Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq76387 131 1e-25
seq28390 118 9e-22
seq8352 109 5e-19
seq2574 100 2e-16
seq22380 96.9 3e-15
seq280 95.1 1e-14
>seq76387
Length=1185
Score = 131 bits (144), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | |||||||| || | ||||||||||| || ||||| || ||||
Sbjct 762 CCACCGCGCAGACGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAG 821
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| | ||||||| ||||| || || || | || || | |||||||||| |||
Sbjct 822 AGGGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGG 881
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| |||||| ||||| | ||| ||||| | |||||||
Sbjct 882 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATGGTATCGCTGGGCTCCACC 941
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| |||||||||||||| | || || ||||| || |||||
Sbjct 942 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 988
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | || |||| || | |||||||||||||| ||||| |||||||
Sbjct 189 CCGCCGCGCAGACGAAGGACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAG 248
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| | ||||||| ||||| |||||||| | || || | |||||||||| |||
Sbjct 249 AGGGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGGA 308
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| |||||| ||||| | | | || || | |||||||
Sbjct 309 ATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 368
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | || || ||||||||||| | || || || || || |||||
Sbjct 369 TCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 415
Score = 82.4 bits (90), Expect = 6e-11
Identities = 132/190 (69%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045
||||||| ||||| ||||| ||||| | ||||||| || || ||||| || | |
Sbjct 571 CCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCGTCCTCGAGTTGCTTGCCAGCGAAGA 630
Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105
| || | |||||||||| ||| | ||| |||||||| |||||| ||||| |
Sbjct 631 TGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCT 690
Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165
| | || || | ||||||| || | || || ||||||||||| | || || || |
Sbjct 691 CAATGGTGTCGCTGGGCTCCACCTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTAACGA 750
Query 21166 ATATTTGCAT 21175
| || |||||
Sbjct 751 AGATCTGCAT 760
>seq28390
Length=4902
Score = 118 bits (130), Expect = 9e-22
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | ||| |||| || | || |||||||| || || || |||||||
Sbjct 534 CCACCACGGAGTCGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCCGAA 475
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| || ||||||| |||||||| || || | || || | ||||||||| ||
Sbjct 474 AGGGTGCGGCCGTCCTCGAGCTGTTTACCGGCGAAGATGAGACGCTGCTGGTCGGGAGGG 415
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| ||||||| ||||| | ||| |||||| ||||||
Sbjct 414 ATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTATCAGAGGGCTCGACC 355
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178
|| | ||| ||||||||||| || | || || ||||| |||||||| ||
Sbjct 354 TCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATTTGCATGTT 305
>seq8352
Length=27642
Score = 109 bits (120), Expect = 5e-19
Identities = 104/133 (78%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 23811 GTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGCGCCGTGTCTCTGGCGGGT 23870
|||||||||||||||||||||||| | ||| | ||||||| ||||| || || | ||
Sbjct 21314 GTTGCCCAGGTCGCCGACGTGTCGGGCGGCGTCTCCGGGCGCCCCGTGGCTGTGTCCGGC 21255
Query 23871 GGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGCAC 23930
|||||| ||||| ||| | |||||||||| |||||||||||| | ||| ||
Sbjct 21254 GGGGTTGTAGTGCGGGCCCATGCTGGTGCAGCCGTCCGAGGTGTCGCCGAACTGGTGGAC 21195
Query 23931 GTGAAAACCGTGC 23943
|||||||||||||
Sbjct 21194 GTGAAAACCGTGC 21182
>seq2574
Length=80092
Score = 100 bits (110), Expect = 2e-16
Identities = 141/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045
|||| || ||||| ||||| ||| ||| || ||||||| ||||| ||||| || | |
Sbjct 58860 CCTTCTGGATGTTGTAGTCGCTCAGCGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 58919
Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105
| |||| ||||||||| || | ||| |||||||| |||||| ||||| |
Sbjct 58920 TCAGTCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCT 58979
Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165
||| || || | ||||||| || | ||| ||||||||||| || | || || || |
Sbjct 58980 CGATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGA 59039
Query 21166 ATATTTGCATTTTGAATC 21183
| || ||||| ||| |||
Sbjct 59040 AGATCTGCATCTTGGATC 59057
>seq22380
Length=7273
Score = 96.9 bits (106), Expect = 3e-15
Identities = 103/132 (78%), Gaps = 3/132 (2%)
Strand=Plus/Plus
Query 23808 CACGTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGC-GTCGGGCGCGCCGTGTCTCTGGC 23866
|||||||||||||||||| ||||| |||||| || | || |||| ||||||| ||| ||
Sbjct 6586 CACGTTGCCCAGGTCGCCAACGTGACGCTCCTCGTCAGTGGGGC-CGCCGTGAGTCTTGC 6644
Query 23867 GGGTGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGT 23926
||||| ||||| | |||| || |||||||||||| || ||||||| || ||||
Sbjct 6645 CCTGTGGGTTGAAGTGAGCACCAGACGAGGTGCAGCCGTTGGTGTTGTCGCCAAACTCGT 6704
Query 23927 GCAC-GTGAAAA 23937
| || || ||||
Sbjct 6705 GAACTGTTAAAA 6716
Score = 96.9 bits (106), Expect = 3e-15
Identities = 103/132 (78%), Gaps = 3/132 (2%)
Strand=Plus/Plus
Query 23808 CACGTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGC-GTCGGGCGCGCCGTGTCTCTGGC 23866
|||||||||||||||||| ||||| |||||| || | || |||| ||||||| ||| ||
Sbjct 6815 CACGTTGCCCAGGTCGCCAACGTGACGCTCCTCGTCAGTGGGGC-CGCCGTGAGTCTTGC 6873
Query 23867 GGGTGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGT 23926
||||| ||||| | |||| || |||||||||||| || ||||||| || ||||
Sbjct 6874 CCTGTGGGTTGAAGTGAGCACCAGACGAGGTGCAGCCGTTGGTGTTGTCGCCAAACTCGT 6933
Query 23927 GCAC-GTGAAAA 23937
| || || ||||
Sbjct 6934 GAACTGTTAAAA 6945
>seq280
Length=341618
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
|| |||| ||||| ||| ||||||||||| ||||| ||||| | || ||| || | ||
Sbjct 105812 AGGACCAAATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCT 105871
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|| ||||||||||| || | || | | |||||| || ||| | |||||||| ||
Sbjct 105872 TCAAGCTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTATCT 105931
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
|||||| ||| || | ||| || || ||||| |||| ||| || ||
Sbjct 105932 TGGATCTTGGCTTTAACATTTTCGATGGTGTCTGATGGCTCAACCTCCAAGGTGATAGTT 105991
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
||||| |||| || || || || ||||||||
Sbjct 105992 TTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 106023
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
|| |||| ||||| ||| ||||||||||| ||||| ||||| | || ||| || | ||
Sbjct 114058 AGGACCAAATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCT 114117
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|| ||||||||||| || | || | | |||||| || ||| | |||||||| ||
Sbjct 114118 TCAAGCTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTATCT 114177
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
|||||| ||| || | ||| || || ||||| |||| ||| || ||
Sbjct 114178 TGGATCTTGGCTTTAACATTTTCGATGGTGTCTGATGGCTCAACCTCCAAGGTGATAGTT 114237
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
||||| |||| || || || || ||||||||
Sbjct 114238 TTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 114269
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
|| || | ||||| || ||||| ||||| |||||||| || | || ||| || | ||
Sbjct 106040 AGGACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCGGACAAGGTGCGGCCATCT 106099
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|| ||||| ||||| || | || | | ||| || || || | |||||||| ||
Sbjct 106100 TCGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCCTTATCT 106159
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
||| || |||||| | ||| |||||| || || |||| || |||||
Sbjct 106160 TGGATTTTGGCTTTCACATTTTCGATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTT 106219
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
||||| || || ||||| ||||||||||||||
Sbjct 106220 TTGCCAGTCAATGTTTTAACAAATATTTGCAT 106251
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
|| || | ||||| || ||||| ||||| |||||||| || | || ||| || | ||
Sbjct 114286 AGGACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCGGACAAGGTGCGGCCATCT 114345
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|| ||||| ||||| || | || | | ||| || || || | |||||||| ||
Sbjct 114346 TCGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCCTTATCT 114405
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
||| || |||||| | ||| |||||| || || |||| || |||||
Sbjct 114406 TGGATTTTGGCTTTCACATTTTCGATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTT 114465
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
||||| || || ||||| ||||||||||||||
Sbjct 114466 TTGCCAGTCAATGTTTTAACAAATATTTGCAT 114497
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421813171565720
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