Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_001317.1 Length=30624 Score E Sequences producing significant alignments: (Bits) Value seq52999 511 9e-141 seq69575 80.6 5e-11 >seq52999 Length=1923 Score = 511 bits (566), Expect = 9e-141 Identities = 981/1428 (69%), Gaps = 31/1428 (2%) Strand=Plus/Minus Query 2116 TGGTTTTGCGGATGGACATAAACGACTGCGTGACGTCG--GTTGCTCCGGCGTCGTACTC 2173 ||| ||||||||| |||||||| ||||||| || |||| || ||| |||||| |||| Sbjct 1524 TGGCTTTGCGGATAGACATAAATGACTGCGCGATGTCGAGGTGGCT--GGCGTCAAACTC 1467 Query 2174 CAGACAGCCGC-GGCGAATGGTGTCTTTTGCCTTGAGTACCATTGCGGTTTTCATTTCAG 2232 ||| | |||| ||||| ||||||| | ||||| || |||| ||| |||||| | | Sbjct 1466 CAGCCGCCCGCTGGCGA-TGGTGTCGTAAGCCTTCAGCACCAGGGCGTTTTTCACGTTCG 1408 Query 2233 GCGTGTA-ACGGATGCCGCGTGCGGCCGGGTAGAATGAGCGCACCAACTGGAACACGCCG 2291 | | || || | || | || ||| |||| | || || | | ||||| Sbjct 1407 GGTTATAGACAAACTCCTTCACCTGC-GGGAAGAAGGCTTTGACATTCTCGTATACGCCA 1349 Query 2292 AGGCCGAGGCCGGTTGCGTCAATGCCGATGTATTCGACGCTGTATTTCTCGGTCAGTTTG 2351 || |||| |||||| | ||| |||||||| || |||| | || | || ||||| | Sbjct 1348 AGCCCGACGCCGGTGGAGTCGATGCCGATATAGGTGACGTTATACTGCTGCGTCAGCGTC 1289 Query 2352 CGGATGCCATCTGCCTGCGCGGCAAAGTCCATGCCCTTCCACTGGTGGCGCTCCAGCATG 2411 | |||| | || |||||||| |||||||| || ||||||||| ||||| || ||| Sbjct 1288 CTGATGGCGTCAGCCTGCGCCCGGAAGTCCATCCCGCGCCACTGGTGACGCTCAAGGATG 1229 Query 2412 CGGAACTTGCCACCAGAAACCACCGGCGGCGCGAGCACGACGCACCCGGCGCTGTCGCCA 2471 ||||||||||| || | || | ||||| || | || ||||| |||||||||||||| Sbjct 1228 CGGAACTTGCCGCCCGGCACGGCAGGCGGTGCCATGACCACGCATCCGGCGCTGTCGCCG 1169 Query 2472 GTGTGTGAC---------GGGTCGTAGCCAATCCAGACGGGGCGAGAGCCGAACGGATGG 2522 | || | ||||||||||| ||||| || |||||||||| | Sbjct 1168 TTCTGCGTTCCCTTCGCGGGGTCGTAGCCGATCCACACTTCTTTCCAGCCGAACGGGCGC 1109 Query 2523 TCGGCGAACGGGGCGAAGTCCTCCCATTCTTCCATCACGTCGACCATGCAGCGCTGCAGC 2582 || | || | ||||| ||| ||||| ||| |||||||| ||||||| Sbjct 1108 AGCGCCAGCGCCTCAAAGTCGGTCCAGACTTCCCAGCTGTCCACCATGCATTTCTGCAGC 1049 Query 2583 TCCTCGAACGGGAATACCGACGCTTTATCGTCGACAAACTCGCACATAAACAGGTTTTTA 2642 | | | ||||||||||||| |||||| | ||| ||||||| | |||||| | Sbjct 1048 ATGGCCAGCTGGAATACCGACGCCAGATCGTCCATAAAGACGCACATCAGCAGGTTCTGG 989 Query 2643 AAGTCCTCATCACTGTTTTCGCGTTTG-AGTTGGTCGAGGTCGAACAGGGTGCAGCCACC 2701 | ||||| |||| ||||| | || || || ||||| |||||| ||||| || Sbjct 988 TAATCCTCCGGGCTGTAG-CGCGTGCGCAGCTGCTCCAGGTCAAACAGGTCACAGCCGCC 930 Query 2702 GGCAAGGGCGTCCTCAATGGTGACAATCTGCCGCCACTGGCCATCGTCGCAGAGCTGGCC 2761 | | || || |||| |||||| ||||| || ||||||| || |||||||| | || Sbjct 929 GCGCACCGCATCTTCAACGGTGACGATCTGGCGAAACTGGCCGTCTTCGCAGAGGCGACC 870 Query 2762 ACCGGCGAGCGCGCGGTGACTGATGTCAATTTCGATGCGGTCGGCAATACGGCTGCGCCC 2821 |||| || | | || |||| |||||| || | ||||| || | ||| || || Sbjct 869 GGCGGCCAGTGACTGATGGCTGAGGTCAATATCAACCCGGTCAGCTTT--GGCC-CGGCC 813 Query 2822 CTTGTTGAACAGCTCGCCAGACCAGAAGGGATAAGCGCCGTGCGCCAGCGTTGAGGGTGT 2881 |||||||||| || || |||||||| ||||| |||| ||||| || | || || || Sbjct 812 CTTGTTGAACTGCGAACCGGACCAGAACGGATAGGCGCTGTGCGTGAGGCTGGACGGGGT 753 Query 2882 CGAAAAGTAGGTTGAGCGCAGATGCTTCTGCGAGGCCATGCCCGAGGCGACTTTGCGCAG 2941 |||||||||||| |||| | ||| ||| |||||||| || || ||||| |||| Sbjct 752 GGAAAAGTAGGTTTCGCGCCACTTCTTGTGCAGCGCCATGCCGGACGCCACTTTCTGCAG 693 Query 2942 CTTCTGAAAATTCGGGATCCAGAATATTTCATCGACATACAGGTCGCCGTTATGGCTCTG 3001 | |||||| |||||||||||||| |||||| | ||||| | ||||| || |||||| Sbjct 692 TTCCTGAAACTTCGGGATCCAGAAATATTCATCCAGGTACAGATTGCCGTGATAGCTCTG 633 Query 3002 AGCCGTGTTGGAGTTGGTACCGAGAAAAATCAGCTTTGCGCCGTTGTTGCCAATGACAAT 3061 || ||| || |||||| || || ||| ||| || ||||| || | | | || Sbjct 632 CGCGGTGCGGGCGTTGGTGCCCAGGAAATACAGGCACGCACCGTTACTG--AGCGTC-AT 576 Query 3062 CGGGTCGCCGGTCAGGTCGACGTCAACCAGTCGCGCAAACTGTATGATGTATTCGCGGAA 3121 ||||||||| ||||||| ||||| ||| || ||||| | |||||||| | ||| Sbjct 575 CGGGTCGCCCTTCAGGTCTACGTCCACCTCGCGGGCAAATTCAATGATGTACTGCTTGAA 516 Query 3122 CACGTAAGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGGCCGGTCTTGAGTGC 3181 |||| ||||||| |||||||| || || || ||||| || | ||||| | || || Sbjct 515 GACGTGCGCCTGCGCCTTACTGGCTGAAAGGAATATCTGATTGCGCCCGGTGGTCAGCGC 456 Query 3182 -TCGCAGCAGTGCCTCACGGGAAAAATAGAACGTCGCGCCAATCTGGCGGGATTTGAGAA 3240 ||| | ||| ||||| |||| |||| |||| || || ||||||||||| || || || | Sbjct 455 ATCG-ATCAGCGCCTCGCGGGCAAAAAAGAAGGTGGCCCCAATCTGGCGCGACTTCAGCA 397 Query 3241 TGTCGCGAATACGGTGTGCCAGT--CCTGCGCGGTACCACTGCAACTGGTACTCGAAAGA 3298 || ||| |||| || | | || || ||||||| |||||| |||| Sbjct 396 GGTTGCG--GACGGAGTACTTATTCCCGGCCTCCCACCACTGGCGCTGGTAGCCGAACAT 339 Query 3299 CTGGTCGAAAAATAATTCCTCCAGCTTTTCGATAGCCTCGTCGCTGAAAAAATTCTTTTT 3358 | | || || | |||| |||||| || || ||||||||||| | ||||||| Sbjct 338 CGAGCCGTGGAAAACCTCCTGCAGCTTCTCAATCTGTTCGTCGCTGAACAGGTTCTTTTC 279 Query 3359 CGGCTTCTTGCGCTCACCCTTGTTGCGGTTGGCGACGTTGGGGTTAAGGTCGGCCTCGTT 3418 ||| ||| ||| |||||||||||||| | ||||| || || ||||| || || || Sbjct 278 CGGGGGCTTACGCGGGCCCTTGTTGCGGTTCTCCACGTTCGGATTCAGGTCCGCTTCATT 219 Query 3419 GCCGGTCTGGCTGTAGCGGTTAACGCGTGCCAGTCGTTCAATCTGCCGCCCGAGCAGGTC 3478 |||| | |||| | | | || || | || || ||||||| | |||||||| Sbjct 218 GCCGCCATTGCTGAATTTGCCGATCCGGGCATGGCGCTCGGACTGCCGCGCCAGCAGGTC 159 Query 3479 AATCTCTTTGAAGTCACCGCCTGACTTTTGCGGCTTGGCGATGAGCTG 3526 || || |||||||| ||| ||| ||| ||| ||||||||| Sbjct 158 GATTTCCTTGAAGTCCTTTCCTTCCTTCTGCTCCTTCATGATGAGCTG 111 >seq69575 Length=1340 Score = 80.6 bits (88), Expect = 5e-11 Identities = 103/142 (73%), Gaps = 9/142 (6%) Strand=Plus/Plus Query 2374 CAAAGTCCATGCCCTTCCACTGGTGGCGCTCCAGCATGCGGAACTTGCCACCAGAAACCA 2433 |||| |||||||| | |||||| ||||| | | |||||| ||||| || | |||| Sbjct 138 CAAACTCCATGCCGCGCAGCTGGTGACGCTCGATTACGCGGAATTTGCCGCCGGGTACCA 197 Query 2434 CCGGCGGCGCGAGCACGACGCACCCGGCGCTGTCGCCAGTG----TGTGAC-----GGGT 2484 |||||||| ||| | ||| |||||||||||||| || ||| || || | Sbjct 198 GCGGCGGCGAGAGGATGACAAGACCGGCGCTGTCGCCTTTGTCACTGTTACCGTTGGGAT 257 Query 2485 CGTAGCCAATCCAGACGGGGCG 2506 |||| ||||||||||| ||||| Sbjct 258 CGTACCCAATCCAGACAGGGCG 279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97774466232440