Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq81517 143 2e-29 >seq81517 Length=1088 Score = 143 bits (158), Expect = 2e-29 Identities = 352/523 (67%), Gaps = 8/523 (2%) Strand=Plus/Plus Query 97002 TAGTGTTGGGAAA-GGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGAT 97060 |||| |||||||| || | ||| | || | | ||| ||| | | | ||||| |||| Sbjct 432 TAGT-TTGGGAAATGGACGGGGTTTACGTGCTATCTGTTCTTTTAAGGGTTCAATATGAT 490 Query 97061 TCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAG-TG 97119 | ||| | || ||||| || | |||||| | |||||||| ||| | || || | | Sbjct 491 TGTTATAGACATGGGCATCACCAAGAGTGTGCACGAATTCTCCGGGA-CGAAGTCCGGTC 549 Query 97120 ACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGT 97179 || || || |||||| | ||||| | || ||| || || || || ||||| || | | Sbjct 550 ACGTGTGCAATCATATATGTTAACAAAGCATAAGAGGCGATATTGAATGGCACGCCCAAT 609 Query 97180 CCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAAC 97239 ||||| ||||| | |||||| |||||||| || |||| |||| || |||| Sbjct 610 CCCATGTCAGCGCTACGTTGATACAACTGACAAGACAGCTCACCATTTGCAACGAAAAAT 669 Query 97240 TGACTCAATACA-TGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGC 97298 || | | ||| ||||| || || | ||||||| |||| || | | |||||| || Sbjct 670 TGTG-CTAGACAATGACAAGGAGGTAGTGCCATTTGCGGAATGTCAAGGGGATTCCACGC 728 Query 97299 ACACATCAACATTCTTCTATCGGTTGGGTTTGTGT-GTATGGTATTAATTATCTGCTTTA 97357 | |||| | || | | ||| || ||||||| | | || |||| ||||| | | | Sbjct 729 AGACATTATTATGCGACGATCA-TTCGGTTTGTTTCGGATTGTATCAATTACATTTTGAA 787 Query 97358 ATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAAT 97417 |||||| |||||||| || ||||| | || | |||||| |||||||||| Sbjct 788 GTTGATCTACGCCTTCACCCGAGTAATTATCGTTGCATGTTCGATATTTGGCTCCAAAAT 847 Query 97418 GCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAA 97477 | | ||| || |||||||| || || || | || |||||||| | || | |||||| Sbjct 848 GGCGCCACTGAAATCCATACACGGGGCCCAAATCACCTTCTTCGCGATTATGAAAACCAC 907 Query 97478 GCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTG 97520 ||||| ||| | | || | ||| | ||||||||||| Sbjct 908 ATTTATCCAAAAACTCTCGAGTACTATTCCCGTCCCAAATGTG 950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346417695311900