Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq52999 435 7e-118 >seq52999 Length=1923 Score = 435 bits (482), Expect = 7e-118 Identities = 1082/1604 (67%), Gaps = 74/1604 (5%) Strand=Plus/Minus Query 2432 ACTGGCTGCTGGCGGCGGTGGCTGCGACGTTTGCTCATCCGAAAATCTCCATGCGGCCGG 2491 || |||||| |||| | || | | |||||||||||| | ||||||||| | Sbjct 1713 ACGGGCTGCGTGCGGGTGCGGTTCCTGCGTTTGCTCATCAGTAAATCTCCA------CAA 1660 Query 2492 TATTC-GCGGGGGT-----CTGCCCCTCGAGCGGCTCGTTTTGCAATGCGTGGAATAGCG 2545 | ||| ||| | || ||| |||| |||||||||||| || ||||| | || Sbjct 1659 TGTTCTGCGTGTGTGCCGCCTGTCCCTGCAGCGGCTCGTTTGCCAGCGCGTGCATGGTCG 1600 Query 2546 CCCAGGCCAGATCGGCGTGGCCGGTGTTGTCGTTGCGGCCGGCGGTATAGGT-GAACTGG 2604 ||||||| | |||| |||||| | | ||| |||||| || |||||| | || | Sbjct 1599 CCCAGGCTAAATCGCCGTGGCTGACTTCCTCGCTGCGGCTGGTTTCATAGGTCGGACGGT 1540 Query 2605 CGCCCACCGGCCGTGATGGTCTTGCGGATAGCCATCAGCGCCTGGGCCAGGTCGGTCCAG 2664 ||| | ||||||| ||| |||||||||| ||| | | ||| || | |||| | Sbjct 1539 TGCCG-CTGGCCGTGGTGGCTTTGCGGATAGACATAAATGACTGCGCGATGTCGAGGTGG 1481 Query 2665 CCGGCGTCGAATTCGAGGCGGCCGTTCTTGATCACTGACC-AGGCCTTCATGACCAACTG 2723 | |||||| || || || || ||| | ||| || | | ||||||| |||| | Sbjct 1480 CTGGCGTCAAACTCCAGCCGCCCGCTGGCGATGG-TGTCGTAAGCCTTCAGCACCAGG-G 1423 Query 2724 CGTCTT-CACCT-CGGGCGAGTAGCTGAAGGTGCGCACCCCCGGGAAGAACTGGCGC--A 2779 ||| || ||| | |||| | ||| || |||| ||||||||| ||| | Sbjct 1422 CGTTTTTCACGTTCGGGTTA-TAGACAAACTCCTTCACCTGCGGGAAGAA--GGCTTTGA 1366 Query 2780 CCAGCTGCGCGACGCCAGAGCCC-ATGCCGGTGGTGTCGACGCCGATGTAGGTGACCCAG 2838 | || |||||| ||||| | |||||||| ||||| |||||| |||||||| Sbjct 1365 CATTCTCGTATACGCCA-AGCCCGACGCCGGTGGAGTCGATGCCGATATAGGTGACGTTA 1307 Query 2839 TAGCGCTGGGTCACCTTGCGGATGAACTCGGCCTGTTCGGCGAAGTCCTTGCCGCGGAAT 2898 || |||| |||| | | | |||| || ||||| | ||||||| | ||||| | Sbjct 1306 TACTGCTGCGTCAGCGTCCTGATGGCGTCAGCCTGCGCCCGGAAGTCCATCCCGCGCCAC 1247 Query 2899 TGATGGCGCTCCAGCACGCGGAACTTGCCGCCCGGTACCGCCGGAGGCGCCACCACCACC 2958 || || ||||| || | |||||||||||||||||| || || || || |||| ||||| Sbjct 1246 TGGTGACGCTCAAGGATGCGGAACTTGCCGCCCGGCACGGCAGGCGGTGCCATGACCACG 1187 Query 2959 AGACCCGCGGTGTCGCCCGTCT-CG--------GCGGGGTCATAGCCCAGCCACACCTGG 3009 || ||| ||||||| ||| || |||||||| ||||| | |||||| | Sbjct 1186 CATCCGGCGCTGTCGCCGTTCTGCGTTCCCTTCGCGGGGTCGTAGCCGATCCACACTT-- 1129 Query 3010 CGATCA--CCGAACGGCCGCAGCGCGAACGGCTTGTAGTCCTCCGACCACAGGTCCCAGC 3067 | || |||||||| |||||||| | || || |||| | ||| | ||||||| Sbjct 1128 CTTTCCAGCCGAACGGGCGCAGCGCCAGCGCCTCAAAGTCG---GTCCAGACTTCCCAGC 1072 Query 3068 TATCGACCATGCACGGCTGCAGCATGGTCAACGGGAAAATGCTCGCGCCGTCGTCGACGA 3127 | || |||||||| ||||||||||| || | |||| | ||| ||||| | | Sbjct 1071 TGTCCACCATGCATTTCTGCAGCATGGCCAGCTGGAATACCGACGCCAGATCGTCCATAA 1012 Query 3128 ACTGGCACATCAGCAGGTTCTGGAAAGCCTCGGCGTCGTA-CTCGAGACGCAGCTCGTCG 3186 | ||||||||||||||||||| || |||| | | ||| | || | ||||||| || Sbjct 1011 AGACGCACATCAGCAGGTTCTGGTAATCCTCCGGGCTGTAGCGCGTG-CGCAGCTGCTCC 953 Query 3187 ATGTCGAACAGATCGCAGCCACGGGCCTCGGCATCGAGGATGGTGACGATCTGGCGCCAG 3246 | ||| ||||| || ||||| | | | | ||||| | ||||||||||||||| | Sbjct 952 AGGTCAAACAGGTCACAGCCGCCGCGCACCGCATCTTCAACGGTGACGATCTGGCGAAAC 893 Query 3247 ATGCGGTCCTCGCACAGTCGCCCTTGCTGC-AGGGCGTCATGACTTACGTCGATCTTGAT 3305 || ||| ||||| || || || || || || | | ||| || | ||| || | | Sbjct 892 TGGCCGTCTTCGCAGAGGCGACCG-GCGGCCAGTGACTGATGGCTGAGGTCAATATCAAC 834 Query 3306 GCGATCGGC---GGCCGGCTTGCCCTTGTTGAAGCGCTCGCCAGTCCAGAATGTGTAGGC 3362 || || || |||| | |||||||||||| || || | |||||| | ||||| Sbjct 833 CCGGTCAGCTTTGGCCCG---GCCCTTGTTGAACTGCGAACCGGACCAGAACGGATAGGC 777 Query 3363 CTCATGCGCCATC--GAACTGGGCGTCGAGAAGTAGGTCCGGCGGTAGCGCTTCTGCATC 3420 |||| | | || ||| | || |||||||| ||| | ||| |||| | Sbjct 776 GCTGTGCGTGAGGCTGGACGGGGTG--GAAAAGTAGGTTTCGCGCCACTTCTTGTGCAGC 719 Query 3421 GCCATACCGCTGGCGACCTTGTTCAGCTCCTTGAACTTGAACGTCCAGAAGAACTCGTCG 3480 ||||| ||| || || || | ||| |||| ||||| ||||||| | || || Sbjct 718 GCCATGCCGGACGCCACTTTCTGCAGTTCCTGAAACTTCGGGATCCAGAAATATTCATCC 659 Query 3481 AAGTAGAAGTTGCCGTGGTAGCCCTGGGCAGTCCGCGCGTTGGTGCCGAGGAAGTGCAAT 3540 | ||| | |||||||| |||| ||| || || || ||||||||||| ||||| | || Sbjct 658 AGGTACAGATTGCCGTGATAGCTCTGCGCGGTGCGGGCGTTGGTGCCCAGGAAATACAGG 599 Query 3541 TCCGCGCCGTTCGGCAGGATGATCGGGTCGCCCTTCAGTTCGACACCTACCGCATCGCGC 3600 ||| ||||| || | ||||||||||||||||| || || | ||| ||||| Sbjct 598 CACGCACCGTTACTGAGCGTCATCGGGTCGCCCTTCAGGTCTACGTCCACC---TCGCGG 542 Query 3601 GCGAAGGCCTGGATATACGCCTTGAAGATGTGCGCTTGGGCCTTGCTGGCCGACAGGAAT 3660 || || | ||| ||| |||||||| |||||| || ||||| ||||| || |||||| Sbjct 541 GCAAATTCAATGATGTACTGCTTGAAGACGTGCGCCTGCGCCTTACTGGCTGAAAGGAAT 482 Query 3661 ATCTGGTTGCGCCCCGTTTCCAGCGCGTCGATCAGCGCCTCGCGGGCGAAGTAGAACGTG 3720 ||||| |||||||| || |||||| |||||||||||||||||||| || |||| ||| Sbjct 481 ATCTGATTGCGCCCGGTGGTCAGCGCATCGATCAGCGCCTCGCGGGCAAAAAAGAAGGTG 422 Query 3721 GCGCCGATCTGCCGCGACTTGAGAATCACGCG---GGTTCGCTGATTACCCGCGCGGTAC 3777 || || ||||| |||||||| || | ||| || || ||| || || || Sbjct 421 GCCCCAATCTGGCGCGACTTCAGCAGGTTGCGGACGGAGTACTTATTCCCGGCCTCCCAC 362 Query 3778 CAGTCTTTCTGGTAGTCGAAGCAAC-CGTCGAGGAAGGCCTCGACCAGTTTCTCGGTCAG 3836 || | ||||||| |||| || | | || |||| |||| ||| ||||| || | Sbjct 361 CACTGGCGCTGGTAGCCGAA-CATCGAGCCGTGGAAAACCTCCTGCAGCTTCTCAATCTG 303 Query 3837 TTCCTCACTGATGTCGTTGCGCTTC----GGCTTGCGCTTGGGACCTTCGTTACGCTTGG 3892 ||| || |||| ||| | ||| ||||| ||| ||| |||| ||| || || Sbjct 302 TTCGTCGCTGAACAGGTT-CTTTTCCGGGGGCTTACGC--GGGCCCTT-GTTGCGGTTCT 247 Query 3893 CAAGCTCGGGGTTCAGGTCGGTTTCCGTACCACC-GCCCTGGTAGCGCTGGATCCGCGCC 3951 | | | || |||||||| | ||| | || || ||| || |||||| || Sbjct 246 CCACGTTCGGATTCAGGTCCGCTTCATTGCCGCCATTGCTGAATTTGC-CGATCCGGGCA 188 Query 3952 TGGCGCTCAAGCTGCCGATGCAGCAGGTCGATTTCCTTGTAGTC 3995 |||||||| |||||| ||||||||||||||||||| |||| Sbjct 187 TGGCGCTCGGACTGCCGCGCCAGCAGGTCGATTTCCTTGAAGTC 144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113617343844680