Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_001895.1 Length=33593 Score E Sequences producing significant alignments: (Bits) Value seq52999 654 0.0 >seq52999 Length=1923 Score = 654 bits (724), Expect = 0.0 Identities = 1261/1830 (69%), Gaps = 65/1830 (4%) Strand=Plus/Minus Query 995 ATCGGCGAGCTGTGATGCACGGCAGCCCGCAGGCTTTTTGCCAGACCGGTAAAGCTGACC 1054 || || ||||||||||||||||| || || | | ||||| ||| || ||| || Sbjct 1908 ATGGGTGAGCTGTGATGCACGGCGGCGCGGAACGTGCGCGCCAGCCCGTCAACGCTCACG 1849 Query 1055 GGTGGCTCATACCATCTGCCGTTACTGATGCACTCGACGTAATCCAGAATGTCACGGCGG 1114 ||||| |||||||| | | || | | |||||| ||||| ||||| | || |||||| Sbjct 1848 GGTGGTTCATACCAGCGATCATTGATAACGCACTCCACGTAGTCCAGCAGTTCGCGGCGG 1789 Query 1115 TCGAGTACCGGCACCGGCTCACCAAAGGTGAATGCCTCCATTTTCGGGCCGCTGGCGGTC 1174 || || ||||| | ||| || |||||||| || |||||| | ||||||| || Sbjct 1788 TCCAGCACCGGGATCGGGTCGCCAAAGGTAAACGCCTCCGACGCTGCCCCGCTGG---TC 1732 Query 1175 ATTGTTTT-----TGCCGCA--GGTTGCG-GTGTTTTCCCTTTTTTC--TTGCTCATCAG 1224 || ||| | ||| ||| || |||| | | | | || | | ||||||||||| Sbjct 1731 AT-GTTATCCGGCTGCGGCACGGGCTGCGTGCGGGTGCGGTTCCTGCGTTTGCTCATCAG 1673 Query 1225 TAAAACTCCAGAATGGTGGATGTCAGCGGG-GTGCTGATACCGGCGGTG-AGTGGCTCAT 1282 |||| ||||| |||| | | ||| | |||| | | | | || || ||||| | Sbjct 1672 TAAATCTCCACAATGTT------CTGCGTGTGTGCCGC--CTGTCCCTGCAGCGGCTCGT 1621 Query 1283 TTAACAGGGCGTGCATGGTCGCCCAGGCGAGGTCGGCGTGGCTGGCTTCCTCGCTGCGGC 1342 || ||| |||||||||||||||||||| | ||| |||||||| ||||||||||||||| Sbjct 1620 TTGCCAGCGCGTGCATGGTCGCCCAGGCTAAATCGCCGTGGCTGACTTCCTCGCTGCGGC 1561 Query 1343 TGGCCTCATAGGTGGCGCTGCGTCCGCTGCTGGTCATGGTCTTGCGGATAGCCATAAACG 1402 ||| |||||||| | | | |||||| || ||| |||||||||| |||||| | Sbjct 1560 TGGTTTCATAGGTCGGACGGTTGCCGCTGGCCGTGGTGGCTTTGCGGATAGACATAAATG 1501 Query 1403 AGCTG-GTGATGTCGGTGGCGCTGACGTCGTATTCCAGACAGCCACGGCGGATAACGTCT 1461 | ||| | ||||||| | |||| |||| | ||||| | || | | ||| ||| Sbjct 1500 A-CTGCGCGATGTCGAGGTGGCTGGCGTCAAACTCCAGCCGCCCGCTGGCGATGGTGTCG 1442 Query 1462 TTTGCCTTGAGCACCATTGCGGTTTTCATTTCCGGCGTGTAGCGGATATCACGCGCG-GC 1520 | ||||| ||||||| ||| |||||| | ||| | ||| | || | | || Sbjct 1441 TAAGCCTTCAGCACCAGGGCGTTTTTCACGTTCGGGTTATAGACAAACTCCTTCACCTGC 1382 Query 1521 GGGATAGAACGAGCGCACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATACC 1580 |||| |||| | || || | | ||||| | |||| |||||||| || || || Sbjct 1381 GGGA-AGAAGGCTTTGACATTCTCGTATACGCCAAGCCCGACGCCGGTGGAGTCGATGCC 1323 Query 1581 GATGTATTCGACGTTGTATTTTTCGGTGAGTTTGCGGATGGATTCCGCCTGGGTGGCAAA 1640 ||| || |||||| || | | || || | | ||||| || ||||| | || Sbjct 1322 GATATAGGTGACGTTATACTGCTGCGTCAGCGTCCTGATGGCGTCAGCCTGCGCCCGGAA 1263 Query 1641 GTCCATGCCTTTCCACTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACCGG 1700 |||||| || |||||||||||||||||| || | ||| ||||| || | ||| | || Sbjct 1262 GTCCATCCCGCGCCACTGGTGACGCTCAAGGATGCGGAACTTGCCGCCCGGCACGGCAGG 1203 Query 1701 CGGTGCCAGTACCACGCATCCGGCGCTGTCGCCA--CGGTGTGAC-------GGGTCGTA 1751 |||||||| ||||||||||||||||||||||| | | || | |||||||| Sbjct 1202 CGGTGCCATGACCACGCATCCGGCGCTGTCGCCGTTCTGCGTTCCCTTCGCGGGGTCGTA 1143 Query 1752 ACCAATCCATACCGGGCGGGAGCCGAACGGATTGGCG----GCAAACGGCGCATAGTCTT 1807 || ||||| || |||||||||| ||| || | || | || |||| Sbjct 1142 GCCGATCCACACTTCTTTCCAGCCGAACGG----GCGCAGCGCCAGCGCCTCAAAGTCGG 1087 Query 1808 CCCATTCTTCC-AGCGTGTCGACCATGCAGCGTTGCAGCTCCTCGAACGGGAACACCGAT 1866 ||| ||||| ||| |||| |||||||| |||||| | | | |||| ||||| Sbjct 1086 TCCAGACTTCCCAGC-TGTCCACCATGCATTTCTGCAGCATGGCCAGCTGGAATACCGAC 1028 Query 1867 GCCTTGTCGTCAACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCG 1926 ||| ||||| | ||| | ||||| | |||||| | |||| || | ||||| || Sbjct 1027 GCCAGATCGTCCATAAAGACGCACATCAGCAGGTTCTGGTAATCCTCCGGGCTGTAG-CG 969 Query 1927 CGTTTG-AGCTGCTCAATGTCGAACAGCGTGCAGCCGCCTTTCAGGGCGTCCTCAATGGT 1985 ||| | |||||||| | ||| ||||| |||||||| || || || |||| ||| Sbjct 968 CGTGCGCAGCTGCTCCAGGTCAAACAGGTCACAGCCGCCGCGCACCGCATCTTCAACGGT 909 Query 1986 GACAATCTGTCGCCACTGGCCGTCCGCACAGAGAAGCCCACCGGCAAGGGCGTTATGACT 2045 ||| ||||| || |||||||||| | ||||| | || |||| || | | ||| || Sbjct 908 GACGATCTGGCGAAACTGGCCGTCTTCGCAGAGGCGACCGGCGGCCAGTGACTGATGGCT 849 Query 2046 GACGTCGATTTCCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTAAACAGTTCACCCGA 2105 || ||| || || || || || || |||| || ||| ||| ||| | ||| || Sbjct 848 GAGGTCAATATCAACCCGGTCAGCTT---TGGCCCGGCCCTTGTTGAACTGCGAACCGGA 792 Query 2106 CCAGAACGGGTAGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGAGCGCAG 2165 ||||||||| |||||| ||||| || ||||||||||||| || ||||| |||| Sbjct 791 CCAGAACGGATAGGCGCTGTGCGTGAGGCTGGACGGGGTGGAAAAGTAGGTTTCGCGCCA 732 Query 2166 GTGACTCTGTG-AG-GCCATACCTGATGCCACCTTACGCAGTACCTGAAAATTCGGGATC 2223 | || |||| || ||||| || || ||||| || ||||| ||||||| ||||||||| Sbjct 731 CTT-CT-TGTGCAGCGCCATGCCGGACGCCACTTTCTGCAGTTCCTGAAACTTCGGGATC 674 Query 2224 CAGAAAATCTCATCGACGTACAGGTCGCCGTTATGACTCTGCGCGGTGTTGGAGTTGGTG 2283 |||||| ||||| | |||||| | ||||| || |||||||||||| || ||||||| Sbjct 673 CAGAAATATTCATCCAGGTACAGATTGCCGTGATAGCTCTGCGCGGTGCGGGCGTTGGTG 614 Query 2284 CCGAGAAAAATCAGTTTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCA 2343 || || ||| ||| || |||||| || | | || ||||||| || ||||||| Sbjct 613 CCCAGGAAATACAGGCACGCACCGTTACTGAGC--GTCA-TCGGGTCGCCCTTCAGGTCT 557 Query 2344 ACGTCAACCAGACGGGCAAAGGCGATGATGTATTCGCGGAACACATACGCCTGTGTTTTA 2403 ||||| ||| |||||||| | |||||||| | ||| || | |||||| | ||| Sbjct 556 ACGTCCACCTCGCGGGCAAATTCAATGATGTACTGCTTGAAGACGTGCGCCTGCGCCTTA 497 Query 2404 CTGGCCGACAGAAAAATCTGGTTATGACCGGTTTTCAGGGCACGCAGCAGCGCCTCGCGG 2463 ||||| || || || ||||| || | ||||| |||| ||| | ||||||||||||| Sbjct 496 CTGGCTGAAAGGAATATCTGATTGCGCCCGGTGGTCAGCGCATCGATCAGCGCCTCGCGG 437 Query 2464 GAAAAATAAAACGTCGCGCCAATCTGGCGGGATTTCAGGATATCGCGGATGCGGTGCTCA 2523 | |||| | || || || ||||||||||| || ||||| | | ||||| | || || | Sbjct 436 GCAAAAAAGAAGGTGGCCCCAATCTGGCGCGACTTCAGCAGGTTGCGGACGGAGTACTTA 377 Query 2524 AGCCCGGCACGATACCAGTGCAGCTGATAGTCGAAAGACTGCTCAAAGAAAATCTGCTCC 2583 |||||| |||| || |||| ||| |||| | | ||||| || || | Sbjct 376 TTCCCGGCCTCCCACCACTGGCGCTGGTAGCCGAACATCGAGCCGTGGAAAACCTCCTGC 317 Query 2584 AGCTTTTCGATGGCCTCGTCACTGAAAAAATTCTTTTTC---GGTTTGCGCCGTCCGCCT 2640 ||||| || || ||||| ||||| | ||||||| | || || ||| | ||| Sbjct 316 AGCTTCTCAATCTGTTCGTCGCTGAACAGGTTCTTTTCCGGGGGCTTACGCGG---GCCC 260 Query 2641 TTGTTACGGTTAGCGACGTTCGGATTAAGGTCTGCCTCGTTGCCGGTCTGGCTGTAGCGG 2700 ||||| ||||| | ||||||||||| ||||| || || |||||| | |||| | | Sbjct 259 TTGTTGCGGTTCTCCACGTTCGGATTCAGGTCCGCTTCATTGCCGCCATTGCTGAATTTG 200 Query 2701 TTGACCCGTGCCAGTCGTTCAATCTGGCGTCCCAGCAGGTCAATTTCCTTGAAGTCACCG 2760 || ||| || | || || ||| || |||||||||| |||||||||||||| Sbjct 199 CCGATCCGGGCATGGCGCTCGGACTGCCGCGCCAGCAGGTCGATTTCCTTGAAGTCCTTT 140 Query 2761 CCGGTTTTCTGTGGTTTGATGATGAGCTGG 2790 || ||||| || |||||||||||| Sbjct 139 CCTTCCTTCTGCTCCTTCATGATGAGCTGG 110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107265487949700