTCAGAATGC 329325
Query 16511 ATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCC 16570
| ||||| ||||| || ||||||||||||||||| || ||||| | ||||| |||||
Sbjct 329324 ACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGATTTGAACTTCT 329265
Query 16571 ACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCC 16630
| || ||||| | | ||| |||||||| ||||| || || ||||| || |||
Sbjct 329264 TGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGGCAAAGAATGCC 329205
Query 16631 AATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCT 16690
|| | |||| |||||||| ||| | || ||| |||||| | | ||||
Sbjct 329204 AAAACGTGCGAAATGAAATGGCGTTCATTGTCGGTGAGACGCGCCCAATCATCCATATCT 329145
Query 16691 TTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736
||||| | || || ||||| |||||| ||| || ||||||
Sbjct 329144 TTGGAAAGGTCAACCTCTTCCACCGTCCAGAAGGATGCTTCTGCCT 329099
>seq180
Length=417715
Score = 93.3 bits (102), Expect = 4e-14
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 119014 CCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTATCGTTTAAGTAGATACAG 119073
|| || || ||||| ||||| ||| ||||| ||| || || || |||||||||
Sbjct 110479 CCTACATAGCCGTTTGGATCCCGTCCATCTAAACTGTATTTGTCATTCAAGTAGATAGCA 110420
Query 119074 ACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGTACATA 119133
| ||| || |||||| || |||||| ||||| ||||| |||||||||||
Sbjct 110419 ATTTCTAAGGCTTGTTCCGGCGTAGCGGCCCATTCAAGTATCTTTTTTGCCCAGTACATG 110360
Query 119134 CGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAAGTTGTGCGGTGTTCCATAGA 119193
|||| | | || |||||||| || || || || |||| ||||| | ||||| |||
Sbjct 110359 CGTAGAAAACCATGCATTTTGCCTTCATTTGCCAATTGAACCTGTGCCGCATTCCAAAGA 110300
Query 119194 GGATCGTGTGTACGGGCGTGTTCTAA 119219
||||||||| |||| || || ||
Sbjct 110299 TCATCGTGTGTGTGGGCCTGCTCGAA 110274
Score = 86.0 bits (94), Expect = 6e-12
Identities = 146/208 (70%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 119014 CCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTATCGTTTAAGTAGATACAG 119073
|| ||||| ||||| |||||| ||| ||||| || ||||| || || ||| | |
Sbjct 107754 CCTACGTAGCCGTTCGGATCTCGTCCATCTAAACTATATTTATCATTAAAA-AGA-ATGG 107697
Query 119074 ACGCTT--AACGCACTTTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGTACA 119131
| || | || |||| || || | |||||||| ||| ||||| ||||| ||||
Sbjct 107696 CGGTTTCTAGAGCCATTTCGGGTGTAGCAGACCATTCCAATATCTTTTTCGCCCAATACA 107637
Query 119132 TACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAAGTTGTGCGGTGTTCCATA 119191
| || | | | ||||||||||| || ||| || || ||||| ||||| | ||||| |
Sbjct 107636 TGCGCAGAAATCCGTGCATTTTGCCTTCGCGAACCAACTGAATCTGTGCAGCATTCCAAA 107577
Query 119192 GAGGATCGTGTGTACGGGCGTGTTCTAA 119219
|| |||||| ||||| || || || ||
Sbjct 107576 GATCATCGTGCGTACGCGCCTGCTCGAA 107549
>seq59797
Length=1646
Score = 82.4 bits (90), Expect = 8e-11
Identities = 126/178 (71%), Gaps = 4/178 (2%)
Strand=Plus/Minus
Query 16472 ATATACGTATCAATCAGTAAACTG--TACATTTCTGAGTGTATGTTCTCTATGGCTATCT 16529
|| || |||||||||| ||| || || | || |||||||| ||||| || ||||
Sbjct 1352 ATGTAGGTATCAATCA--AAAGTGAGTAAGTCTCGGAGTGTATATTCTCCATCATAATCT 1295
Query 16530 GAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCA 16589
| || || ||||| |||| || || || | ||||| || | | |||| ||| |
Sbjct 1294 GGAAACCGTAGAAACATCTTGCTTCTGCGAGCTGTACCTCGGAGGAGAATCTTTCGAGTA 1235
Query 16590 GGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647
|||||||||| || ||||||||| ||| || || || || |||| || |||||||
Sbjct 1234 GGTTCTCATTGACAATACCGTCAGATGCGGCGAAGAATGCTAATACATGACTAATGAA 1177
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 510860346424400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |