Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq76387 131 1e-25 seq28390 114 8e-21 seq2574 114 8e-21 seq280 104 2e-17 >seq76387 Length=1185 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||||||||| | || || ||||| |||||||| || || Sbjct 762 CCACCGCGCAGACGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAG 821 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | |||||| || ||||| ||||| ||||||||||| ||| Sbjct 822 AGGGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGG 881 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | || | |||| | | || || Sbjct 882 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATGGTATCGCTGGGCTCCACC 941 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||||||||| || ||||||||||||||||| Sbjct 942 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 988 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | || |||||||| | || || || || ||||||||||| || Sbjct 189 CCGCCGCGCAGACGAAGGACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAG 248 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | ||||||||| ||||| || || ||||||||||| ||| Sbjct 249 AGGGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGGA 308 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | || | ||| | | || || Sbjct 309 ATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 368 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || ||||||||||| || || || ||||||||||| Sbjct 369 TCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 415 Score = 95.1 bits (104), Expect = 8e-15 Identities = 146/207 (71%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 34184 AGGTGTAAAGTACTTTCT-TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAA 34242 || ||||||| ||| | || || |||||||||||| || || |||| || | Sbjct 554 AGATGTAAAGAGCTTACCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCGTCCTCGAG 613 Query 34243 CTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTAT 34302 |||||||| ||||| ||||| ||||||||||| ||| | || ||||||||| || Sbjct 614 TTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTTGGAT 673 Query 34303 CTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCC 34362 ||| ||| | || | || | ||| | | || || || | ||||| || ||||| Sbjct 674 CTTCGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCGAGAGTGATCGTCTTGCC 733 Query 34363 GGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||| || || || ||||||||||| Sbjct 734 GGTGAGGGTCTTAACGAAGATCTGCAT 760 >seq28390 Length=4902 Score = 114 bits (126), Expect = 8e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| || |||||||| || || ||| |||| || | ||| || || ||||| Sbjct 498 TCCTTCTGGATATTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGTTTACCGGCGAAG 439 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| |||||||||||| || | || ||||||||| |||||| ||| | || Sbjct 438 ATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTC 379 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||| ||| | | ||||| || | |||||||| ||||| ||||| || |||||| Sbjct 378 TCGATCGTATCAGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACA 319 Query 34379 AAGATCTGCAT 34389 ||||| ||||| Sbjct 318 AAGATTTGCAT 308 >seq2574 Length=80092 Score = 114 bits (126), Expect = 8e-21 Identities = 141/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| |||||||||||| |||| ||| |||| || | ||||||||| ||||| || Sbjct 58862 TTCTGGATGTTGTAGTCGCTCAGCGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 58921 Query 34262 AGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGC 34320 || ||||||||||| | |||| | || ||||||||| ||||| ||| | || | Sbjct 58922 AGTCGCTGCTGGTCAGGCGGG-ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTC 58980 Query 34321 TATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380 || | ||| | | || || || | |||||||| ||||| ||||| || ||||| || Sbjct 58981 GATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAA 59040 Query 34381 GATCTGCATC 34390 |||||||||| Sbjct 59041 GATCTGCATC 59050 >seq280 Length=341618 Score = 104 bits (114), Expect = 2e-17 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| |||||||| | ||| |||| ||| | ||| || || || |||||||||||||| Sbjct 105568 TCCTCCGCGCAGACGCAGAACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGA 105627 Query 34222 C-AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 | || || ||| | || || | |||||||| ||||| || | |||||||| || | Sbjct 105628 CAAGGTG-CGGCCATCTTCGAGTTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGAG 105686 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCG 34339 | | | ||||||||| ||| || ||||| | | | || | |||| | || Sbjct 105687 GAATACCCTCCTTGTCCTGGATC-TTAGCTTTGACGTTCTCAATGGTGTCGGATGGCTCA 105745 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| |||||||||||| || || || || |||||||| |||||||| Sbjct 105746 ACCTCCAACGTGATGGTTTTACCAGTTAGGGTCTTCACAAATATCTGCAT 105795 Score = 104 bits (114), Expect = 2e-17 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| |||||||| | ||| |||| ||| | ||| || || || |||||||||||||| Sbjct 113814 TCCTCCGCGCAGACGCAGAACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGA 113873 Query 34222 C-AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 | || || ||| | || || | |||||||| ||||| || | |||||||| || | Sbjct 113874 CAAGGTG-CGGCCATCTTCGAGTTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGAG 113932 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCG 34339 | | | ||||||||| ||| || ||||| | | | || | |||| | || Sbjct 113933 GAATACCCTCCTTGTCCTGGATC-TTAGCTTTGACGTTCTCAATGGTGTCGGATGGCTCA 113991 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| |||||||||||| || || || || |||||||| |||||||| Sbjct 113992 ACCTCCAACGTGATGGTTTTACCAGTTAGGGTCTTCACAAATATCTGCAT 114041 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||||||| || | ||| ||| ||||| || |||||||||||| Sbjct 104657 CCTCCGCGAAGACGAAGCACCAAATGGAGAGTCGATTCCTTCTGAATATTGTAGTCGGAC 104716 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | |||| |||| |||||||| || || || ||||| | ||||| || || || Sbjct 104717 AAAGTACGGCCGTCTTCCAACTGTTTACCGGCAAAAATCAAACGCTGTTGATCTGGAGGA 104776 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||| || || ||| ||||| | || | || | || | || || || Sbjct 104777 ATACCTTCCTTATCCTGGAT-TTTGGCTTTAACATTTTCGATGGTGTCTGACGGCTCAAC 104835 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||||||||| ||||| || || ||||| ||||||||||| Sbjct 104836 CTCCAAGGTGATGGTTTTACCGGTCAGTGTCTTCACGAAGATCTGCAT 104883 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||| |||||||| || ||||||| | || ||| | || || | ||||||||| ||||| Sbjct 106061 TCTTTTTGTATGTTATAATCGGACAAGGTG-CGGCCATCTTCGAGCTGCTTGCCGGCGAA 106119 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 || | ||||| || || || | | ||||| || || ||| ||||| | || Sbjct 106120 GATTAAACGCTGTTGATCTGGTGGGATACCTTCCTTATCTTGGAT-TTTGGCTTTCACAT 106178 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | ||||| | ||| || |||| |||||||||||||| || | ||||| | Sbjct 106179 TTTCGATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTTTTGCCAGTCAATGTTTTAA 106238 Query 34377 CAAAGATCTGCAT 34389 |||| || ||||| Sbjct 106239 CAAATATTTGCAT 106251 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||| |||||||| || ||||||| | || ||| | || || | ||||||||| ||||| Sbjct 114307 TCTTTTTGTATGTTATAATCGGACAAGGTG-CGGCCATCTTCGAGCTGCTTGCCGGCGAA 114365 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 || | ||||| || || || | | ||||| || || ||| ||||| | || Sbjct 114366 GATTAAACGCTGTTGATCTGGTGGGATACCTTCCTTATCTTGGAT-TTTGGCTTTCACAT 114424 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | ||||| | ||| || |||| |||||||||||||| || | ||||| | Sbjct 114425 TTTCGATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTTTTGCCAGTCAATGTTTTAA 114484 Query 34377 CAAAGATCTGCAT 34389 |||| || ||||| Sbjct 114485 CAAATATTTGCAT 114497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322730742075200