Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq28390 125 6e-24 seq2574 120 2e-22 seq76387 113 4e-20 seq280 102 6e-17 seq21746 93.3 3e-14 seq322 89.7 4e-13 >seq28390 Length=4902 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| || |||||||| || ||| |||| || Sbjct 516 ACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCCGAAAGGGTGCGGCCGTCCTCG 457 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| |||||||| || | ||||| ||||||||||| | |||||||||||| Sbjct 456 AGCTGTTTACCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGG 397 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | || ||| ||||| | ||| || |||||| Sbjct 396 ATCTTTGCCTTCACATTCTCGATCGTATCAGAGGGCTCGACCTCGAGGGTGATGGTCTTG 337 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||||| || ||||||||||||||||||||||| Sbjct 336 CCCGTGAGGGTCTTCACAAAGATTTGCATGTT 305 >seq2574 Length=80092 Score = 120 bits (132), Expect = 2e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 ||||||| |||||||||||| |||| || |||| || || || || |||||||| | Sbjct 58860 CCTTCTGGATGTTGTAGTCGCTCAGCGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 58919 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 ||| ||||| ||||| || || | |||||||||||| || || ||| || | Sbjct 58920 TCAGTCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCT 58979 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | | |||| | ||||||||| | ||| || ||||||||||| || |||||||| | Sbjct 58980 CGATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGA 59039 Query 45327 AGATTTGCATGTTG 45340 |||| ||||| ||| Sbjct 59040 AGATCTGCATCTTG 59053 >seq76387 Length=1185 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||| |||||||| || || |||| |||| || Sbjct 780 ACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGACCGTCCTCG 839 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| ||||| || | ||||| ||||| || || | |||||||||||| Sbjct 840 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 899 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | | || | ||||||||| | ||| || |||||| Sbjct 900 ATCTTCGCCTTCACATTCTCGATGGTATCGCTGGGCTCCACCTCGAGGGTGATGGTCTTG 959 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || |||||||||||||| |||||| Sbjct 960 CCGGTGAGGGTCTTCACAAAGATCTGCATG 989 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 |||| || |||||||||||| | || |||| |||| || ||||| || || ||||| | Sbjct 571 CCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCGTCCTCGAGTTGCTTGCCAGCGAAGA 630 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 | | ||||| ||||| || || | ||||||||||| || || ||| || | Sbjct 631 TGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCT 690 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | | |||| | ||||||||| | || ||||||||||| || || ||||| || | Sbjct 691 CAATGGTGTCGCTGGGCTCCACCTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTAACGA 750 Query 45327 AGATTTGCAT 45336 |||| ||||| Sbjct 751 AGATCTGCAT 760 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| |||||| || ||||||||||| || ||| |||| || Sbjct 207 ACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGGGTGCGCCCGTCCTCG 266 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| ||||| || || | ||||||||||| Sbjct 267 AGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTTGG 326 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||||||||| | || ||||||||| Sbjct 327 ATCTTCGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCGAGAGTGATCGTCTTG 386 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| || ||||| ||||| Sbjct 387 CCGGTGAGGGTCTTAACGAAGATCTGCAT 415 >seq280 Length=341618 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || ||||||||||| ||||||||| || || |||| ||| Sbjct 104675 ACCAAATGGAGAGTCGATTCCTTCTGAATATTGTAGTCGGACAAAGTACGGCCGTCTTCC 104734 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||||| ||||| || ||||| |||||||| || ||||| | ||| ||||| ||| Sbjct 104735 AACTGTTTACCGGCAAAAATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTATCCTGG 104794 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| | | | |||| ||| ||||||| ||| || || || Sbjct 104795 ATTTTGGCTTTAACATTTTCGATGGTGTCTGACGGCTCAACCTCCAAGGTGATGGTTTTA 104854 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| ||||| Sbjct 104855 CCGGTCAGTGTCTTCACGAAGATCTGCAT 104883 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| ||||| |||||| || |||||||||||| || ||| | || || Sbjct 105587 ACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGGCCATCTTCG 105646 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || |||||||| || || ||||| || || ||||| | ||||||||||||| Sbjct 105647 AGTTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGG 105706 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || || || | | | | |||| ||| ||||||| || || || || Sbjct 105707 ATCTTAGCTTTGACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAACGTGATGGTTTTA 105766 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||||||||| || ||||| Sbjct 105767 CCAGTTAGGGTCTTCACAAATATCTGCAT 105795 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| ||||| |||||| || |||||||||||| || ||| | || || Sbjct 113833 ACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGGCCATCTTCG 113892 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || |||||||| || || ||||| || || ||||| | ||||||||||||| Sbjct 113893 AGTTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGG 113952 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || || || | | | | |||| ||| ||||||| || || || || Sbjct 113953 ATCTTAGCTTTGACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAACGTGATGGTTTTA 114012 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||||||||| || ||||| Sbjct 114013 CCAGTTAGGGTCTTCACAAATATCTGCAT 114041 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || |||||| || ||||||||||| || ||| |||| || Sbjct 105359 ACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAGGTGCGCCCGTCTTCG 105418 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || ||||| || || ||||| ||||| | ||| |||||||| | Sbjct 105419 AGCTGCTTACCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGA 105478 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| ||| ||||||| ||| || || ||| Sbjct 105479 ATCTTGGCCTTGACGTTTTCAATGGTGTCGGATGGCTCAACCTCCAAGGTTATAGTTTTG 105538 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||||||||| Sbjct 105539 CCAGTCAGGGTCTTCACGAAGATTTGCAT 105567 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || |||||| || ||||||||||| || ||| |||| ||| Sbjct 105131 ACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAGGTGCGGCCGTCTTCC 105190 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | |||||| |||||||| ||||| || ||||| || ||||| | || || || || | Sbjct 105191 AATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCTTGA 105250 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| ||| ||||||| ||| || || || Sbjct 105251 ATCTTGGCCTTGACGTTTTCGATGGTGTCTGACGGCTCAACCTCCAAGGTGATGGTTTTA 105310 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||||||| ||||||||||| Sbjct 105311 CCAGTTAGGGTCTTCACGAAGATTTGCAT 105339 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCA--GTT-GGCGATCGTCG 45184 ||||| || || || |||||| || ||||| || ||| || || ||| ||| ||| Sbjct 104903 ACCAAATGGAGGGTAGACTCCTTTTGGATGTTATAATCGGACAAAGTACGGCCATCTTCG 104962 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || |||||||| || || |||||||| || || || | ||| || |||||| Sbjct 104963 ---AGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCTTTGTCC 105019 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || || |||||| | | | | |||| ||| ||||||| ||| || || Sbjct 105020 TGGATCTTGGCCTTAACGTTCTCGATGGTGTCTGACGGCTCAACCTCCAAGGTGATGGTT 105079 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| ||||||||||| || || |||||||| Sbjct 105080 TTGCCAGTCAGAGTCTTGACGAAAATTTGCAT 105111 >seq21746 Length=7614 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || |||||| ||||||||||||||| || ||| | || Sbjct 2407 AACACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGACAAAGTACGACCATCT 2348 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||| || |||||||| ||||| || ||||| || || || | ||| || || || Sbjct 2347 TCCAATTGCTTGCCGGCGAAAATCAAACGTTGTTGATCTGGTGGTATACCTTCTTTATCT 2288 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| ||| || | | |||| | ||| ||||||| || || ||| Sbjct 2287 TGGATTTTAGCCTTGACATTTTCGATAGTGTCAGAAGGCTCGACCTCCAAAGTGATGGTC 2228 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||||||| || || || || || || ||||| ||| Sbjct 2227 TTGCCCGTAAGTGTTTTGACGAAAATCTGCATTTTG 2192 >seq322 Length=316913 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGT-TCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||| ||||| ||||| ||| | || | || | || || | ||| ||||| ||||| Sbjct 56238 TCCTTTTGAATATTGTAATCGGCTAAGGTT-CGCCCATCTTCTAATTGCTTTCCTGCGAA 56296 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | |||||||| || ||||| | || |||||||| |||||| |||||| Sbjct 56297 AATTAGGCGCTGTTGATCTGGAGGGATCCCTTCCTTGTCTTGAATTTTCGCCTTAACATG 56356 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | ||| | ||| ||||| | ||||| ||||||||||| || ||||| || Sbjct 56357 CTCAATTGTATCCGAAGGCTCAACCTCAAGAGTAATAGTCTTGCCCGTTAGGGTCTTAAC 56416 Query 45325 AAAGATTTGCATG 45337 || ||||||||| Sbjct 56417 GAAAATTTGCATG 56429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394657885770070