Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_001317.1
Length=30624
Score E
Sequences producing significant alignments: (Bits) Value
seq52999 511 9e-141
seq69575 80.6 5e-11
>seq52999
Length=1923
Score = 511 bits (566), Expect = 9e-141
Identities = 981/1428 (69%), Gaps = 31/1428 (2%)
Strand=Plus/Minus
Query 2116 TGGTTTTGCGGATGGACATAAACGACTGCGTGACGTCG--GTTGCTCCGGCGTCGTACTC 2173
||| ||||||||| |||||||| ||||||| || |||| || ||| |||||| ||||
Sbjct 1524 TGGCTTTGCGGATAGACATAAATGACTGCGCGATGTCGAGGTGGCT--GGCGTCAAACTC 1467
Query 2174 CAGACAGCCGC-GGCGAATGGTGTCTTTTGCCTTGAGTACCATTGCGGTTTTCATTTCAG 2232
||| | |||| ||||| ||||||| | ||||| || |||| ||| |||||| | |
Sbjct 1466 CAGCCGCCCGCTGGCGA-TGGTGTCGTAAGCCTTCAGCACCAGGGCGTTTTTCACGTTCG 1408
Query 2233 GCGTGTA-ACGGATGCCGCGTGCGGCCGGGTAGAATGAGCGCACCAACTGGAACACGCCG 2291
| | || || | || | || ||| |||| | || || | | |||||
Sbjct 1407 GGTTATAGACAAACTCCTTCACCTGC-GGGAAGAAGGCTTTGACATTCTCGTATACGCCA 1349
Query 2292 AGGCCGAGGCCGGTTGCGTCAATGCCGATGTATTCGACGCTGTATTTCTCGGTCAGTTTG 2351
|| |||| |||||| | ||| |||||||| || |||| | || | || ||||| |
Sbjct 1348 AGCCCGACGCCGGTGGAGTCGATGCCGATATAGGTGACGTTATACTGCTGCGTCAGCGTC 1289
Query 2352 CGGATGCCATCTGCCTGCGCGGCAAAGTCCATGCCCTTCCACTGGTGGCGCTCCAGCATG 2411
| |||| | || |||||||| |||||||| || ||||||||| ||||| || |||
Sbjct 1288 CTGATGGCGTCAGCCTGCGCCCGGAAGTCCATCCCGCGCCACTGGTGACGCTCAAGGATG 1229
Query 2412 CGGAACTTGCCACCAGAAACCACCGGCGGCGCGAGCACGACGCACCCGGCGCTGTCGCCA 2471
||||||||||| || | || | ||||| || | || ||||| ||||||||||||||
Sbjct 1228 CGGAACTTGCCGCCCGGCACGGCAGGCGGTGCCATGACCACGCATCCGGCGCTGTCGCCG 1169
Query 2472 GTGTGTGAC---------GGGTCGTAGCCAATCCAGACGGGGCGAGAGCCGAACGGATGG 2522
| || | ||||||||||| ||||| || |||||||||| |
Sbjct 1168 TTCTGCGTTCCCTTCGCGGGGTCGTAGCCGATCCACACTTCTTTCCAGCCGAACGGGCGC 1109
Query 2523 TCGGCGAACGGGGCGAAGTCCTCCCATTCTTCCATCACGTCGACCATGCAGCGCTGCAGC 2582
|| | || | ||||| ||| ||||| ||| |||||||| |||||||
Sbjct 1108 AGCGCCAGCGCCTCAAAGTCGGTCCAGACTTCCCAGCTGTCCACCATGCATTTCTGCAGC 1049
Query 2583 TCCTCGAACGGGAATACCGACGCTTTATCGTCGACAAACTCGCACATAAACAGGTTTTTA 2642
| | | ||||||||||||| |||||| | ||| ||||||| | |||||| |
Sbjct 1048 ATGGCCAGCTGGAATACCGACGCCAGATCGTCCATAAAGACGCACATCAGCAGGTTCTGG 989
Query 2643 AAGTCCTCATCACTGTTTTCGCGTTTG-AGTTGGTCGAGGTCGAACAGGGTGCAGCCACC 2701
| ||||| |||| ||||| | || || || ||||| |||||| ||||| ||
Sbjct 988 TAATCCTCCGGGCTGTAG-CGCGTGCGCAGCTGCTCCAGGTCAAACAGGTCACAGCCGCC 930
Query 2702 GGCAAGGGCGTCCTCAATGGTGACAATCTGCCGCCACTGGCCATCGTCGCAGAGCTGGCC 2761
| | || || |||| |||||| ||||| || ||||||| || |||||||| | ||
Sbjct 929 GCGCACCGCATCTTCAACGGTGACGATCTGGCGAAACTGGCCGTCTTCGCAGAGGCGACC 870
Query 2762 ACCGGCGAGCGCGCGGTGACTGATGTCAATTTCGATGCGGTCGGCAATACGGCTGCGCCC 2821
|||| || | | || |||| |||||| || | ||||| || | ||| || ||
Sbjct 869 GGCGGCCAGTGACTGATGGCTGAGGTCAATATCAACCCGGTCAGCTTT--GGCC-CGGCC 813
Query 2822 CTTGTTGAACAGCTCGCCAGACCAGAAGGGATAAGCGCCGTGCGCCAGCGTTGAGGGTGT 2881
|||||||||| || || |||||||| ||||| |||| ||||| || | || || ||
Sbjct 812 CTTGTTGAACTGCGAACCGGACCAGAACGGATAGGCGCTGTGCGTGAGGCTGGACGGGGT 753
Query 2882 CGAAAAGTAGGTTGAGCGCAGATGCTTCTGCGAGGCCATGCCCGAGGCGACTTTGCGCAG 2941
|||||||||||| |||| | ||| ||| |||||||| || || ||||| ||||
Sbjct 752 GGAAAAGTAGGTTTCGCGCCACTTCTTGTGCAGCGCCATGCCGGACGCCACTTTCTGCAG 693
Query 2942 CTTCTGAAAATTCGGGATCCAGAATATTTCATCGACATACAGGTCGCCGTTATGGCTCTG 3001
| |||||| |||||||||||||| |||||| | ||||| | ||||| || ||||||
Sbjct 692 TTCCTGAAACTTCGGGATCCAGAAATATTCATCCAGGTACAGATTGCCGTGATAGCTCTG 633
Query 3002 AGCCGTGTTGGAGTTGGTACCGAGAAAAATCAGCTTTGCGCCGTTGTTGCCAATGACAAT 3061
|| ||| || |||||| || || ||| ||| || ||||| || | | | ||
Sbjct 632 CGCGGTGCGGGCGTTGGTGCCCAGGAAATACAGGCACGCACCGTTACTG--AGCGTC-AT 576
Query 3062 CGGGTCGCCGGTCAGGTCGACGTCAACCAGTCGCGCAAACTGTATGATGTATTCGCGGAA 3121
||||||||| ||||||| ||||| ||| || ||||| | |||||||| | |||
Sbjct 575 CGGGTCGCCCTTCAGGTCTACGTCCACCTCGCGGGCAAATTCAATGATGTACTGCTTGAA 516
Query 3122 CACGTAAGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGGCCGGTCTTGAGTGC 3181
|||| ||||||| |||||||| || || || ||||| || | ||||| | || ||
Sbjct 515 GACGTGCGCCTGCGCCTTACTGGCTGAAAGGAATATCTGATTGCGCCCGGTGGTCAGCGC 456
Query 3182 -TCGCAGCAGTGCCTCACGGGAAAAATAGAACGTCGCGCCAATCTGGCGGGATTTGAGAA 3240
||| | ||| ||||| |||| |||| |||| || || ||||||||||| || || || |
Sbjct 455 ATCG-ATCAGCGCCTCGCGGGCAAAAAAGAAGGTGGCCCCAATCTGGCGCGACTTCAGCA 397
Query 3241 TGTCGCGAATACGGTGTGCCAGT--CCTGCGCGGTACCACTGCAACTGGTACTCGAAAGA 3298
|| ||| |||| || | | || || ||||||| |||||| ||||
Sbjct 396 GGTTGCG--GACGGAGTACTTATTCCCGGCCTCCCACCACTGGCGCTGGTAGCCGAACAT 339
Query 3299 CTGGTCGAAAAATAATTCCTCCAGCTTTTCGATAGCCTCGTCGCTGAAAAAATTCTTTTT 3358
| | || || | |||| |||||| || || ||||||||||| | |||||||
Sbjct 338 CGAGCCGTGGAAAACCTCCTGCAGCTTCTCAATCTGTTCGTCGCTGAACAGGTTCTTTTC 279
Query 3359 CGGCTTCTTGCGCTCACCCTTGTTGCGGTTGGCGACGTTGGGGTTAAGGTCGGCCTCGTT 3418
||| ||| ||| |||||||||||||| | ||||| || || ||||| || || ||
Sbjct 278 CGGGGGCTTACGCGGGCCCTTGTTGCGGTTCTCCACGTTCGGATTCAGGTCCGCTTCATT 219
Query 3419 GCCGGTCTGGCTGTAGCGGTTAACGCGTGCCAGTCGTTCAATCTGCCGCCCGAGCAGGTC 3478
|||| | |||| | | | || || | || || ||||||| | ||||||||
Sbjct 218 GCCGCCATTGCTGAATTTGCCGATCCGGGCATGGCGCTCGGACTGCCGCGCCAGCAGGTC 159
Query 3479 AATCTCTTTGAAGTCACCGCCTGACTTTTGCGGCTTGGCGATGAGCTG 3526
|| || |||||||| ||| ||| ||| ||| |||||||||
Sbjct 158 GATTTCCTTGAAGTCCTTTCCTTCCTTCTGCTCCTTCATGATGAGCTG 111
>seq69575
Length=1340
Score = 80.6 bits (88), Expect = 5e-11
Identities = 103/142 (73%), Gaps = 9/142 (6%)
Strand=Plus/Plus
Query 2374 CAAAGTCCATGCCCTTCCACTGGTGGCGCTCCAGCATGCGGAACTTGCCACCAGAAACCA 2433
|||| |||||||| | |||||| ||||| | | |||||| ||||| || | ||||
Sbjct 138 CAAACTCCATGCCGCGCAGCTGGTGACGCTCGATTACGCGGAATTTGCCGCCGGGTACCA 197
Query 2434 CCGGCGGCGCGAGCACGACGCACCCGGCGCTGTCGCCAGTG----TGTGAC-----GGGT 2484
|||||||| ||| | ||| |||||||||||||| || ||| || || |
Sbjct 198 GCGGCGGCGAGAGGATGACAAGACCGGCGCTGTCGCCTTTGTCACTGTTACCGTTGGGAT 257
Query 2485 CGTAGCCAATCCAGACGGGGCG 2506
|||| ||||||||||| |||||
Sbjct 258 CGTACCCAATCCAGACAGGGCG 279
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 97774466232440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |