Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq32170 127 4e-24 >seq32170 Length=3971 Score = 127 bits (140), Expect = 4e-24 Identities = 277/413 (67%), Gaps = 9/413 (2%) Strand=Plus/Plus Query 249031 CAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGAC 249090 |||||| ||| |||||||| || | | || ||||| | || ||||| || ||| Sbjct 3434 CAGCTGTCCTCCTGCTTTCTGCTGACGCTCTCCGAGGACTCGATTGAGGGCATCTACGAC 3493 Query 249091 ACGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCC 249150 ||||| || ||| || | || || || | || ||||| || || || ||| | Sbjct 3494 ACGCTGAAGCAGTGCGCCATCATCTCCAAGTCGGCCGGCGGCATTGGCGTCAACGTGCAC 3553 Query 249151 AACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTA 249210 |||||| || ||| | ||||||| || ||||| || ||||| |||| | || Sbjct 3554 TGCATCCGCGCCGCGGGCACCTACATCAGCGGCACAAACGGCGTCAGCAATGGGCTGGTG 3613 Query 249211 CCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGA 249267 || | || || || | ||||||| | | | | |||||| |||| | || Sbjct 3614 CCGATGCTGCGCGTCTACAACAACACCGCCCGCTACGTGGACCAGGGCGGGAACAAGCGC 3673 Query 249268 AAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGAC 249327 |||| |||| ||||| || | ||| |||||||||||| || || ||||| || ||| Sbjct 3674 CCGGGGGCGTTTGCCATCTACCTCGAACCGTGGCACGCCGACATCTTCGAGTTTCTCGAC 3733 Query 249328 TTGAAAAAGAACAACGGC---AACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTG 249384 || ||||||| |||| | |||||| | || || ||||||||||||| | || Sbjct 3734 CTGCGCAAGAACACCGGCTCGGAGGAGCTC---CGTGCCCGCGACCTCTTCTACGCCATG 3790 Query 249385 TGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCT 249437 ||||| | ||| | || ||| |||||| |||| ||||||| ||| |||| Sbjct 3791 TGGGTGCCGGACCTCTTTATGAAGCGCGTCCAGGCGGACGGCGTCTGGTCGCT 3843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1072574026034560