Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq22 233 2e-56
seq59797 89.7 5e-13
>seq22
Length=933496
Score = 233 bits (258), Expect = 2e-56
Identities = 493/727 (68%), Gaps = 10/727 (1%)
Strand=Plus/Minus
Query 16048 TCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACA 16107
||||| || | || || | ||| ||||||||||| ||||| | ||||| | ||
Sbjct 329820 TCCCAGCTCGACCAGCAAGCGATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCA 329761
Query 16108 GTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAAC 16167
||||| || || || || ||||| | || || ||||| || | || ||| || |||||
Sbjct 329760 ATTCATGCCAATCAAATTCACAGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAAC 329701
Query 16168 CGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAG-TGTTTAA 16226
|||||| || || || | | ||| | || | | ||| || |||| |
Sbjct 329700 AGCTTCAGCAATGATTTCAATAA-TACGGTCCCTACTTGGCTTCTGAATGAGGTGTTGGA 329642
Query 16227 ACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAA 16286
|||| | ||||||||||| ||||| |||||||||||||| |||| ||| || || |
Sbjct 329641 ACATCAGGCAAGCAAAATCGCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGA 329582
Query 16287 ATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAG 16346
|||| | ||| |||||||| || ||||| || | |||||| || | ||||| |||
Sbjct 329581 ATGTCAAACCAGGCATTAGGCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCAC 329522
Query 16347 AAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTT---CTAt 16403
|||||| || |||||||| ||||||||||| | | || || || | ||| | ||
Sbjct 329521 TAAAGAAAATGCCTTCAACCGCGGCAAATGCTATTATACGTTCGCC-AAAGTTGGCCGAT 329463
Query 16404 ttttactttctatccattttttagcccaatttgctttttgtttAACA-CAGTTCATGTTC 16462
|| | | ||||| ||||||| || || | |||||| ||| ||| ||
Sbjct 329462 TTCGA--TGAAATCCACGCCAGTGCCCAATCAGCCTTGCGCTTAACAGCAG-GCATCGTC 329406
Query 16463 TCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGT 16522
|| || ||||| || || |||| ||| |||| ||| |||||| ||||| |||| |
Sbjct 329405 TCAATAGCATTGAACAAGTAATCCCTTTGCTTGCCATCCTTAATATATGTATCAATTAAT 329346
Query 16523 AAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTA 16582
| || |||||||| ||||| | ||||||||| || || ||||| ||||| ||||| |
Sbjct 329345 ATGCTGTACATTTCAGAATGCACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGC 329286
Query 16583 GCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCA 16642
|| || | ||||| ||||| | || | ||| |||||||||| || || || |||
Sbjct 329285 GCCTCTGTGATTTGAACTTCTTGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCA 329226
Query 16643 TCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGT 16702
||| || ||||| || || | | ||| ||| |||| ||| || || | ||
Sbjct 329225 TCGGAGGCGGCAAAGAATGCCAAAACGTGCGAAATGAAATGGCGTTCATTGTCGGTGAGA 329166
Query 16703 TTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCA 16762
||| ||| | |||||| || | || |||||||| || ||||| || || ||
Sbjct 329165 CGCGCCCAATCATCCATATCTTTGGAAAGGTCAACCTCTTCCACCGTCCAGAAGGATGCT 329106
Query 16763 ACAGCCT 16769
| ||||
Sbjct 329105 TCTGCCT 329099
>seq59797
Length=1646
Score = 89.7 bits (98), Expect = 5e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 16271 ATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATA 16330
||||| || || || ||||| | ||| ||||| | |||| || || | ||| || ||
Sbjct 1634 ATTAATTCATTAGAGAATGTCAAACCAGGCATCAAACCTCTCTTCTTGAGCCAGAAAATG 1575
Query 16331 GCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCA 16390
| |||||||||||||| ||||| |||||||| || || |||||||| || | || ||||
Sbjct 1574 GATGCAAATGAACCAGAGAAGAAAATACCTTCTACGGCAGCAAATGCTACTAGTCTCTCA 1515
Query 16391 CC 16392
||
Sbjct 1514 CC 1513
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462010926062000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |