Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq22 161 1e-34 seq59797 95.1 1e-14 >seq22 Length=933496 Score = 161 bits (178), Expect = 1e-34 Identities = 462/702 (66%), Gaps = 14/702 (2%) Strand=Plus/Minus Query 14030 AGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 14089 || || | ||| || | || |||||||| | |||||||| | |||||||| || || Sbjct 329807 AGCAAGCGATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATC 329748 Query 14090 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATA 14149 | || ||||| | || ||||| ||||||| ||| || ||||| || || Sbjct 329747 AAATTCACAGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGCAATG 329688 Query 14150 ATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 14209 || ||||| || || || | | || |||| || || | || ||| Sbjct 329687 ATTTCAATAATACGGTCCCTACTTGGCTTCTGAATGAGGTGTTGGAACATCAGGCAAGCA 329628 Query 14210 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 14269 ||||| ||||| | || || || || ||| || || || || ||||| || || ||| Sbjct 329627 AAATCGCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCAGGC 329568 Query 14270 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 14329 || | || ||||| || | |||||| |||| ||| || || |||||| || || Sbjct 329567 ATTAGGCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATGCCT 329508 Query 14330 TCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATG--CTTTTTTGTTCGATATCC 14387 ||||| || ||||| ||||||| ||||| ||||| | || | ||| | | || |||| Sbjct 329507 TCAACCGCGGCAAATGCTATTATACGTTCGCCAAA-GTTGGCCGATTTCGAT-GAAATCC 329450 Query 14388 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14447 | ||||| |||| || |||| | | ||| || ||||||||||| || | Sbjct 329449 ACGCCAGTGCCCAATCAGCCTTGCGCTTAACAGCAGGCATCGTCTCAATAGCATTGAACA 329390 Query 14448 AATGTTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 14505 | | ||| | | || | ||| ||| ||||||||||| | || ||| |||||||| Sbjct 329389 AGTAATCCCTTTGCTTGCCATCCTT--AATATATGTATCAATTAATATGCTGTACATTTC 329332 Query 14506 AGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTG 14565 ||| || | || ||||| || || ||||| ||||| || || | || |||| ||| Sbjct 329331 AGAATGCACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGATTTG 329272 Query 14566 TACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14625 || ||| | || | ||| | || |||||||| || |||||||| || ||||| Sbjct 329271 AACTTCTTGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGGCAAA 329212 Query 14626 AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATT---GCTGAGTTTTTTCCAATC 14682 |||||||| | || ||| || || || |||||| | |||| |||||| Sbjct 329211 GAATGCCAAAACGTGCGAAATGAA--ATGGC-GTTCATTGTCGGTGAGACGCGCCCAATC 329155 Query 14683 GGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14724 | | ||| || ||||| || || || || || ||||| || Sbjct 329154 ATCCATATCTTTGGAAAGGTCAACCTCTTCCACCGTCCAGAA 329113 >seq59797 Length=1646 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14239 AATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATAT 14298 ||| | ||| || || ||||| || || |||||||| |||| || || | ||| || || Sbjct 1635 AATTAATTCATTAGAGAATGTCAAACCAGGCATCAAACCTCTCTTCTTGAGCCAGAAAAT 1576 Query 14299 TGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTC 14358 | || ||||| || || ||||| || || || || |||||||| |||| || || || Sbjct 1575 GGATGCAAATGAACCAGAGAAGAAAATACCTTCTACGGCAGCAAATGCTACTAGTCTCTC 1516 Query 14359 TCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAAT 14418 ||||| |||||||| | || ||||| || ||||| |||| ||| ||||| Sbjct 1515 ACCAAATGATGCTTTCTCGTCATTGATCCACTTAACTGCCCAGTCAGCTTTGCGCTTAAT 1456 Query 14419 AAAATCCATTGTTTCAATAGCATTAAATAA 14448 | || ||||||||||| || || || Sbjct 1455 GCATGGAATAGTTTCAATAGCGTTGAACAA 1426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481823038835600