Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq32170 127 4e-24
>seq32170
Length=3971
Score = 127 bits (140), Expect = 4e-24
Identities = 277/413 (67%), Gaps = 9/413 (2%)
Strand=Plus/Plus
Query 249031 CAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGAC 249090
|||||| ||| |||||||| || | | || ||||| | || ||||| || |||
Sbjct 3434 CAGCTGTCCTCCTGCTTTCTGCTGACGCTCTCCGAGGACTCGATTGAGGGCATCTACGAC 3493
Query 249091 ACGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCC 249150
||||| || ||| || | || || || | || ||||| || || || ||| |
Sbjct 3494 ACGCTGAAGCAGTGCGCCATCATCTCCAAGTCGGCCGGCGGCATTGGCGTCAACGTGCAC 3553
Query 249151 AACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTA 249210
|||||| || ||| | ||||||| || ||||| || ||||| |||| | ||
Sbjct 3554 TGCATCCGCGCCGCGGGCACCTACATCAGCGGCACAAACGGCGTCAGCAATGGGCTGGTG 3613
Query 249211 CCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGA 249267
|| | || || || | ||||||| | | | | |||||| |||| | ||
Sbjct 3614 CCGATGCTGCGCGTCTACAACAACACCGCCCGCTACGTGGACCAGGGCGGGAACAAGCGC 3673
Query 249268 AAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGAC 249327
|||| |||| ||||| || | ||| |||||||||||| || || ||||| || |||
Sbjct 3674 CCGGGGGCGTTTGCCATCTACCTCGAACCGTGGCACGCCGACATCTTCGAGTTTCTCGAC 3733
Query 249328 TTGAAAAAGAACAACGGC---AACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTG 249384
|| ||||||| |||| | |||||| | || || ||||||||||||| | ||
Sbjct 3734 CTGCGCAAGAACACCGGCTCGGAGGAGCTC---CGTGCCCGCGACCTCTTCTACGCCATG 3790
Query 249385 TGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCT 249437
||||| | ||| | || ||| |||||| |||| ||||||| ||| ||||
Sbjct 3791 TGGGTGCCGGACCTCTTTATGAAGCGCGTCCAGGCGGACGGCGTCTGGTCGCT 3843
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1072574026034560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |