Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq76387 131 1e-25 seq28390 118 9e-22 seq8352 109 5e-19 seq2574 100 2e-16 seq22380 96.9 3e-15 seq280 95.1 1e-14 >seq76387 Length=1185 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| || | ||||||||||| || ||||| || |||| Sbjct 762 CCACCGCGCAGACGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAG 821 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | ||||||| ||||| || || || | || || | |||||||||| ||| Sbjct 822 AGGGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGG 881 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||||| | ||| ||||| | ||||||| Sbjct 882 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATGGTATCGCTGGGCTCCACC 941 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||||||||| | || || ||||| || ||||| Sbjct 942 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 988 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| || | |||||||||||||| ||||| ||||||| Sbjct 189 CCGCCGCGCAGACGAAGGACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAG 248 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | ||||||| ||||| |||||||| | || || | |||||||||| ||| Sbjct 249 AGGGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGGA 308 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||||| | | | || || | ||||||| Sbjct 309 ATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 368 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || || ||||||||||| | || || || || || ||||| Sbjct 369 TCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 415 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045 ||||||| ||||| ||||| ||||| | ||||||| || || ||||| || | | Sbjct 571 CCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCGTCCTCGAGTTGCTTGCCAGCGAAGA 630 Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105 | || | |||||||||| ||| | ||| |||||||| |||||| ||||| | Sbjct 631 TGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCT 690 Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165 | | || || | ||||||| || | || || ||||||||||| | || || || | Sbjct 691 CAATGGTGTCGCTGGGCTCCACCTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTAACGA 750 Query 21166 ATATTTGCAT 21175 | || ||||| Sbjct 751 AGATCTGCAT 760 >seq28390 Length=4902 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | || |||||||| || || || ||||||| Sbjct 534 CCACCACGGAGTCGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCCGAA 475 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| |||||||| || || | || || | ||||||||| || Sbjct 474 AGGGTGCGGCCGTCCTCGAGCTGTTTACCGGCGAAGATGAGACGCTGCTGGTCGGGAGGG 415 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||||| ||||| | ||| |||||| |||||| Sbjct 414 ATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTATCAGAGGGCTCGACC 355 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | ||| ||||||||||| || | || || ||||| |||||||| || Sbjct 354 TCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATTTGCATGTT 305 >seq8352 Length=27642 Score = 109 bits (120), Expect = 5e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 23811 GTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGCGCCGTGTCTCTGGCGGGT 23870 |||||||||||||||||||||||| | ||| | ||||||| ||||| || || | || Sbjct 21314 GTTGCCCAGGTCGCCGACGTGTCGGGCGGCGTCTCCGGGCGCCCCGTGGCTGTGTCCGGC 21255 Query 23871 GGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGCAC 23930 |||||| ||||| ||| | |||||||||| |||||||||||| | ||| || Sbjct 21254 GGGGTTGTAGTGCGGGCCCATGCTGGTGCAGCCGTCCGAGGTGTCGCCGAACTGGTGGAC 21195 Query 23931 GTGAAAACCGTGC 23943 ||||||||||||| Sbjct 21194 GTGAAAACCGTGC 21182 >seq2574 Length=80092 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045 |||| || ||||| ||||| ||| ||| || ||||||| ||||| ||||| || | | Sbjct 58860 CCTTCTGGATGTTGTAGTCGCTCAGCGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 58919 Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105 | |||| ||||||||| || | ||| |||||||| |||||| ||||| | Sbjct 58920 TCAGTCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCT 58979 Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165 ||| || || | ||||||| || | ||| ||||||||||| || | || || || | Sbjct 58980 CGATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGA 59039 Query 21166 ATATTTGCATTTTGAATC 21183 | || ||||| ||| ||| Sbjct 59040 AGATCTGCATCTTGGATC 59057 >seq22380 Length=7273 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/132 (78%), Gaps = 3/132 (2%) Strand=Plus/Plus Query 23808 CACGTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGC-GTCGGGCGCGCCGTGTCTCTGGC 23866 |||||||||||||||||| ||||| |||||| || | || |||| ||||||| ||| || Sbjct 6586 CACGTTGCCCAGGTCGCCAACGTGACGCTCCTCGTCAGTGGGGC-CGCCGTGAGTCTTGC 6644 Query 23867 GGGTGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGT 23926 ||||| ||||| | |||| || |||||||||||| || ||||||| || |||| Sbjct 6645 CCTGTGGGTTGAAGTGAGCACCAGACGAGGTGCAGCCGTTGGTGTTGTCGCCAAACTCGT 6704 Query 23927 GCAC-GTGAAAA 23937 | || || |||| Sbjct 6705 GAACTGTTAAAA 6716 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/132 (78%), Gaps = 3/132 (2%) Strand=Plus/Plus Query 23808 CACGTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGC-GTCGGGCGCGCCGTGTCTCTGGC 23866 |||||||||||||||||| ||||| |||||| || | || |||| ||||||| ||| || Sbjct 6815 CACGTTGCCCAGGTCGCCAACGTGACGCTCCTCGTCAGTGGGGC-CGCCGTGAGTCTTGC 6873 Query 23867 GGGTGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGT 23926 ||||| ||||| | |||| || |||||||||||| || ||||||| || |||| Sbjct 6874 CCTGTGGGTTGAAGTGAGCACCAGACGAGGTGCAGCCGTTGGTGTTGTCGCCAAACTCGT 6933 Query 23927 GCAC-GTGAAAA 23937 | || || |||| Sbjct 6934 GAACTGTTAAAA 6945 >seq280 Length=341618 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||||| ||| ||||||||||| ||||| ||||| | || ||| || | || Sbjct 105812 AGGACCAAATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCT 105871 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||||||||| || | || | | |||||| || ||| | |||||||| || Sbjct 105872 TCAAGCTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTATCT 105931 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||| || | ||| || || ||||| |||| ||| || || Sbjct 105932 TGGATCTTGGCTTTAACATTTTCGATGGTGTCTGATGGCTCAACCTCCAAGGTGATAGTT 105991 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| |||| || || || || |||||||| Sbjct 105992 TTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 106023 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||||| ||| ||||||||||| ||||| ||||| | || ||| || | || Sbjct 114058 AGGACCAAATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATCT 114117 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||||||||| || | || | | |||||| || ||| | |||||||| || Sbjct 114118 TCAAGCTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTATCT 114177 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||| || | ||| || || ||||| |||| ||| || || Sbjct 114178 TGGATCTTGGCTTTAACATTTTCGATGGTGTCTGATGGCTCAACCTCCAAGGTGATAGTT 114237 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| |||| || || || || |||||||| Sbjct 114238 TTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 114269 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || || | ||||| || ||||| ||||| |||||||| || | || ||| || | || Sbjct 106040 AGGACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCGGACAAGGTGCGGCCATCT 106099 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| ||||| || | || | | ||| || || || | |||||||| || Sbjct 106100 TCGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCCTTATCT 106159 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || |||||| | ||| |||||| || || |||| || ||||| Sbjct 106160 TGGATTTTGGCTTTCACATTTTCGATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTT 106219 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || ||||| |||||||||||||| Sbjct 106220 TTGCCAGTCAATGTTTTAACAAATATTTGCAT 106251 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || || | ||||| || ||||| ||||| |||||||| || | || ||| || | || Sbjct 114286 AGGACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCGGACAAGGTGCGGCCATCT 114345 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| ||||| || | || | | ||| || || || | |||||||| || Sbjct 114346 TCGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCCTTATCT 114405 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || |||||| | ||| |||||| || || |||| || ||||| Sbjct 114406 TGGATTTTGGCTTTCACATTTTCGATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTT 114465 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || ||||| |||||||||||||| Sbjct 114466 TTGCCAGTCAATGTTTTAACAAATATTTGCAT 114497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421813171565720