Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq21746 116 3e-21
seq280 84.2 2e-11
>seq21746
Length=7614
Score = 116 bits (128), Expect = 3e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176
|||| ||| || ||||| || ||||||||||||||||||| || || || |||||||
Sbjct 2404 ACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGACAAAGTACGACCATCTTCC 2345
Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236
||||| ||||| || | || | | ||||||||| || | ||||| |||||
Sbjct 2344 AATTGCTTGCCGGCGAAAATCAAACGTTGTTGATCTGGTGGTATACCTTCTTTATCTTGG 2285
Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296
|||| |||||| | | | | ||||||| |||||| || | |||||| | |||
Sbjct 2284 ATTTTAGCCTTGACATTTTCGATAGTGTCAGAAGGCTCGACCTCCAAAGTGATGGTCTTG 2225
Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
|| || | |||||| || ||||| ||||||||
Sbjct 2224 CCCGTAAGTGTTTTGACGAAAATCTGCATTTT 2193
>seq280
Length=341618
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
||||| || || | ||| |||| || || || ||||| || ||||| |||||||||| |
Sbjct 104657 CCTCCGCGAAGACGAAGCACCAAATGGAGAGTCGATTCCTTCTGAATATTGTAGTCGGAC 104716
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | |||||||| ||||| || ||| | || | | |||||||| ||
Sbjct 104717 AAAGTACGGCCGTCTTCCAACTGTTTACCGGCAAAAATCAAACGCTGTTGATCTGGAGGA 104776
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| ||||||||||| |||| | || || || | | | | ||||| |||||
Sbjct 104777 ATACCTTCCTTATCCTGGATTT-TGGCTTTAACATTTTCGATGGTGTCTGACGGCTCAAC 104835
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | ||||||| |||| ||||||| ||| || || || || |||||
Sbjct 104836 CTCCAAGGTGATGGTTTTACCGGTCAGTGTCTTCACGAAGATCTGCAT 104883
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 378943302489150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |