Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq13731 363 1e-95 seq22 199 4e-46 seq59797 114 1e-20 seq85186 89.7 5e-13 >seq13731 Length=15303 Score = 363 bits (402), Expect = 1e-95 Identities = 1200/1845 (65%), Gaps = 42/1845 (2%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || || |||| ||||| ||||| || | ||| || | | || |||||||| ||| Sbjct 563 TCCACAGTAAATTGTATAGCATTTGCAGCAGGTTTGGTACGTAAGTAGTACATTCCTGTT 622 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 ||||| ||| | |||| || || ||||| ||| || ||||| | || | || | Sbjct 623 TTTAGACCCGCTTTCCAGCCATAGAAATGTATAGAAGTTAGTTTGCCATAGTTTGGCTCT 682 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | || ||| | | ||||| ||||| || || || || || | || ||||||||| Sbjct 683 GCGACATGTATGTTAAACGATTGGCTTTGGTCGATGAATGCTCCCCGATCTGCTGCCATT 742 Query 36970 TCTAAAATACATTTTTGA--GATATCTCCCAAACCGTTTTATATATTTGTTTTATATTAT 37027 | || | | |||| | || || ||||| || ||||| || | | || | | Sbjct 743 TT--AATTGAAGTTTTAACCGAGATTTCCCATACAGTTTTGTACAGATCGCGAATGTGCT 800 Query 37028 CTGGTA---AATCTAAATGTTGAATAGAACCAT---TATGTAACACAATTGTATTCTTTA 37081 |||| | |||| ||| || || ||| || |||| | ||| |||| || | Sbjct 801 GCGGTATGGATTCTATGCCTTGTATGGAGCCACGGCTA-GTAATA--ATTTTATTTTTCA 857 Query 37082 TGTCATTATTCCACATATTTCTACTTATT-AGTTCTCTCAATAGGTGTGGATTTACAACC 37140 |||||| || ||||| | | ||| | | || || | || | || |||||||||| Sbjct 858 TGTCATCATCCCACAAACC-CAACTCAGTGAGATCGCGCAGCAAATGATGATTTACAACT 916 Query 37141 TGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGAC 37200 ||||| || ||||| | ||| | | ||| || || || ||| || ||||| | ||| Sbjct 917 TGAAATTCGCCAGAGAGTACGCGACGTGTGTAGATGTTAGAAGTGTAGGGTTCGAATGAC 976 Query 37201 TCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTA 37260 |||||||| | | ||||| | || || || || ||||| ||||| | || ||| | Sbjct 977 TCATTATTGCCCATGATTTGCGCAGTTGAAGCGGTGGGCATAGGTGCAAGCAGGAGGGAA 1036 Query 37261 TTTCTCAATCCATG-TGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGT 37319 || || | ||||| ||| |||||| ||| || | ||| |||| | ||| | || || Sbjct 1037 TTCCTAACACCATGCTGT-TTAATTTTCTCCTTCAATTCTGTCCAGTTCCAGAGCTCAGT 1095 Query 37320 TGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATA 37379 || ||||| |||||| |||||||||||||| || || || ||||| | | | ||| Sbjct 1096 GGGCTTCTTATCCCACATGTCATATTGTAGAATTCCCTTGCTAACTGGACAGCCTTCATA 1155 Query 37380 TGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATA 37439 || ||||| | ||||| | | ||| | ||| ||||||| ||||| ||| ||||||| Sbjct 1156 AGTTTCATAGGTACCGTATTTCTCAGCCAATTCACAACTAGCTTCTAATGCACCATAATA 1215 Query 37440 TATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCC 37499 || |||||||||| ||| |||||| | ||||| |||||| ||| | | ||||| Sbjct 1216 AATGGTTTCGAAAACCTGTTGATTTAAAAGGAATGCTTGTTCGCTTTCGTACGGATAGCG 1275 Query 37500 CAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTT 37559 || | ||||| | || || ||||| || || ||||| || || || | ||| | Sbjct 1276 CATAAGTATAAGAGCGTCTGCAAAACCTTGTACGCCGATCCCGATTGGACGGTGTCTAAA 1335 Query 37560 ATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATT 37619 || ||| | | || || ||| || | ||| || || || |||||||| | ||| Sbjct 1336 GTTTGATTTTTTTGCCTCGGGCAATGGGTAGTGATTTATTTCAATGATTTTATTCAAATT 1395 Query 37620 ---TTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTATT--- 37673 | | || || |||| || | | | || | || | | || || ||| || Sbjct 1396 TCGTGTCAC-AG--TTTTGGTGACT-TCCTTGAGCCGTTGGAAAT-CGTAAGTTTTTTCA 1450 Query 37674 --ATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCG 37731 | ||||| | |||| | || ||| ||| || |||||||| || ||||| Sbjct 1451 GGTGTGACAAACATGTTCAAAGCGATTGATGCTAAGTTGCATACAGCCACCTCATCAGGT 1510 Query 37732 TTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTT 37791 | | ||| | ||| || || || ||||| || || |||| || || | ||| Sbjct 1511 GCAGAATATTCGACAATTTCAGTGCATAGATTGCTGCATTTAATGGTGCCAATATTTTGC 1570 Query 37792 TGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATT 37851 ||||| |||| ||||||| | ||| || || | ||||| || || || || | Sbjct 1571 TGATTACTTTTTCTATTACAGGCATCCTTGTACAACATATAAGGTGTACCGGTCTCCACC 1630 Query 37852 TGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTA--Atttttt 37909 || | || || || | ||| | |||| ||||| || || ||| | | Sbjct 1631 TGGGATTCAATGATGGCGAACCAAAGACTTTGAGCTTTCACCGTCTTATTAGCGCGTCCT 1690 Query 37910 tCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATC 37969 || | |||| || | | |||||||||| | || || | ||||| || || ||| | Sbjct 1691 TCCT--TTTCATACTTTGTATATAATTTTTCGAATTCTTCGCCCCAAACCTCATGTAAGC 1748 Query 37970 CTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAA 38029 | ||||||| ||||||||| | ||||| ||| | | ||| || |||||||| | Sbjct 1749 CAGGACATTTATGTGGACACATCAATGACCACTCTCCGTTAGCTTCCACACGTTCCATGA 1808 Query 38030 ATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTA 38089 ||||||| |||| ||| || ||| |||||||||| ||| || | ||||| || || Sbjct 1809 ATAAATCTGGTATCCACAAAGCATAAAATAAATCTCTGGCTCGGTGCTCTTCTTTTCCAG 1868 Query 38090 CATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCG 38149 |||||| | || | ||| || || ||||| || ||||||||||| | ||||| | Sbjct 1869 TATTCTTCTTCAAATCCAAAAACTCAAAAATATCTGCATGCCATGGTTCCAAGTAAATGG 1928 Query 38150 ACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATA 38209 | || || || | || |||| ||||||| | || | | |||||| ||| Sbjct 1929 CAAAGGCGCCAGGCCGCTTGCCACCACCCTGATCTACGTAACGTGCAACGTTATTGAATA 1988 Query 38210 TTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCT 38269 | ||||| ||||| | |||||| || |||| ||| | || | || || |||| Sbjct 1989 CCCGCAACATTGGTACCAAACCATTTGAAGTGCCATTTGTGCCCGCGATTGCTGTGCCCT 2048 Query 38270 TAGCTCGTAT---AT-TACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAA 38325 | |||||||| || || | | | ||| || ||||| ||| || || |||||| Sbjct 2049 TTGCTCGTATGCAATGGACATTT----AGTCCAATGCCACCAGCAGACTTGGAAATTAAA 2104 Query 38326 GCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATA 38385 || ||||| | | ||||||||| || || ||| | || | | || Sbjct 2105 GCACATTGGTGGGCAGATGTAAATATACCATCAATGGAATCACCAGCCATAGTCAATAGG 2164 Query 38386 AAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGT 38445 ||||| |||| ||| || |||| | || ||| | ||| ||||| |||||| Sbjct 2165 AAACAGGATGACAATTGCGGTTGGCGAGTGGCAGCAGCAAAGAGTGTTGGAGAGGCATGT 2224 Query 38446 ATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCG 38505 |||| | |||||| | | ||||| ||||| || | |||| ||||| | || Sbjct 2225 GTGAAATAGCGTTCCGAAAGCAAGTTATAAGTTTCAATAGCGGCATCAATATCTTCACCA 2284 Query 38506 TGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTC 38565 |||||||| | || || | ||||| ||| || || || | ||| | ||||| |||| Sbjct 2285 TGAATACCAATGGAAACACGCATTAACATGTGCTGCGGACGTTCAACAATTTTGCCATTC 2344 Query 38566 TGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAA 38610 || |||| ||| || || | |||||| | ||||||||| Sbjct 2345 AACTTGAGTAAATAGGAACGCTCAAGTGTTTTGAAACCAAAATAA 2389 >seq22 Length=933496 Score = 199 bits (220), Expect = 4e-46 Identities = 411/600 (69%), Gaps = 15/600 (3%) Strand=Plus/Minus Query 11464 ATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCAC 11523 |||||| || ||||| ||||| | |||||||| |||||||| || || | || ||| Sbjct 329799 ATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATCAAATTCAC 329740 Query 11524 CGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCA---ATGATTATCGA 11580 || | ||| | || || || || | ||| || ||||| || ||| |||||| || | Sbjct 329739 AGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGCAATGATT-TCAA 329681 Query 11581 CGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATC 11640 | ||| ||| || ||| || | | |||| ||||| | || |||||||| Sbjct 329680 --TAATACGGTCCCTACTTGGCTTCTGAATGAGGTGTTGGAACATCAGGCAAGCAAAATC 329623 Query 11641 ACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAA 11700 |||||||| |||||||| || ||||| |||||||| ||||| || || ||||| | Sbjct 329622 GCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCAGGCATTAG 329563 Query 11701 TCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCAC 11760 || ||||| || | |||||| || | |||||| ||| |||||| || || || || Sbjct 329562 GCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATGCCTTCAAC 329503 Query 11761 AGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTGCTA-GATATCCATTTTCT 11817 || |||||||||| || | ||| ||| | | | || | | || ||||| Sbjct 329502 CGCGGCAAATGCTATTATACGTTCGCCAAAGTTGGCCGATTTCGATGAAATCCACGCCAG 329443 Query 11818 GGCCCAATCAGCTTTCTTTTTTAC-GCATTCCATTGTTTCTATAGCGTTAAATAAATGCA 11876 ||||||||||| || || || ||| | || || || ||||| || || || | | Sbjct 329442 TGCCCAATCAGCCTTGCGCTTAACAGCAGGC-ATCGTCTCAATAGCATTGAACAAGTA-A 329385 Query 11877 TT--TTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATG 11934 | ||| || | ||| | | ||||||||| ||||||| || |||||||| ||||| Sbjct 329384 TCCCTTTGCT-TGCCATCCTTAATATATGTATCAATTAATATGCTGTACATTTCAGAATG 329326 Query 11935 AATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATC 11994 | ||| ||||| || ||||||||||||||||| || || ||||||| || || || Sbjct 329325 CACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGATTTGAACTTC 329266 Query 11995 CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGC 12054 || | ||| |||| || ||||| ||||||||||| | ||||| ||||| Sbjct 329265 TTGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGGCAAAGAATGC 329206 >seq59797 Length=1646 Score = 114 bits (126), Expect = 1e-20 Identities = 151/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 |||| ||||||||| ||||| || || |||||||| |||| || || | ||| || || Sbjct 1634 ATTAATTCATTAGAGAATGTCAAACCAGGCATCAAACCTCTCTTCTTGAGCCAGAAAATG 1575 Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785 | |||||||||||||| ||||| || || || || || ||||||||||||| ||| || Sbjct 1574 GATGCAAATGAACCAGAGAAGAAAATACCTTCTACGGCAGCAAATGCTACTAGTCTCTCA 1515 Query 11786 CCA---TATACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACG 11842 ||| || | || | | | ||||| || ||||| |||||||| || | | Sbjct 1514 CCAAATGATGCTTTCTCGTCATTGATCCACTTAACTGCCCAGTCAGCTTTGCGCTTAATG 1455 Query 11843 CATTCCATTGTTTCTATAGCGTTAAATAA 11871 ||| || ||||| |||||||| || || Sbjct 1454 CATGGAATAGTTTCAATAGCGTTGAACAA 1426 >seq85186 Length=1023 Score = 89.7 bits (98), Expect = 5e-13 Identities = 173/250 (69%), Gaps = 8/250 (3%) Strand=Plus/Plus Query 37144 AAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCA 37203 || || || ||||| || | ||||||||| || || ||||||||||||| | | ||| Sbjct 736 AATTCACCTGATAAAACACGTCTTGTATAAATGTTTGACGTATATGGTTCAAAGCATTCA 795 Query 37204 TTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTT 37263 ||| | | |||||| || || || || || ||||||||||| | | ||| ||| Sbjct 796 TTAAATCCAAGTATTTGTGACGTTGAGGCTGTTGGCATTGGTGCAACCAAAAGTGAGTTT 855 Query 37264 CTCAATCCATGTGTATTAA--TTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTG 37321 || || ||| || | || || ||||| | || |||||||||| | | | |||| Sbjct 856 CTTAAACCACGTTGAGCAACTTTTTCTTTCAAACTT--GTCCAATCCCAAAGACCAGTTG 913 Query 37322 G-GT-TCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATA 37379 | || | || ||| | |||||||| || |||||| || |||||| | ||| ||| Sbjct 914 GTGTAACATT--CCATAAGTCATATTGAAGTTGACCTTTGCTTGCTGGACTACCGTGATA 971 Query 37380 TGTCTCATAA 37389 || ||| ||| Sbjct 972 TGACTCGTAA 981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468017211944800