Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq13731 569 3e-157 seq22 232 8e-56 seq32170 84.2 3e-11 >seq13731 Length=15303 Score = 569 bits (630), Expect = 3e-157 Identities = 1271/1883 (67%), Gaps = 34/1883 (2%) Strand=Plus/Plus Query 62036 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62095 |||||||| || ||||| || | | | || ||||| ||||||| ||||||||||| Sbjct 559 CTTGTCCACAGTAAATTGTATAGCATTTGCAGCAGGTTTGGTACGTAAGTAGTACATTCC 618 Query 62096 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62155 ||||||||||| |||| || || ||||| ||| ||||||||| ||| | || Sbjct 619 TGTTTTTAGACCCGCTTTCCAGCCATAGAAATGTATAGAAGTTAGTTTGCCATAGTTTGG 678 Query 62156 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62215 ||||| | ||| || || | ||||| ||||| |||||||| ||||||| ||||| || Sbjct 679 CTCTGCGACATGTATGTTAAACGATTGGCTTTGGTCGATGAATGCTCCCCGATCTGCTGC 738 Query 62216 CATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 62274 |||||| || || || | |||||||| | |||||| || | |||| ||| | Sbjct 739 CATTTTAATTGAAGTTTTAACCGAGATTTCCCATACAGTTTTGTACAGATCGCG-AATGT 797 Query 62275 -CTTCTGGAAGGTTTGTATTC--TGAATGGATCCACCATCTACCA-TAATCCTATTCTTG 62330 || | | | || || ||| | || ||||| |||| ||| | |||| |||| || Sbjct 798 GCTGCGGTATGGATTCTATGCCTTGTATGGAGCCACGG-CTAGTAATAATTTTATTTTTC 856 Query 62331 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACT 62390 || ||||||| ||| || ||| || | | | | || | ||| | || || ||| Sbjct 857 ATGTCATCATCCCACAAACCCAACTCAGTGAGATCGCGCAGCAAATGATGATTTACAACT 916 Query 62391 TGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62450 || ||||| ||||| | ||| | || ||||| || ||| || || ||||| | ||| Sbjct 917 TGAAATTCGCCAGAGAGTACGCGACGTGTGTAGATGTTAGAAGTGTAGGGTTCGAATGAC 976 Query 62451 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62510 |||||||| |||| ||||| |||||||| || || ||||||||||| | || | | Sbjct 977 TCATTATTGCCCATGATTTGCGCAGTTGAAGCGGTGGGCATAGGTGCAAGCAGGAGGGAA 1036 Query 62511 TTTCTAAGACCGTA-TGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGA 62569 || |||| ||| | |||| | ||||| || || | | | ||| ||||| || || | Sbjct 1037 TTCCTAACACCATGCTGTT-TAATTTTCTCCTTCAATTCTGTCCAGTTCCAGAGCTCAGT 1095 Query 62570 CGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACAT 62628 || | |||||||||||| || || || | | || | ||| ||| Sbjct 1096 GGGCTTCTTATCCCACATGTCATATTGTAGAATTCCCTTGCTAACTGGAC-AGCCTTCAT 1154 Query 62629 ATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAAT 62688 | || ||||| | || | |||||||| | || |||||| || ||||||||||| |||| Sbjct 1155 AAGTTTCATAGGTACCGTATTTCTCAGCCAATTCACAACTAGCTTCTAATGCACCATAAT 1214 Query 62689 AAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAAT 62748 |||||||||| || | || | ||||| | ||||| ||| || | ||||| Sbjct 1215 AAATGGTTTCGAAAACCTGTTGATTTAAAAGGAATGCTTGTTCGCTTTCGTACGGATAGC 1274 Query 62749 TTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 62808 | || |||| ||||| || || ||||| || || || ||||| || | ||||| Sbjct 1275 GCATAAGTATAAGAGCGTCTGCAAAACCTTGTACGCCGATCCCGATTGGACGGTGTCTAA 1334 Query 62809 TATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 62868 || || ||| || || || | || || | ||| || || || |||||||| | || Sbjct 1335 AGTTTGATTTTTTTGCCTCGGGCAATGGGTAGTGATTTATTTCAATGATTTTATTCAAAT 1394 Query 62869 TTC-TGACA-ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATC 62923 ||| || || | | |||| || ||||| || | ||||| | | || Sbjct 1395 TTCGTGTCACAGT--TTTGGTGACTTCCTTGAGCCGTTGGAAATCGTAAGTTTTTTCAGG 1452 Query 62924 TATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATC 62983 | | |||||||||||||| || | ||||| | || || || || ||||||| || | Sbjct 1453 TGTGACAAACATGTTCAAAGCGATTGATGCTAAGTTGCATACAGCCACCTCATCAGGTGC 1512 Query 62984 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTG 63043 | ||||| | || |||||||| ||||| || || || || || || | |||||| || Sbjct 1513 AGAATATTCGACAATTTCAGTGCATAGATTGCTGCATTTAATGGTGCCAATATTTTGCTG 1572 Query 63044 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 63103 |||||| ||| | ||||| |||||||| || | || | || ||||| || || | ||| Sbjct 1573 ATTACTTTTTCTATTACAGGCATCCTTGTACAACATATAAGGTGTACCGGTCTCCACCTG 1632 Query 63104 AGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAG-ATTTGTATCTCCTT 63161 ||||| || || || ||| | |||| |||| || | | ||| | ||||| Sbjct 1633 GGATTCAATGATGGCGAACCAAA-GACTTTGAGCTTTCACCGTCTTATTAGCGCGTCCTT 1691 Query 63162 TCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTA 63221 || |||| || ||||| ||| |||||| || || |||||||| | | || | | Sbjct 1692 CCT-TTTCATACTTTGTATATAATTTTTCGAATTCTTCGCCCCAAACCTCATGTAAGCCA 1750 Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281 ||||||| || ||||||||||| ||||||||||||| | | | ||| |||| ||| || Sbjct 1751 GGACATTTATGTGGACACATCAATGACCACTCTCCGTTAGCTTCCACACGTTCCATGAAT 1810 Query 63282 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTA 63341 | ||| || ||||| | ||| ||||| |||||| | || || || || ||||| ||| Sbjct 1811 AAATCTGGTATCCACAAAGCATAAAATAAATCTCTGGCTCGGTGCTCTTCTTTTCCAGTA 1870 Query 63342 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63401 ||||| || | ||| | ||| | | |||||| | |||||| ||||||||||| ||||| Sbjct 1871 TTCTTCTTCAAATCCAAAAACTCAAAAATATCTGCATGCCATGGTTCCAAGTAAATGGCA 1930 Query 63402 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63461 | | |||||||| ||| || |||||||||| ||| | || |||||| | || Sbjct 1931 AAGGCGCCAGGCCGCTTGCCACCACCCTGATCTACGTAACGTGCAACGTTATTGAATACC 1990 Query 63462 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG 63521 | ||||||||| | | ||| ||||| | ||||| || || | ||| || | Sbjct 1991 CGCAACATTGGTACCAAACCATTTGAAGTGCCATTTGTGCCCGCGATTGCTGTGCCCTTT 2050 Query 63522 GCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63579 || || || | | ||| ||| || || || || || || || ||||| || | Sbjct 2051 GCTCGTATGCAATGGACATT--TAGTCCAATGCCACCAGCAGACTTGGAAATTAAAGCAC 2108 Query 63580 A-TCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63638 | | || | ||| | | || || || ||| |||| | ||| | | ||| ||| Sbjct 2109 ATTGGTGGGCAGATGT-AAATATACCATCAATGGAATCACCAGCCATAGTCAATAGGAAA 2167 Query 63639 CAGCTAGACATTT---GGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 63695 ||| |||| || | || ||||| | | ||| ||| | || ||||| || || Sbjct 2168 CAGGATGACAATTGCGGTTGGCGAGTGG---CAGCAGCAAAGAGTGTTGGAGAGGCATGT 2224 Query 63696 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGA 63755 || || | ||| ||||| | || || || |||||||| | || ||||| | Sbjct 2225 GTGAAATAGCGTTCCGAAAGCAAGTTATAAGTTTCAATAGCGGCATCAATATCTTCACCA 2284 Query 63756 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTT 63815 ||||| || | | |||||||||||||||||||| || | ||||||||||||| || Sbjct 2285 TGAATACCAATGGAAACACGCATTAACATGTGCTGCGGACGTTCAACAATTTTGCCATTC 2344 Query 63816 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63875 | || | || ||||| || | ||||| ||||||||||| ||||| ||| || Sbjct 2345 AACTTGAGTAAATAGGAACGCTCAAGTGTTTTGAAACCAAAATAATTGTAACCAAAATCA 2404 Query 63876 CGTTCGTAAATAATAACCGAATT 63898 || || || || ||| ||||||| Sbjct 2405 CGGTCATATATTATAGCCGAATT 2427 >seq22 Length=933496 Score = 232 bits (256), Expect = 8e-56 Identities = 484/712 (68%), Gaps = 13/712 (2%) Strand=Plus/Minus Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAG 33469 ||| | |||||| || ||||| ||||| ||| | || |||||||| || || | Sbjct 329805 CAAGCGATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATCAA 329746 Query 33470 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAAT 33529 || || || | || |||| | |||||||||||||| || || | | || || Sbjct 329745 ATTCACAGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGCAATGAT 329686 Query 33530 A--AATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCG 33587 ||| ||||| || ||| || || | | |||| ||||||| || || Sbjct 329685 TTCAATAATACGGTCCCT--ACTTGGCTTCTGAATGAGGTGTTGGAACATCAGGCAAGCA 329628 Query 33588 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGC 33647 |||||||| || | || ||||| || ||||| || ||||| || || | || ||| Sbjct 329627 AAATCGCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCAGGC 329568 Query 33648 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCT 33707 |||||||| || || || |||||||| || ||||| || || |||||| || ||| Sbjct 329567 ATTAGGCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATGCCT 329508 Query 33708 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTC-ATGTA-TCCAC 33764 || || || ||||| || || | | || ||| | ||| | | || ||| | ||||| Sbjct 329507 TCAACCGCGGCAAATGCTATTATACGTTCGCCAAAGTTGGCCGATTTCGATGAAATCCAC 329448 Query 33765 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33824 | |||||||| ||||| || ||| ||||||||| || || ||||| || | Sbjct 329447 GCCAGTGCCCAATCAGCCTTGCGCTTAACAGCAGGCATCGTCTCAATAGCATTGAACAAG 329388 Query 33825 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 33884 || | ||| || | ||| |||| ||| ||||| || || | || |||||||| ||| Sbjct 329387 TAATCCCTTTGCTTGCCATCCTTAATATATGTATCAATTAATATGCTGTACATTTCAGAA 329328 Query 33885 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACT 33944 || | || || ||||| || |||||||| ||||| || | ||||| || || || ||| Sbjct 329327 TGCACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGATTTGAACT 329268 Query 33945 TCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAAC 34004 ||| | || ||||| |||| ||||||||||| || ||||| ||| ||||| || Sbjct 329267 TCTTGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGGCAAAGAAT 329208 Query 34005 GCCAATACATGTTTTATAAAAT---ATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 34061 ||||| || || || |||| || | ||| |||| || |||||||| Sbjct 329207 GCCAAAACGTGCGAAATGAAATGGCGTTCATTGTC-GGTG--AGACGCGCCCAATCATCC 329151 Query 34062 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 |||||||| || | || || |||||||| ||||| || ||||| ||||||| Sbjct 329150 ATATCTTTGGAAAGGTCAACCTCTTCCACCGTCCAGAAGGATGCTTCTGCCT 329099 >seq32170 Length=3971 Score = 84.2 bits (92), Expect = 3e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 63666 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63725 ||||| || || | || || || ||||| || ||||| || || | ||||||||| Sbjct 3343 CCCGCGTTGAAGAGCGTCGGCGAGGCGTGGGTGAACCAGCGCTCCGACATCAGATTGTAC 3284 Query 63726 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63785 |||||||| || | ||| || ||| | ||||| || || ||||| ||||| | ||| Sbjct 3283 GTCTCAATGGCCGCGTCAATGTCCTCGTAGTGAATGCCCACGGCGACGCGCATCAGCATC 3224 Query 63786 TGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63845 ||||| || | || || | || | || |||| || |||| | | || Sbjct 3223 TGCTGGGGGCGCTCCACCACCTTCCCGCCGATCTTCAGCAGGTAGCTGCGGTAGAGCGTC 3164 Query 63846 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 63901 || || ||||| |||||||| |||||| || ||||| || || |||| ||||| Sbjct 3163 TTGAAGCCAAAGTAGTTGTAGTGAAAGTCGCGATCGTAGATGATGGCCGAGTTGAG 3108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629135271357600