Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq76387 131 1e-25
seq28390 114 8e-21
seq2574 114 8e-21
seq280 104 2e-17
>seq76387
Length=1185
Score = 131 bits (144), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| |||||||| | ||||||||||| | || || ||||| |||||||| || ||
Sbjct 762 CCACCGCGCAGACGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAG 821
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || |||| || | |||||| || ||||| ||||| ||||||||||| |||
Sbjct 822 AGGGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGG 881
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||||||| ||||| ||| | || | || | |||| | | || ||
Sbjct 882 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATGGTATCGCTGGGCTCCACC 941
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | |||||||| ||||||||||| || |||||||||||||||||
Sbjct 942 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 988
Score = 113 bits (124), Expect = 3e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||||||||| | || |||||||| | || || || || ||||||||||| ||
Sbjct 189 CCGCCGCGCAGACGAAGGACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAG 248
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || |||| || | ||||||||| ||||| || || ||||||||||| |||
Sbjct 249 AGGGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGGA 308
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||||||| ||||| ||| | || | || | ||| | | || ||
Sbjct 309 ATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 368
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | ||||| || ||||||||||| || || || |||||||||||
Sbjct 369 TCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 415
Score = 95.1 bits (104), Expect = 8e-15
Identities = 146/207 (71%), Gaps = 1/207 (0%)
Strand=Plus/Plus
Query 34184 AGGTGTAAAGTACTTTCT-TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAA 34242
|| ||||||| ||| | || || |||||||||||| || || |||| || |
Sbjct 554 AGATGTAAAGAGCTTACCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCGTCCTCGAG 613
Query 34243 CTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTAT 34302
|||||||| ||||| ||||| ||||||||||| ||| | || ||||||||| ||
Sbjct 614 TTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTTGGAT 673
Query 34303 CTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCC 34362
||| ||| | || | || | ||| | | || || || | ||||| || |||||
Sbjct 674 CTTCGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCGAGAGTGATCGTCTTGCC 733
Query 34363 GGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||||| || || || |||||||||||
Sbjct 734 GGTGAGGGTCTTAACGAAGATCTGCAT 760
>seq28390
Length=4902
Score = 114 bits (126), Expect = 8e-21
Identities = 140/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| ||||| || |||||||| || || ||| |||| || | ||| || || |||||
Sbjct 498 TCCTTCTGGATATTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGTTTACCGGCGAAG 439
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318
||||| |||||||||||| || | || ||||||||| |||||| ||| | ||
Sbjct 438 ATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTC 379
Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378
| |||| ||| | | ||||| || | |||||||| ||||| ||||| || ||||||
Sbjct 378 TCGATCGTATCAGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACA 319
Query 34379 AAGATCTGCAT 34389
||||| |||||
Sbjct 318 AAGATTTGCAT 308
>seq2574
Length=80092
Score = 114 bits (126), Expect = 8e-21
Identities = 141/190 (74%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261
||||| |||||||||||| |||| ||| |||| || | ||||||||| ||||| ||
Sbjct 58862 TTCTGGATGTTGTAGTCGCTCAGCGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 58921
Query 34262 AGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGC 34320
|| ||||||||||| | |||| | || ||||||||| ||||| ||| | || |
Sbjct 58922 AGTCGCTGCTGGTCAGGCGGG-ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTC 58980
Query 34321 TATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380
|| | ||| | | || || || | |||||||| ||||| ||||| || ||||| ||
Sbjct 58981 GATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAA 59040
Query 34381 GATCTGCATC 34390
||||||||||
Sbjct 59041 GATCTGCATC 59050
>seq280
Length=341618
Score = 104 bits (114), Expect = 2e-17
Identities = 164/230 (71%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| |||||||| | ||| |||| ||| | ||| || || || ||||||||||||||
Sbjct 105568 TCCTCCGCGCAGACGCAGAACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGA 105627
Query 34222 C-AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280
| || || ||| | || || | |||||||| ||||| || | |||||||| || |
Sbjct 105628 CAAGGTG-CGGCCATCTTCGAGTTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGAG 105686
Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCG 34339
| | | ||||||||| ||| || ||||| | | | || | |||| | ||
Sbjct 105687 GAATACCCTCCTTGTCCTGGATC-TTAGCTTTGACGTTCTCAATGGTGTCGGATGGCTCA 105745
Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| |||| |||||||||||| || || || || |||||||| ||||||||
Sbjct 105746 ACCTCCAACGTGATGGTTTTACCAGTTAGGGTCTTCACAAATATCTGCAT 105795
Score = 104 bits (114), Expect = 2e-17
Identities = 164/230 (71%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| |||||||| | ||| |||| ||| | ||| || || || ||||||||||||||
Sbjct 113814 TCCTCCGCGCAGACGCAGAACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGA 113873
Query 34222 C-AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280
| || || ||| | || || | |||||||| ||||| || | |||||||| || |
Sbjct 113874 CAAGGTG-CGGCCATCTTCGAGTTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGAG 113932
Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCG 34339
| | | ||||||||| ||| || ||||| | | | || | |||| | ||
Sbjct 113933 GAATACCCTCCTTGTCCTGGATC-TTAGCTTTGACGTTCTCAATGGTGTCGGATGGCTCA 113991
Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| |||| |||||||||||| || || || || |||||||| ||||||||
Sbjct 113992 ACCTCCAACGTGATGGTTTTACCAGTTAGGGTCTTCACAAATATCTGCAT 114041
Score = 98.7 bits (108), Expect = 6e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| ||||| || | ||||||| || | ||| ||| ||||| || ||||||||||||
Sbjct 104657 CCTCCGCGAAGACGAAGCACCAAATGGAGAGTCGATTCCTTCTGAATATTGTAGTCGGAC 104716
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
| |||| |||| |||||||| || || || ||||| | ||||| || || ||
Sbjct 104717 AAAGTACGGCCGTCTTCCAACTGTTTACCGGCAAAAATCAAACGCTGTTGATCTGGAGGA 104776
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341
| | ||||| || || ||| ||||| | || | || | || | || || ||
Sbjct 104777 ATACCTTCCTTATCCTGGAT-TTTGGCTTTAACATTTTCGATGGTGTCTGACGGCTCAAC 104835
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| ||||||||||| ||||| || || ||||| |||||||||||
Sbjct 104836 CTCCAAGGTGATGGTTTTACCGGTCAGTGTCTTCACGAAGATCTGCAT 104883
Score = 82.4 bits (90), Expect = 5e-11
Identities = 137/193 (71%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
||||| |||||||| || ||||||| | || ||| | || || | ||||||||| |||||
Sbjct 106061 TCTTTTTGTATGTTATAATCGGACAAGGTG-CGGCCATCTTCGAGCTGCTTGCCGGCGAA 106119
Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316
|| | ||||| || || || | | ||||| || || ||| ||||| | ||
Sbjct 106120 GATTAAACGCTGTTGATCTGGTGGGATACCTTCCTTATCTTGGAT-TTTGGCTTTCACAT 106178
Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376
| || | ||||| | ||| || |||| |||||||||||||| || | ||||| |
Sbjct 106179 TTTCGATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTTTTGCCAGTCAATGTTTTAA 106238
Query 34377 CAAAGATCTGCAT 34389
|||| || |||||
Sbjct 106239 CAAATATTTGCAT 106251
Score = 82.4 bits (90), Expect = 5e-11
Identities = 137/193 (71%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
||||| |||||||| || ||||||| | || ||| | || || | ||||||||| |||||
Sbjct 114307 TCTTTTTGTATGTTATAATCGGACAAGGTG-CGGCCATCTTCGAGCTGCTTGCCGGCGAA 114365
Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316
|| | ||||| || || || | | ||||| || || ||| ||||| | ||
Sbjct 114366 GATTAAACGCTGTTGATCTGGTGGGATACCTTCCTTATCTTGGAT-TTTGGCTTTCACAT 114424
Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376
| || | ||||| | ||| || |||| |||||||||||||| || | ||||| |
Sbjct 114425 TTTCGATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTTTTGCCAGTCAATGTTTTAA 114484
Query 34377 CAAAGATCTGCAT 34389
|||| || |||||
Sbjct 114485 CAAATATTTGCAT 114497
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 322730742075200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |