Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_002686.2
Length=124784
Score E
Sequences producing significant alignments: (Bits) Value
seq81517 190 2e-43
>seq81517
Length=1088
Score = 190 bits (210), Expect = 2e-43
Identities = 318/457 (70%), Gaps = 2/457 (0%)
Strand=Plus/Minus
Query 20196 TGGATTTGACAACCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACA 20255
||| ||| | || || |||| || |||||||| || |||||||||||||| ||| | ||
Sbjct 906 TGGTTTTCATAATCGCGAAGAAGGTGATTTGGGCCCCGTGTATGGATTTCAGTGGCGCCA 847
Query 20256 TTTTGGAGCTGAATATGTTGACATG-AACACAAATTATTTTGGACAAGGAGTAGATCAAT 20314
||||||||| ||||| ||||| ||| ||||| | || |||| |||||||||
Sbjct 846 TTTTGGAGCCAAATATCGA-ACATGCAACGATAATTACTCGGGTGAAGGCGTAGATCAAC 788
Query 20315 TACAAAATGTTATTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCG 20374
| |||||||| ||| || ||| || || || || || | | || || | | |
Sbjct 787 TTCAAAATGTAATTGATACAATCCGAAACAAACCGAATGATCGTCGCATAATAATGTCTG 728
Query 20375 CCTGGAACGCTAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAAT 20434
| ||||| | || | || |||||| | ||||| |||||| ||| ||||
Sbjct 727 CGTGGAATCCCCTTGACATTCCGCAAATGGCACTACCTCCTTGTCATTGTCTAGCACAAT 668
Query 20435 TTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGAC 20494
||| |||||| ||| ||| |||| ||||| |||||||||| |||||| ||||||
Sbjct 667 TTTTCGTTGCAAATGGTGAGCTGTCTTGTCAGTTGTATCAACGTAGCGCTGACATGGGAT 608
Query 20495 TGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTA 20554
|||| || || |||||||| || |||||| || | || |||||||||||||| || |
Sbjct 607 TGGGCGTGCCATTCAATATCGCCTCTTATGCTTTGTTAACATATATGATTGCACACGTGA 548
Query 20555 CAGATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATC 20614
| | | | || || || || ||||| | || || || ||| | || ||||
Sbjct 547 CCGGACTTCGTCCCGGAGAATTCGTGCACACTCTTGGTGATGCCCATGTCTATAACAATC 488
Query 20615 ATATAGAACCTTTAAAATTACAGTTAACACGACAACC 20651
|||| ||||| |||||| |||| || |||| ||||
Sbjct 487 ATATTGAACCCTTAAAAGAACAGATAGCACGTAAACC 451
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398762345683150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |