Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq180 104 4e-17 >seq180 Length=417715 Score = 104 bits (114), Expect = 4e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 189419 CAACTCGAAAAAGCGGAAACTCATGATCCTCTATGGAACGCGTCACAAATGCAGATGGTG 189478 ||| |||| | || | || || ||| ||| ||||| ||| |||| | || ||| Sbjct 110271 CAATTCGAGCAGGCCCACACACACGATGATCTTTGGAATGCGGCACAGGTTCAATTGGCA 110330 Query 189479 AGAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAATGG 189538 | ||||| ||||||||| ||||| |||| ||||| ||||| || ||||||||||||||| Sbjct 110331 AATGAAGGCAAAATGCATGGTTTTCTACGCATGTACTGGGCAAAAAAGATACTTGAATGG 110390 Query 189539 ACTAGAACACCTGAAGACGCTTTGAGTTATAG-TATCTATTTGAACAACAAGTACGAACT 189597 | || || ||| | || || || || | |||||| ||||| |||| ||| | Sbjct 110391 GCCGCTACGCCGGAACAAGCCTT-AGAAATTGCTATCTACTTGAATGACAAATACAGTTT 110449 Query 189598 AGACGGCACGGATCCTAACGGATACGTAGGT 189628 ||| || |||||| ||||| || |||||| Sbjct 110450 AGATGGACGGGATCCAAACGGCTATGTAGGT 110480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922196631666800