Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq81517 147 2e-30 >seq81517 Length=1088 Score = 147 bits (162), Expect = 2e-30 Identities = 328/486 (67%), Gaps = 11/486 (2%) Strand=Plus/Plus Query 101676 TTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACT 101735 ||||||| | ||||| |||| ||||| || ||||| || | ||| || | || | Sbjct 471 TTTTAAGGGT-TCAATATGATTGTTATAGACATGGGCATCACCAAGAGTGTGCACGAATT 529 Query 101736 CTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAA 101795 |||| || || || || || |||||||| | ||||| | || ||| || | Sbjct 530 CTCCGGGACGAAGTCCGGTCACGTGTGCAATCATATATGTTAACAAAGCATAAGAGGCGA 589 Query 101796 TGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCT 101855 | || |||||||| || || ||||| ||||| | |||||||| ||||| || |||| Sbjct 590 TATTGAATGGCACGCCCAATCCCATGTCAGCGCTACGTTGATACAACTGACAAGACAGCT 649 Query 101856 TTCCATCACAGACATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAA 101915 |||| || ||||||| || ||||||||| || | |||||| |||| Sbjct 650 CACCATTTGCAACGAAAAATTGTGCTAGACAATGACAAGGAGGTAGTGCCATTTGCGGAA 709 Query 101916 TGTCTGAAACATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTT-ATA 101974 |||| |||||| ||| |||||| || | | ||| | || ||||||| || Sbjct 710 TGTCAAGGGGATTCCACGCAGACATTATTATGCGACGATCATTCGG-TTTGTTTCGGATT 768 Query 101975 GTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTCCT---TTATAATCGCGCCCAACA 102031 |||||||| | | || | ||| || || ||||| || | || |||| | | Sbjct 769 GTATCAATTACATTTTGAAGTTGATCTACGCCTTCACCCGAGTAATTATCGTTGC----A 824 Query 102032 CCTTT-ATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCC 102090 || ||||| ||||| ||||| | |||||||||||||||||| || || | ||| || Sbjct 825 TGTTCGATATTTGGCTCCAAAATGGCGCCACTGAAATCCATACACGGGGCCCAAATCACC 884 Query 102091 TTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCA 102150 ||| || | | || ||||||| |||||| ||||| || || | |||| | ||||| Sbjct 885 TTCTTCGCGATTATGAAAACCACATTTATCCAAAAACTCTCGAGTACTATTCCCGTCCCA 944 Query 102151 AATGTG 102156 |||||| Sbjct 945 AATGTG 950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360869613744170