Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq81517 147 2e-30
>seq81517
Length=1088
Score = 147 bits (162), Expect = 2e-30
Identities = 328/486 (67%), Gaps = 11/486 (2%)
Strand=Plus/Plus
Query 101676 TTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACT 101735
||||||| | ||||| |||| ||||| || ||||| || | ||| || | || |
Sbjct 471 TTTTAAGGGT-TCAATATGATTGTTATAGACATGGGCATCACCAAGAGTGTGCACGAATT 529
Query 101736 CTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAA 101795
|||| || || || || || |||||||| | ||||| | || ||| || |
Sbjct 530 CTCCGGGACGAAGTCCGGTCACGTGTGCAATCATATATGTTAACAAAGCATAAGAGGCGA 589
Query 101796 TGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCT 101855
| || |||||||| || || ||||| ||||| | |||||||| ||||| || ||||
Sbjct 590 TATTGAATGGCACGCCCAATCCCATGTCAGCGCTACGTTGATACAACTGACAAGACAGCT 649
Query 101856 TTCCATCACAGACATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAA 101915
|||| || ||||||| || ||||||||| || | |||||| ||||
Sbjct 650 CACCATTTGCAACGAAAAATTGTGCTAGACAATGACAAGGAGGTAGTGCCATTTGCGGAA 709
Query 101916 TGTCTGAAACATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTT-ATA 101974
|||| |||||| ||| |||||| || | | ||| | || ||||||| ||
Sbjct 710 TGTCAAGGGGATTCCACGCAGACATTATTATGCGACGATCATTCGG-TTTGTTTCGGATT 768
Query 101975 GTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTCCT---TTATAATCGCGCCCAACA 102031
|||||||| | | || | ||| || || ||||| || | || |||| | |
Sbjct 769 GTATCAATTACATTTTGAAGTTGATCTACGCCTTCACCCGAGTAATTATCGTTGC----A 824
Query 102032 CCTTT-ATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCC 102090
|| ||||| ||||| ||||| | |||||||||||||||||| || || | ||| ||
Sbjct 825 TGTTCGATATTTGGCTCCAAAATGGCGCCACTGAAATCCATACACGGGGCCCAAATCACC 884
Query 102091 TTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCA 102150
||| || | | || ||||||| |||||| ||||| || || | |||| | |||||
Sbjct 885 TTCTTCGCGATTATGAAAACCACATTTATCCAAAAACTCTCGAGTACTATTCCCGTCCCA 944
Query 102151 AATGTG 102156
||||||
Sbjct 945 AATGTG 950
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 360869613744170
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |