Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq22 161 1e-34
seq59797 95.1 1e-14
>seq22
Length=933496
Score = 161 bits (178), Expect = 1e-34
Identities = 462/702 (66%), Gaps = 14/702 (2%)
Strand=Plus/Minus
Query 14030 AGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 14089
|| || | ||| || | || |||||||| | |||||||| | |||||||| || ||
Sbjct 329807 AGCAAGCGATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATC 329748
Query 14090 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATA 14149
| || ||||| | || ||||| ||||||| ||| || ||||| || ||
Sbjct 329747 AAATTCACAGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGCAATG 329688
Query 14150 ATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 14209
|| ||||| || || || | | || |||| || || | || |||
Sbjct 329687 ATTTCAATAATACGGTCCCTACTTGGCTTCTGAATGAGGTGTTGGAACATCAGGCAAGCA 329628
Query 14210 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 14269
||||| ||||| | || || || || ||| || || || || ||||| || || |||
Sbjct 329627 AAATCGCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCAGGC 329568
Query 14270 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 14329
|| | || ||||| || | |||||| |||| ||| || || |||||| || ||
Sbjct 329567 ATTAGGCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATGCCT 329508
Query 14330 TCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATG--CTTTTTTGTTCGATATCC 14387
||||| || ||||| ||||||| ||||| ||||| | || | ||| | | || ||||
Sbjct 329507 TCAACCGCGGCAAATGCTATTATACGTTCGCCAAA-GTTGGCCGATTTCGAT-GAAATCC 329450
Query 14388 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14447
| ||||| |||| || |||| | | ||| || ||||||||||| || |
Sbjct 329449 ACGCCAGTGCCCAATCAGCCTTGCGCTTAACAGCAGGCATCGTCTCAATAGCATTGAACA 329390
Query 14448 AATGTTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 14505
| | ||| | | || | ||| ||| ||||||||||| | || ||| ||||||||
Sbjct 329389 AGTAATCCCTTTGCTTGCCATCCTT--AATATATGTATCAATTAATATGCTGTACATTTC 329332
Query 14506 AGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTG 14565
||| || | || ||||| || || ||||| ||||| || || | || |||| |||
Sbjct 329331 AGAATGCACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGATTTG 329272
Query 14566 TACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14625
|| ||| | || | ||| | || |||||||| || |||||||| || |||||
Sbjct 329271 AACTTCTTGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGGCAAA 329212
Query 14626 AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATT---GCTGAGTTTTTTCCAATC 14682
|||||||| | || ||| || || || |||||| | |||| ||||||
Sbjct 329211 GAATGCCAAAACGTGCGAAATGAA--ATGGC-GTTCATTGTCGGTGAGACGCGCCCAATC 329155
Query 14683 GGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14724
| | ||| || ||||| || || || || || ||||| ||
Sbjct 329154 ATCCATATCTTTGGAAAGGTCAACCTCTTCCACCGTCCAGAA 329113
>seq59797
Length=1646
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 14239 AATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATAT 14298
||| | ||| || || ||||| || || |||||||| |||| || || | ||| || ||
Sbjct 1635 AATTAATTCATTAGAGAATGTCAAACCAGGCATCAAACCTCTCTTCTTGAGCCAGAAAAT 1576
Query 14299 TGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTC 14358
| || ||||| || || ||||| || || || || |||||||| |||| || || ||
Sbjct 1575 GGATGCAAATGAACCAGAGAAGAAAATACCTTCTACGGCAGCAAATGCTACTAGTCTCTC 1516
Query 14359 TCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAAT 14418
||||| |||||||| | || ||||| || ||||| |||| ||| |||||
Sbjct 1515 ACCAAATGATGCTTTCTCGTCATTGATCCACTTAACTGCCCAGTCAGCTTTGCGCTTAAT 1456
Query 14419 AAAATCCATTGTTTCAATAGCATTAAATAA 14448
| || ||||||||||| || || ||
Sbjct 1455 GCATGGAATAGTTTCAATAGCGTTGAACAA 1426
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 481823038835600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |