Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq22 145 2e-29
seq81517 129 1e-24
seq59797 98.7 2e-15
>seq22
Length=933496
Score = 145 bits (160), Expect = 2e-29
Identities = 232/331 (70%), Gaps = 4/331 (1%)
Strand=Plus/Plus
Query 101902 TTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATT 101961
||||||| ||| || | || ||||| || |||||||| || ||||||||||| ||
Sbjct 329473 TTTGGCG-AACGTATAATAGCATTTGCCGCGGTTGAAGGCATTTTCTTTAGTGGCAGTTT 329531
Query 101962 CGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021
|| || || || ||| | ||||| |||| | |||||||| | || | ||| |||||
Sbjct 329532 TGCTTCAATCTTTTGGCTGAAGAAACGGGGCCTAATGCCTGGTTTGACATTCTCTAATGA 329591
Query 102022 GTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGG 102081
| | ||||| ||||||||||| | ||| |||| ||||| ||| || |||| || |
Sbjct 329592 GCTAATTTCAAGGGACGAAGGATTACATTGCGATTTTGCTTGCCTGATGTTCCAACA--- 329648
Query 102082 TTTTGTTGATACCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAAT 102141
| || | | ||| || || | ||| ||||||| | ||||||| || |||
Sbjct 329649 CCTCATTCAGAAGCCAAGTAGGGACCGTATTATTGAAATCATTGCTGAAGCTGTTAAAAT 329708
Query 102142 TGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTT 102201
|||||||||||| | || | | || | ||||| || || | || ||||| ||| | |
Sbjct 329709 TGAACAAGAATTCTTAACTGATGCCTTACCTGTGAATTTGATTGGCATGAATTGCCAACT 329768
Query 102202 GATGAGCCAGTACATTGAATTTGTGGCAGAT 102232
||| | || ||||||||||||||||||
Sbjct 329769 AATGTCTGATTATATTGAATTTGTGGCAGAT 329799
>seq81517
Length=1088
Score = 129 bits (142), Expect = 1e-24
Identities = 323/485 (67%), Gaps = 8/485 (2%)
Strand=Plus/Minus
Query 35319 AGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGT 35378
|||| || || ||||| ||| ||| ||| | | || || |||||||| | | || |
Sbjct 961 AGAAAAATATCCACATTTGGGACGGGAATAGTACTCGAGAGTTTTTGGATAAATGTGGTT 902
Query 35379 TATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTG 35438
| | || | | ||| || |||||||| ||||| || ||||| || ||||| |||||||
Sbjct 901 TTCATAATCGCGAAGAAGGTGATTTGGGCCCCGTGTATGGATTTCAGTGGCGCCATTTTG 842
Query 35439 GTGCTGAATATGATACCTGTTCTTCCGATTAT-ACT--GGAAAGGGTATTGATCAATTGG 35495
| || ||||| || || |||| || ||| || | || | |||||| |
Sbjct 841 GAGCCAAATATCGAACATGCAA---CGATAATTACTCGGGTGAAGGCGTAGATCAACTTC 785
Query 35496 CCAATATACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCAT 35555
||| || | | || | || | || || ||||| | | || || ||| | || |
Sbjct 784 AAAATGTAATTGATACAATCCGAAACAAACCGAATGATCGTCGCATAATAATGTCTGCGT 725
Query 35556 GGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACT-GCTCAATTT 35614
||||||| | || ||| | ||||| || ||||| || || || || || ||||||
Sbjct 724 GGAATCCCCTTGACATTCCGCAAATGGCACTACCTCCTTGTCAT-TGTCTAGCACAATTT 666
Query 35615 TATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTG 35674
| || || ||||| || |||| || ||||||||||| || |||| || | || |||
Sbjct 665 TTCGTTGCAAATGGTGAGCTGTCTTGTCAGTTGTATCAACGTAGCGCTGACATGGGATTG 606
Query 35675 GGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTG 35734
|||||||| |||||||| || || || || | | || || |||| || ||
Sbjct 605 GGCGTGCCATTCAATATCGCCTCTTATGCTTTGTTAACATATATGATTGCACACGTGACC 546
Query 35735 GGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTATAATACCCAC 35794
|| || || ||||| || | | |||||||||||| || || | ||||| | ||
Sbjct 545 GGACTTCGTCCCGGAGAATTCGTGCACACTCTTGGTGATGCCCATGTCTATAACAATCAT 486
Query 35795 ATTGA 35799
|||||
Sbjct 485 ATTGA 481
>seq59797
Length=1646
Score = 98.7 bits (108), Expect = 2e-15
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
|| || |||||||| || ||||| || ||||| |||| |||| |||||||||||||||
Sbjct 1525 GTAGCATTTGCTGCCGTAGAAGGTATTTTCTTCTCTGGTTCATTTGCATCCATTTTCTGG 1584
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
||||||| || ||| | |||||||| | || | ||| ||||| || ||||| | |||
Sbjct 1585 CTCAAGAAGAGAGGTTTGATGCCTGGTTTGACATTCTCTAATGAATTAATTTCACGTGAC 1644
Query 102038 GA 102039
||
Sbjct 1645 GA 1646
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 988485107169850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |