Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq21746 109 5e-19 seq280 89.7 4e-13 >seq21746 Length=7614 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| |||||||| | |||||||| ||||| || || || || Sbjct 2193 AAAATGCAGATTTTCGTCAAAACACTTACGGGCAAGACCATCACTTTGGAGGTCGAGCCT 2252 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || || | | || ||||| ||||| |||||||||||| | || |||| Sbjct 2253 TCTGACACTATCGAAAATGTCAAGGCTAAAATCCAAGATAAAGAAGGTATACCACCAGAT 2312 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 |||||| | | || || || ||||| |||||||||||| ||| || |||| ||| Sbjct 2313 CAACAACGTTTGATTTTCGCCGGCAAGCAATTGGAAGATGGTCGTACTTTGTCCGACTAC 2372 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || ||||||||||| || || || ||| ||||||| || Sbjct 2373 AACATTCAAAAGGAGTCAACCCTCCACTTGGTGTTGCG 2410 >seq280 Length=341618 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | || ||| |||| || |||||||| ||| || || || || Sbjct 104883 ATGCAGATCTTCGTGAAGACACTGACCGGTAAAACCATCACCTTGGAGGTTGAGCCGTCA 104824 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || ||||| ||||| |||||| | || ||||||| Sbjct 104823 GACACCATCGAAAATGTTAAAGCCAAAATCCAGGATAAGGAAGGTATTCCTCCAGATCAA 104764 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || | | || ||||| || ||||| |||||||| | ||| || |||| |||||| Sbjct 104763 CAGCGTTTGATTTTTGCCGGTAAACAGTTGGAAGACGGCCGTACTTTGTCCGACTACAAT 104704 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| |||||||| ||||| || ||||| | || | || ||||| Sbjct 104703 ATTCAGAAGGAATCGACTCTCCATTTGGTGCTTCGTCTTCGCGGAGG 104657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410362879191380