Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq22 233 2e-56 seq59797 89.7 5e-13 >seq22 Length=933496 Score = 233 bits (258), Expect = 2e-56 Identities = 493/727 (68%), Gaps = 10/727 (1%) Strand=Plus/Minus Query 16048 TCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACA 16107 ||||| || | || || | ||| ||||||||||| ||||| | ||||| | || Sbjct 329820 TCCCAGCTCGACCAGCAAGCGATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCA 329761 Query 16108 GTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAAC 16167 ||||| || || || || ||||| | || || ||||| || | || ||| || ||||| Sbjct 329760 ATTCATGCCAATCAAATTCACAGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAAC 329701 Query 16168 CGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAG-TGTTTAA 16226 |||||| || || || | | ||| | || | | ||| || |||| | Sbjct 329700 AGCTTCAGCAATGATTTCAATAA-TACGGTCCCTACTTGGCTTCTGAATGAGGTGTTGGA 329642 Query 16227 ACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAA 16286 |||| | ||||||||||| ||||| |||||||||||||| |||| ||| || || | Sbjct 329641 ACATCAGGCAAGCAAAATCGCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGA 329582 Query 16287 ATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAG 16346 |||| | ||| |||||||| || ||||| || | |||||| || | ||||| ||| Sbjct 329581 ATGTCAAACCAGGCATTAGGCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCAC 329522 Query 16347 AAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTT---CTAt 16403 |||||| || |||||||| ||||||||||| | | || || || | ||| | || Sbjct 329521 TAAAGAAAATGCCTTCAACCGCGGCAAATGCTATTATACGTTCGCC-AAAGTTGGCCGAT 329463 Query 16404 ttttactttctatccattttttagcccaatttgctttttgtttAACA-CAGTTCATGTTC 16462 || | | ||||| ||||||| || || | |||||| ||| ||| || Sbjct 329462 TTCGA--TGAAATCCACGCCAGTGCCCAATCAGCCTTGCGCTTAACAGCAG-GCATCGTC 329406 Query 16463 TCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGT 16522 || || ||||| || || |||| ||| |||| ||| |||||| ||||| |||| | Sbjct 329405 TCAATAGCATTGAACAAGTAATCCCTTTGCTTGCCATCCTTAATATATGTATCAATTAAT 329346 Query 16523 AAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTA 16582 | || |||||||| ||||| | ||||||||| || || ||||| ||||| ||||| | Sbjct 329345 ATGCTGTACATTTCAGAATGCACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGC 329286 Query 16583 GCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCA 16642 || || | ||||| ||||| | || | ||| |||||||||| || || || ||| Sbjct 329285 GCCTCTGTGATTTGAACTTCTTGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCA 329226 Query 16643 TCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGT 16702 ||| || ||||| || || | | ||| ||| |||| ||| || || | || Sbjct 329225 TCGGAGGCGGCAAAGAATGCCAAAACGTGCGAAATGAAATGGCGTTCATTGTCGGTGAGA 329166 Query 16703 TTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCA 16762 ||| ||| | |||||| || | || |||||||| || ||||| || || || Sbjct 329165 CGCGCCCAATCATCCATATCTTTGGAAAGGTCAACCTCTTCCACCGTCCAGAAGGATGCT 329106 Query 16763 ACAGCCT 16769 | |||| Sbjct 329105 TCTGCCT 329099 >seq59797 Length=1646 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 16271 ATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATA 16330 ||||| || || || ||||| | ||| ||||| | |||| || || | ||| || || Sbjct 1634 ATTAATTCATTAGAGAATGTCAAACCAGGCATCAAACCTCTCTTCTTGAGCCAGAAAATG 1575 Query 16331 GCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCA 16390 | |||||||||||||| ||||| |||||||| || || |||||||| || | || |||| Sbjct 1574 GATGCAAATGAACCAGAGAAGAAAATACCTTCTACGGCAGCAAATGCTACTAGTCTCTCA 1515 Query 16391 CC 16392 || Sbjct 1514 CC 1513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462010926062000