Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq322 156 6e-33 seq81517 140 5e-28 seq4530 134 2e-26 seq21746 123 4e-23 seq280 122 1e-22 >seq322 Length=316913 Score = 156 bits (172), Expect = 6e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| ||||| ||||| ||||| ||| | ||| |||| | Sbjct 56428 ATGCAAATTTTCGTTAAGACCCTAACGGGCAAGACTATTACTCTTGAGGTTGAGCCTTCG 56369 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| || | || |||||||||||| || ||||| || || || |||||| Sbjct 56368 GATACAATTGAGCATGTTAAGGCGAAAATTCAAGACAAGGAAGGGATCCCTCCAGATCAA 56309 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || ||||| |||||||| |||||||| ||| | ||||| |||| ||||| ||| Sbjct 56308 CAGCGCCTAATTTTCGCAGGAAAGCAATTAGAAGATGGGCGAACCTTAGCCGATTACAAT 56249 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||||| ||||| ||||| ||||| || Sbjct 56248 ATTCAAAAGGAATCTACTTTACATTTAGT 56220 Score = 134 bits (148), Expect = 2e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| ||||| |||| ||||| ||| | ||| |||| | Sbjct 38533 ATGCAAATTTTCGTTAAGACCCTAACGCGCAAGACTATTACTCTTGAGGTTGAGCCTTCG 38592 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| || | || ||||||||||| || | ||| || || || |||||| Sbjct 38593 GATACAATTGAGCATGTGAAGGCAAAAATTCAAGACAAGGGAGGGATCCCCCCAGATCAA 38652 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || ||||| ||||||||||||| || ||| | ||||| |||| | ||| ||| Sbjct 38653 CAGCGCCTAATTTTCGCAGGAAAACAATAGGAAGATGGGCGAACCTTAGCCGGTTACAAT 38712 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||||| ||||| ||||| ||||| || Sbjct 38713 ATTCAAAAGGAATCTACTTTACATTTAGT 38741 >seq81517 Length=1088 Score = 140 bits (154), Expect = 5e-28 Identities = 381/575 (66%), Gaps = 9/575 (2%) Strand=Plus/Plus Query 205312 ACTTGTCtttttatttttaattttGGAAATGGGTTTGGTGTACGTTCTAATTGttttttt 205371 |||| | |||||| || ||| |||||||| ||| ||||| ||| |||| |||| Sbjct 415 ACTTCCCGTTTTATAACTAGTTTGGGAAATGGACGGGGTTTACGTGCTATCTGTTCTTTT 474 Query 205372 AATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATAT 205431 || | ||||||||| ||| | ||| |||| ||||| | | || | ||||| | Sbjct 475 AAGGGTTCAATATGATTGTTATAGACATGGGCATCACCAAGAGTGTGCACGAATTC-TCC 533 Query 205432 GGTTTTAAATTAGTTAAA-TGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATT 205490 || || | | | | |||||||||||||| || || ||| |||| || | ||| Sbjct 534 GGGACGAAGTCCGGTCACGTGTGCAATCATATATGTTAACAAAGCATAAGAGGCGATATT 593 Query 205491 AAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTT 205550 ||||| || || || ||||| ||||| | |||||||| ||||| | || | Sbjct 594 GAATGGCACGCCCAATCCCATGTCAGCGCTACGTTGATACAACTGACAAGACAG---CTC 650 Query 205551 ATTATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAAC 205610 | ||| || ||||||| | | |||||||||||| |||| |||| | || Sbjct 651 ACCATTTGCAACGAAAAATTGTGCTAGACAATGACAAGGAGGTAGTGCCATTTGCGGAAT 710 Query 205611 ATCTATAGGATTCCAGGCTGTTAATATTATATTTCTA-GATTCAGGtttattttttattt 205669 || | |||||||| || | | |||||| | | |||| ||||| ||| ||| Sbjct 711 GTCAAGGGGATTCCACGCAGACATTATTATGCGACGATCATTC-GGTTTGTTTCGGATTG 769 Query 205670 tatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATT-TGTATCCATATCA 205728 ||| || | || | | |||||| | |||| | | ||||| | | ||| | Sbjct 770 TATCAATTACATTTTGAAGTTGATCTACGCCTTCACCCGAGTAATTATCGTTGCATGT-T 828 Query 205729 ATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCT 205788 |||||| || |||||||| ||||| ||||| ||||| || || || |||||||||||| Sbjct 829 CGATATTTGGCTCCAAAATGGCGCCACTGAAATCCATACACGGGGCCCAAATCACCTTCT 888 Query 205789 TTTCTATCATTAAAACCACGtttttttatatattttaatgatccattttcatcccaaata 205848 | | || || |||||||| ||| | | | | | | | | ||| | |||||||| Sbjct 889 TCGCGATTATGAAAACCACATTTATCCAAAAACTCTCGAGTACTATTCCCGTCCCAAATG 948 Query 205849 tggattcctttattttttaGAATATTTGTATTAGT 205883 ||||| ||| | |||||| || || | || ||| Sbjct 949 TGGATATTTTTCTCTTTTAGTATTTTCGCATCAGT 983 >seq4530 Length=49833 Score = 134 bits (148), Expect = 2e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| ||||| |||| ||||| ||| | ||| |||| | Sbjct 18307 ATGCAAATTTTCGTTAAGACCCTAACGCGCAAGACTATTACTCTTGAGGTTGAGCCTTCG 18366 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| || | || ||||||||||| || | ||| || || || |||||| Sbjct 18367 GATACAATTGAGCATGTGAAGGCAAAAATTCAAGACAAGGGAGGGATCCCCCCAGATCAA 18426 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || ||||| ||||||||||||| || ||| | ||||| |||| | ||| ||| Sbjct 18427 CAGCGCCTAATTTTCGCAGGAAAACAATAGGAAGATGGGCGAACCTTAGCCGGTTACAAT 18486 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||||| ||||| ||||| ||||| || Sbjct 18487 ATTCAAAAGGAATCTACTTTACATTTAGT 18515 >seq21746 Length=7614 Score = 123 bits (136), Expect = 4e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | || ||||| || ||||| || || ||| | ||| | || | Sbjct 2195 AATGCAGATTTTCGTCAAAACACTTACGGGCAAGACCATCACTTTGGAGGTCGAGCCTTC 2254 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || ||| | || ||||| ||||||||||||||||||||||| ||||| Sbjct 2255 TGACACTATCGAAAATGTCAAGGCTAAAATCCAAGATAAAGAAGGTATACCACCAGATCA 2314 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | ||||| || || || ||||| || ||| |||| || || || || || Sbjct 2315 ACAACGTTTGATTTTCGCCGGCAAGCAATTGGAAGATGGTCGTACTTTGTCCGACTACAA 2374 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || ||||| | || ||||| || ||| | || |||||||| Sbjct 2375 CATTCAAAAGGAGTCAACCCTCCACTTGGTGTTGCGTCTGCGTGGTGGTAT 2425 >seq280 Length=341618 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | || ||| | || |||||||| || ||| | ||| ||||| | Sbjct 106251 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCC 106192 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | ||| ||||| |||||||| |||||||| ||||| |||||| Sbjct 106191 GATACTATCGAAAATGTGAAAGCCAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 106132 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | || || || || || || | || ||| | || || || |||||||| Sbjct 106131 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGATTATAAC 106072 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||||||| || || ||||||| || | ||| | || |||||||| Sbjct 106071 ATACAAAAAGAGTCTACCCTGCATTTAGTCCTGCGTCTCCGTGGTGGTAT 106022 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | || ||| | || |||||||| || ||| | ||| ||||| | Sbjct 114497 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCC 114438 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | ||| ||||| |||||||| |||||||| ||||| |||||| Sbjct 114437 GATACTATCGAAAATGTGAAAGCCAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 114378 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | || || || || || || | || ||| | || || || |||||||| Sbjct 114377 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGATTATAAC 114318 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||||||| || || ||||||| || | ||| | || |||||||| Sbjct 114317 ATACAAAAAGAGTCTACCCTGCATTTAGTCCTGCGTCTCCGTGGTGGTAT 114268 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| ||||| ||||||||||| || | ||| |||| || Sbjct 106023 ATGCAAATCTTCGTGAAGACCCTAACTGGCAAAACTATCACCTTGGAGGTTGAGCCATCA 105964 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| || || |||||||| |||||||| || || ||||| Sbjct 105963 GACACCATCGAAAATGTTAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAG 105904 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | || || || || ||||| | || ||| | || || || || || || Sbjct 105903 CAGCGTTTGATCTTCGCCGGCAAACAGCTTGAAGATGGCCGCACCTTGTCTGACTACAAC 105844 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || ||| |||||||||| | ||| | || |||||||| Sbjct 105843 ATCCAAAAGGAGTCTACTCTGCATTTGGTCCTGCGTCTTCGTGGTGGTAT 105794 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| ||||| ||||||||||| || | ||| |||| || Sbjct 114269 ATGCAAATCTTCGTGAAGACCCTAACTGGCAAAACTATCACCTTGGAGGTTGAGCCATCA 114210 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| || || |||||||| |||||||| || || ||||| Sbjct 114209 GACACCATCGAAAATGTTAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAG 114150 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | || || || || ||||| | || ||| | || || || || || || Sbjct 114149 CAGCGTTTGATCTTCGCCGGCAAACAGCTTGAAGATGGCCGCACCTTGTCTGACTACAAC 114090 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || ||| |||||||||| | ||| | || |||||||| Sbjct 114089 ATCCAAAAGGAGTCTACTCTGCATTTGGTCCTGCGTCTTCGTGGTGGTAT 114040 Score = 96.9 bits (106), Expect = 5e-15 Identities = 164/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| ||||| || ||||| || || | ||| |||| | Sbjct 105339 ATGCAAATCTTCGTGAAGACCCTAACTGGTAAAACCATCACCTTGGAGGTTGAGCCGTCA 105280 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || | || || ||||||||||||||||| || || || |||||| Sbjct 105279 GACACCATCGAAAACGTCAAGGCCAAGATTCAAGATAAAGAAGGCATTCCTCCAGATCAA 105220 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | ||||| || || |||||||| || || | || || || || || || Sbjct 105219 CAACGTTTGATTTTCGCCGGTAAACAATTGGAAGACGGCCGCACCTTGTCGGACTACAAC 105160 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||| || || || | |||||||| | ||| | || |||||||| ||| || Sbjct 105159 ATCCAAAAGGAGTCTACCCTCCATTTGGTCCTGCGTCTTCGCGGTGGTATGCAAATTT 105102 Score = 93.3 bits (102), Expect = 6e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| || || |||||||||||||| | ||| |||| || Sbjct 105568 AATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACTATAACCTTGGAGGTTGAGCCATC 105509 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || | || || |||||||| || |||||||| || || || || Sbjct 105508 CGACACCATTGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCA 105449 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | |||||||| || || || | || || | || || || || || || Sbjct 105448 GCAACGTTTGATTTTTGCTGGTAAGCAGCTCGAAGACGGGCGCACCTTGTCGGACTACAA 105389 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || || | |||||||| | ||| | || |||||||| Sbjct 105388 CATCCAAAAGGAGTCTACCCTCCATTTGGTCCTGCGTCTCCGTGGTGGTAT 105338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754637557856000