Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq13731 569 3e-157
seq22 232 8e-56
seq32170 84.2 3e-11
>seq13731
Length=15303
Score = 569 bits (630), Expect = 3e-157
Identities = 1271/1883 (67%), Gaps = 34/1883 (2%)
Strand=Plus/Plus
Query 62036 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62095
|||||||| || ||||| || | | | || ||||| ||||||| |||||||||||
Sbjct 559 CTTGTCCACAGTAAATTGTATAGCATTTGCAGCAGGTTTGGTACGTAAGTAGTACATTCC 618
Query 62096 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62155
||||||||||| |||| || || ||||| ||| ||||||||| ||| | ||
Sbjct 619 TGTTTTTAGACCCGCTTTCCAGCCATAGAAATGTATAGAAGTTAGTTTGCCATAGTTTGG 678
Query 62156 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62215
||||| | ||| || || | ||||| ||||| |||||||| ||||||| ||||| ||
Sbjct 679 CTCTGCGACATGTATGTTAAACGATTGGCTTTGGTCGATGAATGCTCCCCGATCTGCTGC 738
Query 62216 CATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 62274
|||||| || || || | |||||||| | |||||| || | |||| ||| |
Sbjct 739 CATTTTAATTGAAGTTTTAACCGAGATTTCCCATACAGTTTTGTACAGATCGCG-AATGT 797
Query 62275 -CTTCTGGAAGGTTTGTATTC--TGAATGGATCCACCATCTACCA-TAATCCTATTCTTG 62330
|| | | | || || ||| | || ||||| |||| ||| | |||| |||| ||
Sbjct 798 GCTGCGGTATGGATTCTATGCCTTGTATGGAGCCACGG-CTAGTAATAATTTTATTTTTC 856
Query 62331 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACT 62390
|| ||||||| ||| || ||| || | | | | || | ||| | || || |||
Sbjct 857 ATGTCATCATCCCACAAACCCAACTCAGTGAGATCGCGCAGCAAATGATGATTTACAACT 916
Query 62391 TGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62450
|| ||||| ||||| | ||| | || ||||| || ||| || || ||||| | |||
Sbjct 917 TGAAATTCGCCAGAGAGTACGCGACGTGTGTAGATGTTAGAAGTGTAGGGTTCGAATGAC 976
Query 62451 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62510
|||||||| |||| ||||| |||||||| || || ||||||||||| | || | |
Sbjct 977 TCATTATTGCCCATGATTTGCGCAGTTGAAGCGGTGGGCATAGGTGCAAGCAGGAGGGAA 1036
Query 62511 TTTCTAAGACCGTA-TGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGA 62569
|| |||| ||| | |||| | ||||| || || | | | ||| ||||| || || |
Sbjct 1037 TTCCTAACACCATGCTGTT-TAATTTTCTCCTTCAATTCTGTCCAGTTCCAGAGCTCAGT 1095
Query 62570 CGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACAT 62628
|| | |||||||||||| || || || | | || | ||| |||
Sbjct 1096 GGGCTTCTTATCCCACATGTCATATTGTAGAATTCCCTTGCTAACTGGAC-AGCCTTCAT 1154
Query 62629 ATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAAT 62688
| || ||||| | || | |||||||| | || |||||| || ||||||||||| ||||
Sbjct 1155 AAGTTTCATAGGTACCGTATTTCTCAGCCAATTCACAACTAGCTTCTAATGCACCATAAT 1214
Query 62689 AAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAAT 62748
|||||||||| || | || | ||||| | ||||| ||| || | |||||
Sbjct 1215 AAATGGTTTCGAAAACCTGTTGATTTAAAAGGAATGCTTGTTCGCTTTCGTACGGATAGC 1274
Query 62749 TTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 62808
| || |||| ||||| || || ||||| || || || ||||| || | |||||
Sbjct 1275 GCATAAGTATAAGAGCGTCTGCAAAACCTTGTACGCCGATCCCGATTGGACGGTGTCTAA 1334
Query 62809 TATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 62868
|| || ||| || || || | || || | ||| || || || |||||||| | ||
Sbjct 1335 AGTTTGATTTTTTTGCCTCGGGCAATGGGTAGTGATTTATTTCAATGATTTTATTCAAAT 1394
Query 62869 TTC-TGACA-ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATC 62923
||| || || | | |||| || ||||| || | ||||| | | ||
Sbjct 1395 TTCGTGTCACAGT--TTTGGTGACTTCCTTGAGCCGTTGGAAATCGTAAGTTTTTTCAGG 1452
Query 62924 TATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATC 62983
| | |||||||||||||| || | ||||| | || || || || ||||||| || |
Sbjct 1453 TGTGACAAACATGTTCAAAGCGATTGATGCTAAGTTGCATACAGCCACCTCATCAGGTGC 1512
Query 62984 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTG 63043
| ||||| | || |||||||| ||||| || || || || || || | |||||| ||
Sbjct 1513 AGAATATTCGACAATTTCAGTGCATAGATTGCTGCATTTAATGGTGCCAATATTTTGCTG 1572
Query 63044 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 63103
|||||| ||| | ||||| |||||||| || | || | || ||||| || || | |||
Sbjct 1573 ATTACTTTTTCTATTACAGGCATCCTTGTACAACATATAAGGTGTACCGGTCTCCACCTG 1632
Query 63104 AGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAG-ATTTGTATCTCCTT 63161
||||| || || || ||| | |||| |||| || | | ||| | |||||
Sbjct 1633 GGATTCAATGATGGCGAACCAAA-GACTTTGAGCTTTCACCGTCTTATTAGCGCGTCCTT 1691
Query 63162 TCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTA 63221
|| |||| || ||||| ||| |||||| || || |||||||| | | || | |
Sbjct 1692 CCT-TTTCATACTTTGTATATAATTTTTCGAATTCTTCGCCCCAAACCTCATGTAAGCCA 1750
Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281
||||||| || ||||||||||| ||||||||||||| | | | ||| |||| ||| ||
Sbjct 1751 GGACATTTATGTGGACACATCAATGACCACTCTCCGTTAGCTTCCACACGTTCCATGAAT 1810
Query 63282 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTA 63341
| ||| || ||||| | ||| ||||| |||||| | || || || || ||||| |||
Sbjct 1811 AAATCTGGTATCCACAAAGCATAAAATAAATCTCTGGCTCGGTGCTCTTCTTTTCCAGTA 1870
Query 63342 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63401
||||| || | ||| | ||| | | |||||| | |||||| ||||||||||| |||||
Sbjct 1871 TTCTTCTTCAAATCCAAAAACTCAAAAATATCTGCATGCCATGGTTCCAAGTAAATGGCA 1930
Query 63402 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63461
| | |||||||| ||| || |||||||||| ||| | || |||||| | ||
Sbjct 1931 AAGGCGCCAGGCCGCTTGCCACCACCCTGATCTACGTAACGTGCAACGTTATTGAATACC 1990
Query 63462 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG 63521
| ||||||||| | | ||| ||||| | ||||| || || | ||| || |
Sbjct 1991 CGCAACATTGGTACCAAACCATTTGAAGTGCCATTTGTGCCCGCGATTGCTGTGCCCTTT 2050
Query 63522 GCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63579
|| || || | | ||| ||| || || || || || || || ||||| || |
Sbjct 2051 GCTCGTATGCAATGGACATT--TAGTCCAATGCCACCAGCAGACTTGGAAATTAAAGCAC 2108
Query 63580 A-TCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63638
| | || | ||| | | || || || ||| |||| | ||| | | ||| |||
Sbjct 2109 ATTGGTGGGCAGATGT-AAATATACCATCAATGGAATCACCAGCCATAGTCAATAGGAAA 2167
Query 63639 CAGCTAGACATTT---GGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 63695
||| |||| || | || ||||| | | ||| ||| | || ||||| || ||
Sbjct 2168 CAGGATGACAATTGCGGTTGGCGAGTGG---CAGCAGCAAAGAGTGTTGGAGAGGCATGT 2224
Query 63696 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGA 63755
|| || | ||| ||||| | || || || |||||||| | || ||||| |
Sbjct 2225 GTGAAATAGCGTTCCGAAAGCAAGTTATAAGTTTCAATAGCGGCATCAATATCTTCACCA 2284
Query 63756 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTT 63815
||||| || | | |||||||||||||||||||| || | ||||||||||||| ||
Sbjct 2285 TGAATACCAATGGAAACACGCATTAACATGTGCTGCGGACGTTCAACAATTTTGCCATTC 2344
Query 63816 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63875
| || | || ||||| || | ||||| ||||||||||| ||||| ||| ||
Sbjct 2345 AACTTGAGTAAATAGGAACGCTCAAGTGTTTTGAAACCAAAATAATTGTAACCAAAATCA 2404
Query 63876 CGTTCGTAAATAATAACCGAATT 63898
|| || || || ||| |||||||
Sbjct 2405 CGGTCATATATTATAGCCGAATT 2427
>seq22
Length=933496
Score = 232 bits (256), Expect = 8e-56
Identities = 484/712 (68%), Gaps = 13/712 (2%)
Strand=Plus/Minus
Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAG 33469
||| | |||||| || ||||| ||||| ||| | || |||||||| || || |
Sbjct 329805 CAAGCGATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATCAA 329746
Query 33470 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAAT 33529
|| || || | || |||| | |||||||||||||| || || | | || ||
Sbjct 329745 ATTCACAGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGCAATGAT 329686
Query 33530 A--AATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCG 33587
||| ||||| || ||| || || | | |||| ||||||| || ||
Sbjct 329685 TTCAATAATACGGTCCCT--ACTTGGCTTCTGAATGAGGTGTTGGAACATCAGGCAAGCA 329628
Query 33588 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGC 33647
|||||||| || | || ||||| || ||||| || ||||| || || | || |||
Sbjct 329627 AAATCGCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCAGGC 329568
Query 33648 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCT 33707
|||||||| || || || |||||||| || ||||| || || |||||| || |||
Sbjct 329567 ATTAGGCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATGCCT 329508
Query 33708 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTC-ATGTA-TCCAC 33764
|| || || ||||| || || | | || ||| | ||| | | || ||| | |||||
Sbjct 329507 TCAACCGCGGCAAATGCTATTATACGTTCGCCAAAGTTGGCCGATTTCGATGAAATCCAC 329448
Query 33765 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33824
| |||||||| ||||| || ||| ||||||||| || || ||||| || |
Sbjct 329447 GCCAGTGCCCAATCAGCCTTGCGCTTAACAGCAGGCATCGTCTCAATAGCATTGAACAAG 329388
Query 33825 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 33884
|| | ||| || | ||| |||| ||| ||||| || || | || |||||||| |||
Sbjct 329387 TAATCCCTTTGCTTGCCATCCTTAATATATGTATCAATTAATATGCTGTACATTTCAGAA 329328
Query 33885 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACT 33944
|| | || || ||||| || |||||||| ||||| || | ||||| || || || |||
Sbjct 329327 TGCACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGATTTGAACT 329268
Query 33945 TCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAAC 34004
||| | || ||||| |||| ||||||||||| || ||||| ||| ||||| ||
Sbjct 329267 TCTTGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGGCAAAGAAT 329208
Query 34005 GCCAATACATGTTTTATAAAAT---ATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 34061
||||| || || || |||| || | ||| |||| || ||||||||
Sbjct 329207 GCCAAAACGTGCGAAATGAAATGGCGTTCATTGTC-GGTG--AGACGCGCCCAATCATCC 329151
Query 34062 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113
|||||||| || | || || |||||||| ||||| || ||||| |||||||
Sbjct 329150 ATATCTTTGGAAAGGTCAACCTCTTCCACCGTCCAGAAGGATGCTTCTGCCT 329099
>seq32170
Length=3971
Score = 84.2 bits (92), Expect = 3e-11
Identities = 160/236 (68%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 63666 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63725
||||| || || | || || || ||||| || ||||| || || | |||||||||
Sbjct 3343 CCCGCGTTGAAGAGCGTCGGCGAGGCGTGGGTGAACCAGCGCTCCGACATCAGATTGTAC 3284
Query 63726 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63785
|||||||| || | ||| || ||| | ||||| || || ||||| ||||| | |||
Sbjct 3283 GTCTCAATGGCCGCGTCAATGTCCTCGTAGTGAATGCCCACGGCGACGCGCATCAGCATC 3224
Query 63786 TGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63845
||||| || | || || | || | || |||| || |||| | | ||
Sbjct 3223 TGCTGGGGGCGCTCCACCACCTTCCCGCCGATCTTCAGCAGGTAGCTGCGGTAGAGCGTC 3164
Query 63846 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 63901
|| || ||||| |||||||| |||||| || ||||| || || |||| |||||
Sbjct 3163 TTGAAGCCAAAGTAGTTGTAGTGAAAGTCGCGATCGTAGATGATGGCCGAGTTGAG 3108
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629135271357600
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