Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq22 219 4e-52 seq180 93.3 4e-14 seq59797 82.4 8e-11 >seq22 Length=933496 Score = 219 bits (242), Expect = 4e-52 Identities = 476/706 (67%), Gaps = 10/706 (1%) Strand=Plus/Minus Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT--AAGTCGT 16093 |||||| |||||||| ||||| | | |||||| | |||||| || || || || || Sbjct 329799 ATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATCAAATTC-- 329742 Query 16094 ACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCG 16153 || || | || | ||||| |||| |||||| || ||| ||||| |||||| || Sbjct 329741 ACAGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGCAATGATTTCA 329682 Query 16154 GTGGCTCGTGTTTC-AGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTC 16212 | || || | | || | || | ||||||| ||||| || || || || || Sbjct 329681 ATAATACG-GTCCCTACTTGGCTTCTGAATGAGGTGTTGGAACATCAGGCAAGCAAAATC 329623 Query 16213 GCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTT 16272 |||||||| ||||||||| || || || || || || || || || || |||||| Sbjct 329622 GCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCAGGCATTAG 329563 Query 16273 TCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAAC 16332 || |||||||| | ||| || || | |||||| || |||||| || || ||||| Sbjct 329562 GCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATGCCTTCAAC 329503 Query 16333 AGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTT--ATTACGAATCCATTTC 16390 | ||||| || |||| ||||| | | | || ||| || | |||||| | Sbjct 329502 CGCGGCAAATGCTATTATACGTTCGCCAAAGTTGGCCGATTTCGATGA--AATCCACGCC 329445 Query 16391 TGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTC 16450 || |||| || || || | || | | | |||||| || || || || ||||| | Sbjct 329444 AGTGCCCAATCAGCCTTGCGCTTAACAGCAGGCATCGTCTCAATAGCATTGAACAAGTAA 329385 Query 16451 TCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGT 16510 || ||| || ||| | ||||| |||||||| | || ||||||||||| || || Sbjct 329384 TCCCTTTGCTTGCCATCCTTAATATATGTATCAATTAATATGCTGTACATTTCAGAATGC 329325 Query 16511 ATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCC 16570 | ||||| ||||| || ||||||||||||||||| || ||||| | ||||| ||||| Sbjct 329324 ACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGATTTGAACTTCT 329265 Query 16571 ACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCC 16630 | || ||||| | | ||| |||||||| ||||| || || ||||| || ||| Sbjct 329264 TGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGGCAAAGAATGCC 329205 Query 16631 AATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCT 16690 || | |||| |||||||| ||| | || ||| |||||| | | |||| Sbjct 329204 AAAACGTGCGAAATGAAATGGCGTTCATTGTCGGTGAGACGCGCCCAATCATCCATATCT 329145 Query 16691 TTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736 ||||| | || || ||||| |||||| ||| || |||||| Sbjct 329144 TTGGAAAGGTCAACCTCTTCCACCGTCCAGAAGGATGCTTCTGCCT 329099 >seq180 Length=417715 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 119014 CCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTATCGTTTAAGTAGATACAG 119073 || || || ||||| ||||| ||| ||||| ||| || || || ||||||||| Sbjct 110479 CCTACATAGCCGTTTGGATCCCGTCCATCTAAACTGTATTTGTCATTCAAGTAGATAGCA 110420 Query 119074 ACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGTACATA 119133 | ||| || |||||| || |||||| ||||| ||||| ||||||||||| Sbjct 110419 ATTTCTAAGGCTTGTTCCGGCGTAGCGGCCCATTCAAGTATCTTTTTTGCCCAGTACATG 110360 Query 119134 CGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAAGTTGTGCGGTGTTCCATAGA 119193 |||| | | || |||||||| || || || || |||| ||||| | ||||| ||| Sbjct 110359 CGTAGAAAACCATGCATTTTGCCTTCATTTGCCAATTGAACCTGTGCCGCATTCCAAAGA 110300 Query 119194 GGATCGTGTGTACGGGCGTGTTCTAA 119219 ||||||||| |||| || || || Sbjct 110299 TCATCGTGTGTGTGGGCCTGCTCGAA 110274 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 119014 CCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTATCGTTTAAGTAGATACAG 119073 || ||||| ||||| |||||| ||| ||||| || ||||| || || ||| | | Sbjct 107754 CCTACGTAGCCGTTCGGATCTCGTCCATCTAAACTATATTTATCATTAAAA-AGA-ATGG 107697 Query 119074 ACGCTT--AACGCACTTTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGTACA 119131 | || | || |||| || || | |||||||| ||| ||||| ||||| |||| Sbjct 107696 CGGTTTCTAGAGCCATTTCGGGTGTAGCAGACCATTCCAATATCTTTTTCGCCCAATACA 107637 Query 119132 TACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAAGTTGTGCGGTGTTCCATA 119191 | || | | | ||||||||||| || ||| || || ||||| ||||| | ||||| | Sbjct 107636 TGCGCAGAAATCCGTGCATTTTGCCTTCGCGAACCAACTGAATCTGTGCAGCATTCCAAA 107577 Query 119192 GAGGATCGTGTGTACGGGCGTGTTCTAA 119219 || |||||| ||||| || || || || Sbjct 107576 GATCATCGTGCGTACGCGCCTGCTCGAA 107549 >seq59797 Length=1646 Score = 82.4 bits (90), Expect = 8e-11 Identities = 126/178 (71%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTG--TACATTTCTGAGTGTATGTTCTCTATGGCTATCT 16529 || || |||||||||| ||| || || | || |||||||| ||||| || |||| Sbjct 1352 ATGTAGGTATCAATCA--AAAGTGAGTAAGTCTCGGAGTGTATATTCTCCATCATAATCT 1295 Query 16530 GAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCA 16589 | || || ||||| |||| || || || | ||||| || | | |||| ||| | Sbjct 1294 GGAAACCGTAGAAACATCTTGCTTCTGCGAGCTGTACCTCGGAGGAGAATCTTTCGAGTA 1235 Query 16590 GGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 |||||||||| || ||||||||| ||| || || || || |||| || ||||||| Sbjct 1234 GGTTCTCATTGACAATACCGTCAGATGCGGCGAAGAATGCTAATACATGACTAATGAA 1177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510860346424400