Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_001895.1
Length=33593
Score E
Sequences producing significant alignments: (Bits) Value
seq52999 654 0.0
>seq52999
Length=1923
Score = 654 bits (724), Expect = 0.0
Identities = 1261/1830 (69%), Gaps = 65/1830 (4%)
Strand=Plus/Minus
Query 995 ATCGGCGAGCTGTGATGCACGGCAGCCCGCAGGCTTTTTGCCAGACCGGTAAAGCTGACC 1054
|| || ||||||||||||||||| || || | | ||||| ||| || ||| ||
Sbjct 1908 ATGGGTGAGCTGTGATGCACGGCGGCGCGGAACGTGCGCGCCAGCCCGTCAACGCTCACG 1849
Query 1055 GGTGGCTCATACCATCTGCCGTTACTGATGCACTCGACGTAATCCAGAATGTCACGGCGG 1114
||||| |||||||| | | || | | |||||| ||||| ||||| | || ||||||
Sbjct 1848 GGTGGTTCATACCAGCGATCATTGATAACGCACTCCACGTAGTCCAGCAGTTCGCGGCGG 1789
Query 1115 TCGAGTACCGGCACCGGCTCACCAAAGGTGAATGCCTCCATTTTCGGGCCGCTGGCGGTC 1174
|| || ||||| | ||| || |||||||| || |||||| | ||||||| ||
Sbjct 1788 TCCAGCACCGGGATCGGGTCGCCAAAGGTAAACGCCTCCGACGCTGCCCCGCTGG---TC 1732
Query 1175 ATTGTTTT-----TGCCGCA--GGTTGCG-GTGTTTTCCCTTTTTTC--TTGCTCATCAG 1224
|| ||| | ||| ||| || |||| | | | | || | | |||||||||||
Sbjct 1731 AT-GTTATCCGGCTGCGGCACGGGCTGCGTGCGGGTGCGGTTCCTGCGTTTGCTCATCAG 1673
Query 1225 TAAAACTCCAGAATGGTGGATGTCAGCGGG-GTGCTGATACCGGCGGTG-AGTGGCTCAT 1282
|||| ||||| |||| | | ||| | |||| | | | | || || ||||| |
Sbjct 1672 TAAATCTCCACAATGTT------CTGCGTGTGTGCCGC--CTGTCCCTGCAGCGGCTCGT 1621
Query 1283 TTAACAGGGCGTGCATGGTCGCCCAGGCGAGGTCGGCGTGGCTGGCTTCCTCGCTGCGGC 1342
|| ||| |||||||||||||||||||| | ||| |||||||| |||||||||||||||
Sbjct 1620 TTGCCAGCGCGTGCATGGTCGCCCAGGCTAAATCGCCGTGGCTGACTTCCTCGCTGCGGC 1561
Query 1343 TGGCCTCATAGGTGGCGCTGCGTCCGCTGCTGGTCATGGTCTTGCGGATAGCCATAAACG 1402
||| |||||||| | | | |||||| || ||| |||||||||| |||||| |
Sbjct 1560 TGGTTTCATAGGTCGGACGGTTGCCGCTGGCCGTGGTGGCTTTGCGGATAGACATAAATG 1501
Query 1403 AGCTG-GTGATGTCGGTGGCGCTGACGTCGTATTCCAGACAGCCACGGCGGATAACGTCT 1461
| ||| | ||||||| | |||| |||| | ||||| | || | | ||| |||
Sbjct 1500 A-CTGCGCGATGTCGAGGTGGCTGGCGTCAAACTCCAGCCGCCCGCTGGCGATGGTGTCG 1442
Query 1462 TTTGCCTTGAGCACCATTGCGGTTTTCATTTCCGGCGTGTAGCGGATATCACGCGCG-GC 1520
| ||||| ||||||| ||| |||||| | ||| | ||| | || | | ||
Sbjct 1441 TAAGCCTTCAGCACCAGGGCGTTTTTCACGTTCGGGTTATAGACAAACTCCTTCACCTGC 1382
Query 1521 GGGATAGAACGAGCGCACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATACC 1580
|||| |||| | || || | | ||||| | |||| |||||||| || || ||
Sbjct 1381 GGGA-AGAAGGCTTTGACATTCTCGTATACGCCAAGCCCGACGCCGGTGGAGTCGATGCC 1323
Query 1581 GATGTATTCGACGTTGTATTTTTCGGTGAGTTTGCGGATGGATTCCGCCTGGGTGGCAAA 1640
||| || |||||| || | | || || | | ||||| || ||||| | ||
Sbjct 1322 GATATAGGTGACGTTATACTGCTGCGTCAGCGTCCTGATGGCGTCAGCCTGCGCCCGGAA 1263
Query 1641 GTCCATGCCTTTCCACTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACCGG 1700
|||||| || |||||||||||||||||| || | ||| ||||| || | ||| | ||
Sbjct 1262 GTCCATCCCGCGCCACTGGTGACGCTCAAGGATGCGGAACTTGCCGCCCGGCACGGCAGG 1203
Query 1701 CGGTGCCAGTACCACGCATCCGGCGCTGTCGCCA--CGGTGTGAC-------GGGTCGTA 1751
|||||||| ||||||||||||||||||||||| | | || | ||||||||
Sbjct 1202 CGGTGCCATGACCACGCATCCGGCGCTGTCGCCGTTCTGCGTTCCCTTCGCGGGGTCGTA 1143
Query 1752 ACCAATCCATACCGGGCGGGAGCCGAACGGATTGGCG----GCAAACGGCGCATAGTCTT 1807
|| ||||| || |||||||||| ||| || | || | || ||||
Sbjct 1142 GCCGATCCACACTTCTTTCCAGCCGAACGG----GCGCAGCGCCAGCGCCTCAAAGTCGG 1087
Query 1808 CCCATTCTTCC-AGCGTGTCGACCATGCAGCGTTGCAGCTCCTCGAACGGGAACACCGAT 1866
||| ||||| ||| |||| |||||||| |||||| | | | |||| |||||
Sbjct 1086 TCCAGACTTCCCAGC-TGTCCACCATGCATTTCTGCAGCATGGCCAGCTGGAATACCGAC 1028
Query 1867 GCCTTGTCGTCAACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCG 1926
||| ||||| | ||| | ||||| | |||||| | |||| || | ||||| ||
Sbjct 1027 GCCAGATCGTCCATAAAGACGCACATCAGCAGGTTCTGGTAATCCTCCGGGCTGTAG-CG 969
Query 1927 CGTTTG-AGCTGCTCAATGTCGAACAGCGTGCAGCCGCCTTTCAGGGCGTCCTCAATGGT 1985
||| | |||||||| | ||| ||||| |||||||| || || || |||| |||
Sbjct 968 CGTGCGCAGCTGCTCCAGGTCAAACAGGTCACAGCCGCCGCGCACCGCATCTTCAACGGT 909
Query 1986 GACAATCTGTCGCCACTGGCCGTCCGCACAGAGAAGCCCACCGGCAAGGGCGTTATGACT 2045
||| ||||| || |||||||||| | ||||| | || |||| || | | ||| ||
Sbjct 908 GACGATCTGGCGAAACTGGCCGTCTTCGCAGAGGCGACCGGCGGCCAGTGACTGATGGCT 849
Query 2046 GACGTCGATTTCCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTAAACAGTTCACCCGA 2105
|| ||| || || || || || || |||| || ||| ||| ||| | ||| ||
Sbjct 848 GAGGTCAATATCAACCCGGTCAGCTT---TGGCCCGGCCCTTGTTGAACTGCGAACCGGA 792
Query 2106 CCAGAACGGGTAGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGAGCGCAG 2165
||||||||| |||||| ||||| || ||||||||||||| || ||||| ||||
Sbjct 791 CCAGAACGGATAGGCGCTGTGCGTGAGGCTGGACGGGGTGGAAAAGTAGGTTTCGCGCCA 732
Query 2166 GTGACTCTGTG-AG-GCCATACCTGATGCCACCTTACGCAGTACCTGAAAATTCGGGATC 2223
| || |||| || ||||| || || ||||| || ||||| ||||||| |||||||||
Sbjct 731 CTT-CT-TGTGCAGCGCCATGCCGGACGCCACTTTCTGCAGTTCCTGAAACTTCGGGATC 674
Query 2224 CAGAAAATCTCATCGACGTACAGGTCGCCGTTATGACTCTGCGCGGTGTTGGAGTTGGTG 2283
|||||| ||||| | |||||| | ||||| || |||||||||||| || |||||||
Sbjct 673 CAGAAATATTCATCCAGGTACAGATTGCCGTGATAGCTCTGCGCGGTGCGGGCGTTGGTG 614
Query 2284 CCGAGAAAAATCAGTTTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCA 2343
|| || ||| ||| || |||||| || | | || ||||||| || |||||||
Sbjct 613 CCCAGGAAATACAGGCACGCACCGTTACTGAGC--GTCA-TCGGGTCGCCCTTCAGGTCT 557
Query 2344 ACGTCAACCAGACGGGCAAAGGCGATGATGTATTCGCGGAACACATACGCCTGTGTTTTA 2403
||||| ||| |||||||| | |||||||| | ||| || | |||||| | |||
Sbjct 556 ACGTCCACCTCGCGGGCAAATTCAATGATGTACTGCTTGAAGACGTGCGCCTGCGCCTTA 497
Query 2404 CTGGCCGACAGAAAAATCTGGTTATGACCGGTTTTCAGGGCACGCAGCAGCGCCTCGCGG 2463
||||| || || || ||||| || | ||||| |||| ||| | |||||||||||||
Sbjct 496 CTGGCTGAAAGGAATATCTGATTGCGCCCGGTGGTCAGCGCATCGATCAGCGCCTCGCGG 437
Query 2464 GAAAAATAAAACGTCGCGCCAATCTGGCGGGATTTCAGGATATCGCGGATGCGGTGCTCA 2523
| |||| | || || || ||||||||||| || ||||| | | ||||| | || || |
Sbjct 436 GCAAAAAAGAAGGTGGCCCCAATCTGGCGCGACTTCAGCAGGTTGCGGACGGAGTACTTA 377
Query 2524 AGCCCGGCACGATACCAGTGCAGCTGATAGTCGAAAGACTGCTCAAAGAAAATCTGCTCC 2583
|||||| |||| || |||| ||| |||| | | ||||| || || |
Sbjct 376 TTCCCGGCCTCCCACCACTGGCGCTGGTAGCCGAACATCGAGCCGTGGAAAACCTCCTGC 317
Query 2584 AGCTTTTCGATGGCCTCGTCACTGAAAAAATTCTTTTTC---GGTTTGCGCCGTCCGCCT 2640
||||| || || ||||| ||||| | ||||||| | || || ||| | |||
Sbjct 316 AGCTTCTCAATCTGTTCGTCGCTGAACAGGTTCTTTTCCGGGGGCTTACGCGG---GCCC 260
Query 2641 TTGTTACGGTTAGCGACGTTCGGATTAAGGTCTGCCTCGTTGCCGGTCTGGCTGTAGCGG 2700
||||| ||||| | ||||||||||| ||||| || || |||||| | |||| | |
Sbjct 259 TTGTTGCGGTTCTCCACGTTCGGATTCAGGTCCGCTTCATTGCCGCCATTGCTGAATTTG 200
Query 2701 TTGACCCGTGCCAGTCGTTCAATCTGGCGTCCCAGCAGGTCAATTTCCTTGAAGTCACCG 2760
|| ||| || | || || ||| || |||||||||| ||||||||||||||
Sbjct 199 CCGATCCGGGCATGGCGCTCGGACTGCCGCGCCAGCAGGTCGATTTCCTTGAAGTCCTTT 140
Query 2761 CCGGTTTTCTGTGGTTTGATGATGAGCTGG 2790
|| ||||| || ||||||||||||
Sbjct 139 CCTTCCTTCTGCTCCTTCATGATGAGCTGG 110
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 107265487949700
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