Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq22 145 2e-29 seq81517 129 1e-24 seq59797 98.7 2e-15 >seq22 Length=933496 Score = 145 bits (160), Expect = 2e-29 Identities = 232/331 (70%), Gaps = 4/331 (1%) Strand=Plus/Plus Query 101902 TTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATT 101961 ||||||| ||| || | || ||||| || |||||||| || ||||||||||| || Sbjct 329473 TTTGGCG-AACGTATAATAGCATTTGCCGCGGTTGAAGGCATTTTCTTTAGTGGCAGTTT 329531 Query 101962 CGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 || || || || ||| | ||||| |||| | |||||||| | || | ||| ||||| Sbjct 329532 TGCTTCAATCTTTTGGCTGAAGAAACGGGGCCTAATGCCTGGTTTGACATTCTCTAATGA 329591 Query 102022 GTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGG 102081 | | ||||| ||||||||||| | ||| |||| ||||| ||| || |||| || | Sbjct 329592 GCTAATTTCAAGGGACGAAGGATTACATTGCGATTTTGCTTGCCTGATGTTCCAACA--- 329648 Query 102082 TTTTGTTGATACCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAAT 102141 | || | | ||| || || | ||| ||||||| | ||||||| || ||| Sbjct 329649 CCTCATTCAGAAGCCAAGTAGGGACCGTATTATTGAAATCATTGCTGAAGCTGTTAAAAT 329708 Query 102142 TGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTT 102201 |||||||||||| | || | | || | ||||| || || | || ||||| ||| | | Sbjct 329709 TGAACAAGAATTCTTAACTGATGCCTTACCTGTGAATTTGATTGGCATGAATTGCCAACT 329768 Query 102202 GATGAGCCAGTACATTGAATTTGTGGCAGAT 102232 ||| | || |||||||||||||||||| Sbjct 329769 AATGTCTGATTATATTGAATTTGTGGCAGAT 329799 >seq81517 Length=1088 Score = 129 bits (142), Expect = 1e-24 Identities = 323/485 (67%), Gaps = 8/485 (2%) Strand=Plus/Minus Query 35319 AGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGT 35378 |||| || || ||||| ||| ||| ||| | | || || |||||||| | | || | Sbjct 961 AGAAAAATATCCACATTTGGGACGGGAATAGTACTCGAGAGTTTTTGGATAAATGTGGTT 902 Query 35379 TATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTG 35438 | | || | | ||| || |||||||| ||||| || ||||| || ||||| ||||||| Sbjct 901 TTCATAATCGCGAAGAAGGTGATTTGGGCCCCGTGTATGGATTTCAGTGGCGCCATTTTG 842 Query 35439 GTGCTGAATATGATACCTGTTCTTCCGATTAT-ACT--GGAAAGGGTATTGATCAATTGG 35495 | || ||||| || || |||| || ||| || | || | |||||| | Sbjct 841 GAGCCAAATATCGAACATGCAA---CGATAATTACTCGGGTGAAGGCGTAGATCAACTTC 785 Query 35496 CCAATATACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCAT 35555 ||| || | | || | || | || || ||||| | | || || ||| | || | Sbjct 784 AAAATGTAATTGATACAATCCGAAACAAACCGAATGATCGTCGCATAATAATGTCTGCGT 725 Query 35556 GGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACT-GCTCAATTT 35614 ||||||| | || ||| | ||||| || ||||| || || || || || |||||| Sbjct 724 GGAATCCCCTTGACATTCCGCAAATGGCACTACCTCCTTGTCAT-TGTCTAGCACAATTT 666 Query 35615 TATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTG 35674 | || || ||||| || |||| || ||||||||||| || |||| || | || ||| Sbjct 665 TTCGTTGCAAATGGTGAGCTGTCTTGTCAGTTGTATCAACGTAGCGCTGACATGGGATTG 606 Query 35675 GGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTG 35734 |||||||| |||||||| || || || || | | || || |||| || || Sbjct 605 GGCGTGCCATTCAATATCGCCTCTTATGCTTTGTTAACATATATGATTGCACACGTGACC 546 Query 35735 GGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTATAATACCCAC 35794 || || || ||||| || | | |||||||||||| || || | ||||| | || Sbjct 545 GGACTTCGTCCCGGAGAATTCGTGCACACTCTTGGTGATGCCCATGTCTATAACAATCAT 486 Query 35795 ATTGA 35799 ||||| Sbjct 485 ATTGA 481 >seq59797 Length=1646 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || || |||||||| || ||||| || ||||| |||| |||| ||||||||||||||| Sbjct 1525 GTAGCATTTGCTGCCGTAGAAGGTATTTTCTTCTCTGGTTCATTTGCATCCATTTTCTGG 1584 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| || ||| | |||||||| | || | ||| ||||| || ||||| | ||| Sbjct 1585 CTCAAGAAGAGAGGTTTGATGCCTGGTTTGACATTCTCTAATGAATTAATTTCACGTGAC 1644 Query 102038 GA 102039 || Sbjct 1645 GA 1646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988485107169850