Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq13731 558 4e-154
seq22 257 2e-63
seq32170 87.8 2e-12
seq59797 82.4 9e-11
>seq13731
Length=15303
Score = 558 bits (618), Expect = 4e-154
Identities = 1263/1879 (67%), Gaps = 26/1879 (1%)
Strand=Plus/Plus
Query 52798 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 52857
|||||||| || ||||| || | | | || ||||| ||||||| |||||||||||
Sbjct 559 CTTGTCCACAGTAAATTGTATAGCATTTGCAGCAGGTTTGGTACGTAAGTAGTACATTCC 618
Query 52858 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGG 52917
||||||||||| |||| || || ||||| ||| ||||||||| ||| | ||
Sbjct 619 TGTTTTTAGACCCGCTTTCCAGCCATAGAAATGTATAGAAGTTAGTTTGCCATAGTTTGG 678
Query 52918 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 52977
||||| | ||| || || | ||||| ||||| |||||||| ||||||| ||||| ||
Sbjct 679 CTCTGCGACATGTATGTTAAACGATTGGCTTTGGTCGATGAATGCTCCCCGATCTGCTGC 738
Query 52978 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATAT 53036
|||||| || || || | |||||||| | |||||| || | |||| ||| |
Sbjct 739 CATTTTAATTGAAGTTTTAACCGAGATTTCCCATACAGTTTTGTACAGATCGC-GAATGT 797
Query 53037 -CTTCTGGAAGGTTTGTATTC--TGAATAGATCCACCATCTA-CCATAATCCTATTCTTG 53092
|| | | | || || ||| | || || || ||| | ||| ||||| |||| ||
Sbjct 798 GCTGCGGTATGGATTCTATGCCTTGTATGGAGCCA-CGGCTAGTAATAATTTTATTTTTC 856
Query 53093 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 53152
|| ||||||| ||| || ||| || | | | | || | ||| |||| || |||
Sbjct 857 ATGTCATCATCCCACAAACCCAACTCAGTGAGATCGCGCAGCAAATGATGATTTACAACT 916
Query 53153 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 53212
|||||||| ||||| | ||| | || ||||| || ||| || || ||||| | |||
Sbjct 917 TGAAATTCGCCAGAGAGTACGCGACGTGTGTAGATGTTAGAAGTGTAGGGTTCGAATGAC 976
Query 53213 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 53272
|||||||| |||| ||||| |||||||| || || ||||||||||| | || | |
Sbjct 977 TCATTATTGCCCATGATTTGCGCAGTTGAAGCGGTGGGCATAGGTGCAAGCAGGAGGGAA 1036
Query 53273 TTTCTAAGACCGT-ATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA 53331
|| |||| ||| | |||| | ||||| || || | | ||| ||||| || || |
Sbjct 1037 TTCCTAACACCATGCTGTT-TAATTTTCTCCTTCAATTCTGTCCAGTTCCAGAGCTCAGT 1095
Query 53332 CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACAT 53390
|| ||||||||| || || || | | || | ||| |||
Sbjct 1096 GGGCTTCTTATCCCACATGTCATATTGTAGAATTCCCTTGCTAACTGGAC-AGCCTTCAT 1154
Query 53391 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 53450
| || || || | || | |||||||| | ||||||||| || ||||||||||| ||||
Sbjct 1155 AAGTTTCATAGGTACCGTATTTCTCAGCCAATTCACAACTAGCTTCTAATGCACCATAAT 1214
Query 53451 AAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAAT 53510
||||||||||||| | || | ||||| | ||||| ||| || | |||||
Sbjct 1215 AAATGGTTTCGAAAACCTGTTGATTTAAAAGGAATGCTTGTTCGCTTTCGTACGGATAGC 1274
Query 53511 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 53570
| || |||| |||||||| || ||||| || || || ||||| || | |||||
Sbjct 1275 GCATAAGTATAAGAGCGTCTGCAAAACCTTGTACGCCGATCCCGATTGGACGGTGTCTAA 1334
Query 53571 TATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGT 53630
|| || ||| || || || | || || | ||| || || || |||||||| | |
Sbjct 1335 AGTTTGATTTTTTTGCCTCGGGCAATGGGTAGTGATTTATTTCAATGATTTTATTCAAAT 1394
Query 53631 TTC-TGACA-ATTACTTTGACCACATCCTT---CAGTTTGAGAAAATCAAATTGTCCATC 53685
||| || || | | |||| || ||||| | ||| || | | | || | ||
Sbjct 1395 TTCGTGTCACAGT--TTTGGTGACTTCCTTGAGCCGTTGGAAATCGTAAGTTTTTTCAGG 1452
Query 53686 TATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATC 53745
| | |||||||||||||| || || ||||| | || || || || ||||||| || |
Sbjct 1453 TGTGACAAACATGTTCAAAGCGATTGATGCTAAGTTGCATACAGCCACCTCATCAGGTGC 1512
Query 53746 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 53805
| ||||| | || |||||||| ||||| || || || ||||| || | |||||| ||
Sbjct 1513 AGAATATTCGACAATTTCAGTGCATAGATTGCTGCATTTAATGGTGCCAATATTTTGCTG 1572
Query 53806 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTG 53865
|||||| ||| | ||||| |||||||| || | || | || ||||| || || | |||
Sbjct 1573 ATTACTTTTTCTATTACAGGCATCCTTGTACAACATATAAGGTGTACCGGTCTCCACCTG 1632
Query 53866 GGATTCTATAATCGCTTTCCAGACGAC-ACGAGCCTTTATTAT-AGATTTGTATCTCTTT 53923
|||||| || || || ||| | ||| |||| || | | ||| | || ||
Sbjct 1633 GGATTCAATGATGGCGAACCA-AAGACTTTGAGCTTTCACCGTCTTATTAGCGCGTCCTT 1691
Query 53924 TCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCA 53983
|| |||| || |||||| ||| ||| || || || |||||||| | | || |||
Sbjct 1692 CCT-TTTCATACTTTGTATATAATTTTTCGAATTCTTCGCCCCAAACCTCATGTAAGCCA 1750
Query 53984 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 54043
||||||| || ||||||||||| ||||||||||||| | | | ||| |||| ||| ||
Sbjct 1751 GGACATTTATGTGGACACATCAATGACCACTCTCCGTTAGCTTCCACACGTTCCATGAAT 1810
Query 54044 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 54103
| ||| || ||||| | ||| ||||| |||||||| || || || || ||||| |||
Sbjct 1811 AAATCTGGTATCCACAAAGCATAAAATAAATCTCTGGCTCGGTGCTCTTCTTTTCCAGTA 1870
Query 54104 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTC 54163
||||| || | ||| | ||| | | |||||| | |||||| ||||||||||| ||||
Sbjct 1871 TTCTTCTTCAAATCCAAAAACTCAAAAATATCTGCATGCCATGGTTCCAAGTAAATGGCA 1930
Query 54164 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 54223
| | |||||||| ||| || |||||||||| ||| | || |||||| | ||
Sbjct 1931 AAGGCGCCAGGCCGCTTGCCACCACCCTGATCTACGTAACGTGCAACGTTATTGAATACC 1990
Query 54224 CTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTG 54283
| ||||||||| | | |||||| || | ||||| || || | ||| | || |
Sbjct 1991 CGCAACATTGGTACCAAACCATTTGAAGTGCCATTTGTGCCCGCGATTGCTGTGCCCTTT 2050
Query 54284 GCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGC 54341
|| || || | | ||| ||| || || || || || || || ||||| || |
Sbjct 2051 GCTCGTATGCAATGGACATT--TAGTCCAATGCCACCAGCAGACTTGGAAATTAAAGCAC 2108
Query 54342 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 54401
|| | | | | | || || || || |||| | ||| | | ||| ||||
Sbjct 2109 ATTGGTGGGCAGATGTAAATATACCATCAATGGAATCACCAGCCATAGTCAATAGGAAAC 2168
Query 54402 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 54461
|| |||| ||| | | | ||| | ||| ||| | || ||||| || || || |
Sbjct 2169 AGGATGACAATTGCGGTTGGCGAGTGGCAGCAGCAAAGAGTGTTGGAGAGGCATGTGTGA 2228
Query 54462 ACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAA 54521
| | ||| ||||| | || || || || ||||| | || ||||| |||||
Sbjct 2229 AATAGCGTTCCGAAAGCAAGTTATAAGTTTCAATAGCGGCATCAATATCTTCACCATGAA 2288
Query 54522 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 54581
| || | | |||||||||||||||||||| || | |||||| || ||| || | |
Sbjct 2289 TACCAATGGAAACACGCATTAACATGTGCTGCGGACGTTCAACAATTTTGCCATTCAACT 2348
Query 54582 TCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 54641
| || || ||||| || | ||||| ||||||||||| ||||| ||| || || |
Sbjct 2349 TGAGTAAATAGGAACGCTCAAGTGTTTTGAAACCAAAATAATTGTAACCAAAATCACGGT 2408
Query 54642 CGTAAATAATAACTGAGTT 54660
| || || ||| | || ||
Sbjct 2409 CATATATTATAGCCGAATT 2427
>seq22
Length=933496
Score = 257 bits (284), Expect = 2e-63
Identities = 493/715 (69%), Gaps = 19/715 (3%)
Strand=Plus/Minus
Query 23963 CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 24022
||| | |||||| ||||| || ||||| ||| | || |||||||| || || |
Sbjct 329805 CAAGCGATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATCAA 329746
Query 24023 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 24082
|| || || | || |||| | |||||||||||||| || || || | || ||
Sbjct 329745 ATTCACAGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGCAATGAT 329686
Query 24083 AG--ATCTTACTGTTTCTTCACTCGGTGGATAC--AATAAA-TGTTTAAACATCAAACAT 24137
|| ||| || || ||| ||| | | ||| | |||| ||||||| ||
Sbjct 329685 TTCAATAATACGGTCCCT--ACT---TGGCTTCTGAATGAGGTGTTGGAACATCAGGCAA 329631
Query 24138 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 24197
|| |||||||| |||| || ||||| || ||||| || || || || || | ||
Sbjct 329630 GCAAAATCGCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCA 329571
Query 24198 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATT 24257
||||||||||| || || || |||||||| || || ||||| ||| |||||||||
Sbjct 329570 GGCATTAGGCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATG 329511
Query 24258 CCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC-GCTGTC-ATGTA-TC 24314
||||| || || ||||| || || | | ||| ||| | ||| | | || ||| | ||
Sbjct 329510 CCTTCAACCGCGGCAAATGCTATTATACGTTCGCCAAAGTTGGCCGATTTCGATGAAATC 329451
Query 24315 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 24374
||| | |||||||| ||||| || ||| |||||| ||||| |||||||| ||
Sbjct 329450 CACGCCAGTGCCCAATCAGCCTTGCGCTTAACAGCAGGCATCGTCTCAATAGCATTGAAC 329391
Query 24375 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCC 24434
| || | ||| || | ||| |||| |||||||||||| || | || ||||||||
Sbjct 329390 AAGTAATCCCTTTGCTTGCCATCCTTAATATATGTATCAATTAATATGCTGTACATTTCA 329331
Query 24435 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 24494
||||| | || || ||||| ||||||||||| ||||| || | ||||| || || ||
Sbjct 329330 GAATGCACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGATTTGA 329271
Query 24495 ACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 24554
|||||| | || ||||| |||| ||||||||||| || || || ||| |||||
Sbjct 329270 ACTTCTTGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGGCAAAG 329211
Query 24555 AACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCTGGTGTTAGTTTATTCCAATCA 24611
|| ||||| || || || |||| || | ||| |||| || |||||||
Sbjct 329210 AATGCCAAAACGTGCGAAATGAAATGGCGTTCATTGTC-GGTG--AGACGCGCCCAATCA 329154
Query 24612 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666
| |||||||| || | || || |||||||| ||||| || ||||| |||||||
Sbjct 329153 TCCATATCTTTGGAAAGGTCAACCTCTTCCACCGTCCAGAAGGATGCTTCTGCCT 329099
>seq32170
Length=3971
Score = 87.8 bits (96), Expect = 2e-12
Identities = 161/236 (68%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 54428 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 54487
||||| || || | || || || ||||| || ||||| || || | |||||||||
Sbjct 3343 CCCGCGTTGAAGAGCGTCGGCGAGGCGTGGGTGAACCAGCGCTCCGACATCAGATTGTAC 3284
Query 54488 GTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 54547
||||| || || | ||| || ||| | ||||| || || ||||| ||||| | |||
Sbjct 3283 GTCTCAATGGCCGCGTCAATGTCCTCGTAGTGAATGCCCACGGCGACGCGCATCAGCATC 3224
Query 54548 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTT 54607
||||| || | || || | ||| | || ||||||| |||| | | ||
Sbjct 3223 TGCTGGGGGCGCTCCACCACCTTCCCGCCGATCTTCAGCAGGTAGCTGCGGTAGAGCGTC 3164
Query 54608 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAG 54663
|| || ||||| |||||||| |||||| || ||||| || || | ||||||||
Sbjct 3163 TTGAAGCCAAAGTAGTTGTAGTGAAAGTCGCGATCGTAGATGATGGCCGAGTTGAG 3108
Score = 87.8 bits (96), Expect = 2e-12
Identities = 257/394 (65%), Gaps = 4/394 (1%)
Strand=Plus/Minus
Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040
|| || || || | ||| ||||||| |||||| | ||||| ||| || || ||||||
Sbjct 3867 CCGGGGCACTCGTGCGGGCACATCAGCGACCAGACGCCGTCCGCCTGGACGCGCTTCATA 3808
Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100
||||| || || | ||| | || || || || | || | | ||||| ||
Sbjct 3807 AAGAGGTCCGGCACCCACATGGCGTAGAAGAGGTCGCGGGCACGGAGCTCCTCCGAGCCG 3748
Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160
|| ||||| || ||||| ||| | | || || | ||||||||||| | ||| |||
Sbjct 3747 GTGTTCTTGCGCAGGTCGAGAAACTCGAAGATGTCGGCGTGCCACGGTTCGAGGTAGATG 3688
Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220
| | | || || || ||||| || ||||| || | ||| | |||||||| || ||
Sbjct 3687 GCAAACGCCCCCGGGCGCTTGTTCCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGTAG 3628
Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280
|| | || ||| || | | |||||| | || || || ||| ||| ||| | ||
Sbjct 3627 ACGCGCAGCATCGGCACCAGCCCATTGCTGACGCCGTTTGTGCCGCTGATGTAGGTGCCC 3568
Query 54281 CTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338
||| || || | | | ||| | || || || || ||| || ||||| | |
Sbjct 3567 GCGGCGCGGATGCAGTGCACGTTG--ACGCCAATGCCGCCGGCCGACTTGGAGATGATGG 3510
Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTAT 54372
|||| | || | ||| || ||||||||||| ||
Sbjct 3509 CGCACTGCTTCAGCGTGTCGTAGATGCCCTCAAT 3476
>seq59797
Length=1646
Score = 82.4 bits (90), Expect = 9e-11
Identities = 184/273 (67%), Gaps = 5/273 (2%)
Strand=Plus/Minus
Query 24405 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 24464
|| |||||||||||||| || | || || || || || || || || || ||
Sbjct 1349 TAGGTATCAATCAAAAGTGAGTAAGTCTCGGAGTGTATATTCTCCATCATAATCTGGAAA 1290
Query 24465 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTT 24524
|||||||||||||| || || | | |||||| || | |||| ||| || ||
Sbjct 1289 CCGTAGAAACATCTTGCTTCTGCGAGCTGTACCTCGGAGGAGAATCTTTCGAGTAGGTTC 1230
Query 24525 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 24584
||||| || || |||||| || || || || || |||||||| | || || | ||
Sbjct 1229 TCATTGACAATACCGTCAGATGCGGCGAAGAATGCTAATACATGACTAATGAAGTGCTTC 1170
Query 24585 TCGT-CTGGTGTTAGTTTATT---CCAATCATTGATATCTTTAGATATATCCACTTCTTC 24640
|| | || || ||| || || ||| || ||||||| || || | |||| ||||||
Sbjct 1169 TCATCCTTGT-TTATCTTGTTCTGCCAGTCCGTGATATCCTTCGACAAGTCCATTTCTTC 1111
Query 24641 CACTGTCCAAAATGATGCCTCTGCCTTTTTATA 24673
| ||||| || || || ||||| || || ||
Sbjct 1110 TGCAGTCCAGAAAGAAGCTTCTGCTTTCTTGTA 1078
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593078376861600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |