Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_003278.1
Length=35580
Score E
Sequences producing significant alignments: (Bits) Value
seq52999 435 7e-118
>seq52999
Length=1923
Score = 435 bits (482), Expect = 7e-118
Identities = 1082/1604 (67%), Gaps = 74/1604 (5%)
Strand=Plus/Minus
Query 2432 ACTGGCTGCTGGCGGCGGTGGCTGCGACGTTTGCTCATCCGAAAATCTCCATGCGGCCGG 2491
|| |||||| |||| | || | | |||||||||||| | ||||||||| |
Sbjct 1713 ACGGGCTGCGTGCGGGTGCGGTTCCTGCGTTTGCTCATCAGTAAATCTCCA------CAA 1660
Query 2492 TATTC-GCGGGGGT-----CTGCCCCTCGAGCGGCTCGTTTTGCAATGCGTGGAATAGCG 2545
| ||| ||| | || ||| |||| |||||||||||| || ||||| | ||
Sbjct 1659 TGTTCTGCGTGTGTGCCGCCTGTCCCTGCAGCGGCTCGTTTGCCAGCGCGTGCATGGTCG 1600
Query 2546 CCCAGGCCAGATCGGCGTGGCCGGTGTTGTCGTTGCGGCCGGCGGTATAGGT-GAACTGG 2604
||||||| | |||| |||||| | | ||| |||||| || |||||| | || |
Sbjct 1599 CCCAGGCTAAATCGCCGTGGCTGACTTCCTCGCTGCGGCTGGTTTCATAGGTCGGACGGT 1540
Query 2605 CGCCCACCGGCCGTGATGGTCTTGCGGATAGCCATCAGCGCCTGGGCCAGGTCGGTCCAG 2664
||| | ||||||| ||| |||||||||| ||| | | ||| || | |||| |
Sbjct 1539 TGCCG-CTGGCCGTGGTGGCTTTGCGGATAGACATAAATGACTGCGCGATGTCGAGGTGG 1481
Query 2665 CCGGCGTCGAATTCGAGGCGGCCGTTCTTGATCACTGACC-AGGCCTTCATGACCAACTG 2723
| |||||| || || || || ||| | ||| || | | ||||||| |||| |
Sbjct 1480 CTGGCGTCAAACTCCAGCCGCCCGCTGGCGATGG-TGTCGTAAGCCTTCAGCACCAGG-G 1423
Query 2724 CGTCTT-CACCT-CGGGCGAGTAGCTGAAGGTGCGCACCCCCGGGAAGAACTGGCGC--A 2779
||| || ||| | |||| | ||| || |||| ||||||||| ||| |
Sbjct 1422 CGTTTTTCACGTTCGGGTTA-TAGACAAACTCCTTCACCTGCGGGAAGAA--GGCTTTGA 1366
Query 2780 CCAGCTGCGCGACGCCAGAGCCC-ATGCCGGTGGTGTCGACGCCGATGTAGGTGACCCAG 2838
| || |||||| ||||| | |||||||| ||||| |||||| ||||||||
Sbjct 1365 CATTCTCGTATACGCCA-AGCCCGACGCCGGTGGAGTCGATGCCGATATAGGTGACGTTA 1307
Query 2839 TAGCGCTGGGTCACCTTGCGGATGAACTCGGCCTGTTCGGCGAAGTCCTTGCCGCGGAAT 2898
|| |||| |||| | | | |||| || ||||| | ||||||| | ||||| |
Sbjct 1306 TACTGCTGCGTCAGCGTCCTGATGGCGTCAGCCTGCGCCCGGAAGTCCATCCCGCGCCAC 1247
Query 2899 TGATGGCGCTCCAGCACGCGGAACTTGCCGCCCGGTACCGCCGGAGGCGCCACCACCACC 2958
|| || ||||| || | |||||||||||||||||| || || || || |||| |||||
Sbjct 1246 TGGTGACGCTCAAGGATGCGGAACTTGCCGCCCGGCACGGCAGGCGGTGCCATGACCACG 1187
Query 2959 AGACCCGCGGTGTCGCCCGTCT-CG--------GCGGGGTCATAGCCCAGCCACACCTGG 3009
|| ||| ||||||| ||| || |||||||| ||||| | |||||| |
Sbjct 1186 CATCCGGCGCTGTCGCCGTTCTGCGTTCCCTTCGCGGGGTCGTAGCCGATCCACACTT-- 1129
Query 3010 CGATCA--CCGAACGGCCGCAGCGCGAACGGCTTGTAGTCCTCCGACCACAGGTCCCAGC 3067
| || |||||||| |||||||| | || || |||| | ||| | |||||||
Sbjct 1128 CTTTCCAGCCGAACGGGCGCAGCGCCAGCGCCTCAAAGTCG---GTCCAGACTTCCCAGC 1072
Query 3068 TATCGACCATGCACGGCTGCAGCATGGTCAACGGGAAAATGCTCGCGCCGTCGTCGACGA 3127
| || |||||||| ||||||||||| || | |||| | ||| ||||| | |
Sbjct 1071 TGTCCACCATGCATTTCTGCAGCATGGCCAGCTGGAATACCGACGCCAGATCGTCCATAA 1012
Query 3128 ACTGGCACATCAGCAGGTTCTGGAAAGCCTCGGCGTCGTA-CTCGAGACGCAGCTCGTCG 3186
| ||||||||||||||||||| || |||| | | ||| | || | ||||||| ||
Sbjct 1011 AGACGCACATCAGCAGGTTCTGGTAATCCTCCGGGCTGTAGCGCGTG-CGCAGCTGCTCC 953
Query 3187 ATGTCGAACAGATCGCAGCCACGGGCCTCGGCATCGAGGATGGTGACGATCTGGCGCCAG 3246
| ||| ||||| || ||||| | | | | ||||| | ||||||||||||||| |
Sbjct 952 AGGTCAAACAGGTCACAGCCGCCGCGCACCGCATCTTCAACGGTGACGATCTGGCGAAAC 893
Query 3247 ATGCGGTCCTCGCACAGTCGCCCTTGCTGC-AGGGCGTCATGACTTACGTCGATCTTGAT 3305
|| ||| ||||| || || || || || || | | ||| || | ||| || | |
Sbjct 892 TGGCCGTCTTCGCAGAGGCGACCG-GCGGCCAGTGACTGATGGCTGAGGTCAATATCAAC 834
Query 3306 GCGATCGGC---GGCCGGCTTGCCCTTGTTGAAGCGCTCGCCAGTCCAGAATGTGTAGGC 3362
|| || || |||| | |||||||||||| || || | |||||| | |||||
Sbjct 833 CCGGTCAGCTTTGGCCCG---GCCCTTGTTGAACTGCGAACCGGACCAGAACGGATAGGC 777
Query 3363 CTCATGCGCCATC--GAACTGGGCGTCGAGAAGTAGGTCCGGCGGTAGCGCTTCTGCATC 3420
|||| | | || ||| | || |||||||| ||| | ||| |||| |
Sbjct 776 GCTGTGCGTGAGGCTGGACGGGGTG--GAAAAGTAGGTTTCGCGCCACTTCTTGTGCAGC 719
Query 3421 GCCATACCGCTGGCGACCTTGTTCAGCTCCTTGAACTTGAACGTCCAGAAGAACTCGTCG 3480
||||| ||| || || || | ||| |||| ||||| ||||||| | || ||
Sbjct 718 GCCATGCCGGACGCCACTTTCTGCAGTTCCTGAAACTTCGGGATCCAGAAATATTCATCC 659
Query 3481 AAGTAGAAGTTGCCGTGGTAGCCCTGGGCAGTCCGCGCGTTGGTGCCGAGGAAGTGCAAT 3540
| ||| | |||||||| |||| ||| || || || ||||||||||| ||||| | ||
Sbjct 658 AGGTACAGATTGCCGTGATAGCTCTGCGCGGTGCGGGCGTTGGTGCCCAGGAAATACAGG 599
Query 3541 TCCGCGCCGTTCGGCAGGATGATCGGGTCGCCCTTCAGTTCGACACCTACCGCATCGCGC 3600
||| ||||| || | ||||||||||||||||| || || | ||| |||||
Sbjct 598 CACGCACCGTTACTGAGCGTCATCGGGTCGCCCTTCAGGTCTACGTCCACC---TCGCGG 542
Query 3601 GCGAAGGCCTGGATATACGCCTTGAAGATGTGCGCTTGGGCCTTGCTGGCCGACAGGAAT 3660
|| || | ||| ||| |||||||| |||||| || ||||| ||||| || ||||||
Sbjct 541 GCAAATTCAATGATGTACTGCTTGAAGACGTGCGCCTGCGCCTTACTGGCTGAAAGGAAT 482
Query 3661 ATCTGGTTGCGCCCCGTTTCCAGCGCGTCGATCAGCGCCTCGCGGGCGAAGTAGAACGTG 3720
||||| |||||||| || |||||| |||||||||||||||||||| || |||| |||
Sbjct 481 ATCTGATTGCGCCCGGTGGTCAGCGCATCGATCAGCGCCTCGCGGGCAAAAAAGAAGGTG 422
Query 3721 GCGCCGATCTGCCGCGACTTGAGAATCACGCG---GGTTCGCTGATTACCCGCGCGGTAC 3777
|| || ||||| |||||||| || | ||| || || ||| || || ||
Sbjct 421 GCCCCAATCTGGCGCGACTTCAGCAGGTTGCGGACGGAGTACTTATTCCCGGCCTCCCAC 362
Query 3778 CAGTCTTTCTGGTAGTCGAAGCAAC-CGTCGAGGAAGGCCTCGACCAGTTTCTCGGTCAG 3836
|| | ||||||| |||| || | | || |||| |||| ||| ||||| || |
Sbjct 361 CACTGGCGCTGGTAGCCGAA-CATCGAGCCGTGGAAAACCTCCTGCAGCTTCTCAATCTG 303
Query 3837 TTCCTCACTGATGTCGTTGCGCTTC----GGCTTGCGCTTGGGACCTTCGTTACGCTTGG 3892
||| || |||| ||| | ||| ||||| ||| ||| |||| ||| || ||
Sbjct 302 TTCGTCGCTGAACAGGTT-CTTTTCCGGGGGCTTACGC--GGGCCCTT-GTTGCGGTTCT 247
Query 3893 CAAGCTCGGGGTTCAGGTCGGTTTCCGTACCACC-GCCCTGGTAGCGCTGGATCCGCGCC 3951
| | | || |||||||| | ||| | || || ||| || |||||| ||
Sbjct 246 CCACGTTCGGATTCAGGTCCGCTTCATTGCCGCCATTGCTGAATTTGC-CGATCCGGGCA 188
Query 3952 TGGCGCTCAAGCTGCCGATGCAGCAGGTCGATTTCCTTGTAGTC 3995
|||||||| |||||| ||||||||||||||||||| ||||
Sbjct 187 TGGCGCTCGGACTGCCGCGCCAGCAGGTCGATTTCCTTGAAGTC 144
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 113617343844680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |