Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq13731 581 4e-161 seq22 259 6e-64 seq32170 93.3 6e-14 seq59797 84.2 3e-11 >seq13731 Length=15303 Score = 581 bits (644), Expect = 4e-161 Identities = 1266/1878 (67%), Gaps = 24/1878 (1%) Strand=Plus/Plus Query 64829 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 64888 |||||||| || ||||| || | | | || ||||| ||||||| ||||||||||| Sbjct 559 CTTGTCCACAGTAAATTGTATAGCATTTGCAGCAGGTTTGGTACGTAAGTAGTACATTCC 618 Query 64889 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 64948 ||||||||||| |||| || || ||||| ||| ||||||||| ||| | || Sbjct 619 TGTTTTTAGACCCGCTTTCCAGCCATAGAAATGTATAGAAGTTAGTTTGCCATAGTTTGG 678 Query 64949 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 65008 ||||| | ||| || || | ||||| ||||| |||||||| ||||||| ||||| || Sbjct 679 CTCTGCGACATGTATGTTAAACGATTGGCTTTGGTCGATGAATGCTCCCCGATCTGCTGC 738 Query 65009 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 65067 |||||| || || || | |||||||| | |||||| || | |||| ||| | Sbjct 739 CATTTTAATTGAAGTTTTAACCGAGATTTCCCATACAGTTTTGTACAGATCGCG-AATGT 797 Query 65068 -CTTCTGGAAGGTTTGTATTC--TGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 65124 || | | | || || ||| | || ||||| |||| | ||||| |||| || | Sbjct 798 GCTGCGGTATGGATTCTATGCCTTGTATGGAGCCACGGCTAGTAATAATTTTATTTTTCA 857 Query 65125 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 65184 | ||||||| ||| || ||| || | | | | || | ||| |||| || |||| Sbjct 858 TGTCATCATCCCACAAACCCAACTCAGTGAGATCGCGCAGCAAATGATGATTTACAACTT 917 Query 65185 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACT 65244 ||||||| ||||| | ||| | || ||||| || ||| || || ||||| | |||| Sbjct 918 GAAATTCGCCAGAGAGTACGCGACGTGTGTAGATGTTAGAAGTGTAGGGTTCGAATGACT 977 Query 65245 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 65304 ||||||| |||| ||||| |||||||| || || ||||||||||| | || | || Sbjct 978 CATTATTGCCCATGATTTGCGCAGTTGAAGCGGTGGGCATAGGTGCAAGCAGGAGGGAAT 1037 Query 65305 TTCTAAGACCGTA-TGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 65363 | |||| ||| | |||| | ||||| || || | | ||| ||||| || || | Sbjct 1038 TCCTAACACCATGCTGTT-TAATTTTCTCCTTCAATTCTGTCCAGTTCCAGAGCTCAGTG 1096 Query 65364 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 65422 || ||||||||| || || || | | || | ||| |||| Sbjct 1097 GGCTTCTTATCCCACATGTCATATTGTAGAATTCCCTTGCTAACTGGAC-AGCCTTCATA 1155 Query 65423 TGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATA 65482 || || || | || | |||||||| | ||||||||| || ||||||||||| ||||| Sbjct 1156 AGTTTCATAGGTACCGTATTTCTCAGCCAATTCACAACTAGCTTCTAATGCACCATAATA 1215 Query 65483 AATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATT 65542 |||||||||||| | || | ||||| | ||||| ||| || | ||||| Sbjct 1216 AATGGTTTCGAAAACCTGTTGATTTAAAAGGAATGCTTGTTCGCTTTCGTACGGATAGCG 1275 Query 65543 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 65602 | || |||| |||||||| || ||||| || || || ||||| || | ||||| Sbjct 1276 CATAAGTATAAGAGCGTCTGCAAAACCTTGTACGCCGATCCCGATTGGACGGTGTCTAAA 1335 Query 65603 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 65662 || || ||| || || || | || || | ||| || || || |||||||| | ||| Sbjct 1336 GTTTGATTTTTTTGCCTCGGGCAATGGGTAGTGATTTATTTCAATGATTTTATTCAAATT 1395 Query 65663 TC-TGACA-ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCTCATCT 65717 || || || | | |||| || ||||| || | ||||| | | ||| | Sbjct 1396 TCGTGTCACAGT--TTTGGTGACTTCCTTGAGCCGTTGGAAATCGTAAGTTTTTTCAGGT 1453 Query 65718 ATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 65777 | |||||||||||||| || | ||||| | || || || || ||||||| || | Sbjct 1454 GTGACAAACATGTTCAAAGCGATTGATGCTAAGTTGCATACAGCCACCTCATCAGGTGCA 1513 Query 65778 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 65837 | ||||| | || |||||||| ||||| || || || ||||| || | |||||| ||| Sbjct 1514 GAATATTCGACAATTTCAGTGCATAGATTGCTGCATTTAATGGTGCCAATATTTTGCTGA 1573 Query 65838 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 65897 ||||| ||| | ||||| |||||||| || | || | || ||||| || || | ||| Sbjct 1574 TTACTTTTTCTATTACAGGCATCCTTGTACAACATATAAGGTGTACCGGTCTCCACCTGG 1633 Query 65898 GATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAG-ATTTGTATCTCTTTT 65955 ||||| || || || ||| | |||| |||| || | | ||| | || || Sbjct 1634 GATTCAATGATGGCGAACCAAA-GACTTTGAGCTTTCACCGTCTTATTAGCGCGTCCTTC 1692 Query 65956 CTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAG 66015 || |||| || |||||| ||| |||||| || || |||||||| | | || |||| Sbjct 1693 CT-TTTCATACTTTGTATATAATTTTTCGAATTCTTCGCCCCAAACCTCATGTAAGCCAG 1751 Query 66016 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 66075 |||||| || ||||||||||| ||||||||||||| | | | ||| |||| ||| || | Sbjct 1752 GACATTTATGTGGACACATCAATGACCACTCTCCGTTAGCTTCCACACGTTCCATGAATA 1811 Query 66076 GATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 66135 ||| || ||||| | ||| |||||||||||||| || || || || ||||| |||| Sbjct 1812 AATCTGGTATCCACAAAGCATAAAATAAATCTCTGGCTCGGTGCTCTTCTTTTCCAGTAT 1871 Query 66136 TCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCA 66195 |||| || | ||| | ||| | | |||||| |||||| ||||||||||| ||||| | Sbjct 1872 TCTTCTTCAAATCCAAAAACTCAAAAATATCTGCATGCCATGGTTCCAAGTAAATGGCAA 1931 Query 66196 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 66255 | |||||||| ||| || |||||||||| ||| | || |||||| | || | Sbjct 1932 AGGCGCCAGGCCGCTTGCCACCACCCTGATCTACGTAACGTGCAACGTTATTGAATACCC 1991 Query 66256 TCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTG 66315 ||||||||| | | |||||| || || ||||| || || | ||| | || ||| Sbjct 1992 GCAACATTGGTACCAAACCATTTGAAGTGCCATTTGTGCCCGCGATTGCTGTGCCCTTTG 2051 Query 66316 CACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 66373 | || || | | ||| ||| || || || || || || || ||||| || || Sbjct 2052 CTCGTATGCAATGGACATT--TAGTCCAATGCCACCAGCAGACTTGGAAATTAAAGCACA 2109 Query 66374 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 66433 | | | | | | || || || || |||| | ||| | | ||| ||||| Sbjct 2110 TTGGTGGGCAGATGTAAATATACCATCAATGGAATCACCAGCCATAGTCAATAGGAAACA 2169 Query 66434 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 66493 | |||| ||| | | | ||| | ||| ||| | || ||||| || || || || Sbjct 2170 GGATGACAATTGCGGTTGGCGAGTGGCAGCAGCAAAGAGTGTTGGAGAGGCATGTGTGAA 2229 Query 66494 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 66553 | ||| ||||| | || || || |||||||| | || ||||| |||||| Sbjct 2230 ATAGCGTTCCGAAAGCAAGTTATAAGTTTCAATAGCGGCATCAATATCTTCACCATGAAT 2289 Query 66554 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 66613 || | | |||||||||||||||||||| || | |||||| || ||| || | || Sbjct 2290 ACCAATGGAAACACGCATTAACATGTGCTGCGGACGTTCAACAATTTTGCCATTCAACTT 2349 Query 66614 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 66673 | || ||||| || | ||||| ||||||||||| ||||| ||| || || || Sbjct 2350 GAGTAAATAGGAACGCTCAAGTGTTTTGAAACCAAAATAATTGTAACCAAAATCACGGTC 2409 Query 66674 GTAAATAATAACCGAGTT 66691 || || ||| |||| || Sbjct 2410 ATATATTATAGCCGAATT 2427 >seq22 Length=933496 Score = 259 bits (286), Expect = 6e-64 Identities = 490/712 (69%), Gaps = 13/712 (2%) Strand=Plus/Minus Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 36045 ||| | |||||| |||||||| ||||| ||| | || |||||||| || || | Sbjct 329805 CAAGCGATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATCAA 329746 Query 36046 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105 || || || | || |||| | |||||||||||||| || || || | || || Sbjct 329745 ATTCACAGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGCAATGAT 329686 Query 36106 AG--ATATTACTGTTTCTTCACTCGGTGGATAC--AATAAA-TGTTTAAACATCAAACAT 36160 ||| ||| || || ||| ||| | | ||| | |||| ||||||| || Sbjct 329685 TTCAATAATACGGTCCCT--ACT---TGGCTTCTGAATGAGGTGTTGGAACATCAGGCAA 329631 Query 36161 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 36220 || |||||||| |||| || ||||| || ||||| || || || || || | || Sbjct 329630 GCAAAATCGCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCA 329571 Query 36221 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATT 36280 ||||||||||| || || || |||||||| || || ||||| ||| ||||||||| Sbjct 329570 GGCATTAGGCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATG 329511 Query 36281 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC-TGTC-ATGTA-TC 36337 ||||| || || ||||| || || | | || ||| | ||| | || ||| | || Sbjct 329510 CCTTCAACCGCGGCAAATGCTATTATACGTTCGCCAAAGTTGGCCGATTTCGATGAAATC 329451 Query 36338 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 36397 ||| | |||||||| ||||| || ||| |||||| ||||| |||||||| || Sbjct 329450 CACGCCAGTGCCCAATCAGCCTTGCGCTTAACAGCAGGCATCGTCTCAATAGCATTGAAC 329391 Query 36398 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCC 36457 | || | ||| || | ||| |||| |||||||||||| || | || |||||||| Sbjct 329390 AAGTAATCCCTTTGCTTGCCATCCTTAATATATGTATCAATTAATATGCTGTACATTTCA 329331 Query 36458 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 36517 ||||| | || || ||||| ||||||||||| ||||| || | ||||| || || || Sbjct 329330 GAATGCACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGATTTGA 329271 Query 36518 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 36577 |||||| | || ||||| |||| ||||||||||| || || || ||| ||||| Sbjct 329270 ACTTCTTGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGGCAAAG 329211 Query 36578 AACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTG 36637 || ||||| || || || |||| ||| || || || |||||||| Sbjct 329210 AATGCCAAAACGTGCGAAATGAAATGGCGTTCATTGTCGGTGAGACGCGCCCAATCATCC 329151 Query 36638 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 36689 |||||||| || | || || |||||||| ||||| || ||||| ||||||| Sbjct 329150 ATATCTTTGGAAAGGTCAACCTCTTCCACCGTCCAGAAGGATGCTTCTGCCT 329099 >seq32170 Length=3971 Score = 93.3 bits (102), Expect = 6e-14 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 66459 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 66518 ||||| || || | || || || ||||| || ||||| || || | ||||||||| Sbjct 3343 CCCGCGTTGAAGAGCGTCGGCGAGGCGTGGGTGAACCAGCGCTCCGACATCAGATTGTAC 3284 Query 66519 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 66578 |||||||| || | ||| || ||| | ||||| || || ||||| ||||| | ||| Sbjct 3283 GTCTCAATGGCCGCGTCAATGTCCTCGTAGTGAATGCCCACGGCGACGCGCATCAGCATC 3224 Query 66579 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 66638 ||||| || | || || | ||| | || |||| || |||| | | || Sbjct 3223 TGCTGGGGGCGCTCCACCACCTTCCCGCCGATCTTCAGCAGGTAGCTGCGGTAGAGCGTC 3164 Query 66639 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 66694 || || ||||| |||||||| |||||| || ||||| || || |||||||||| Sbjct 3163 TTGAAGCCAAAGTAGTTGTAGTGAAAGTCGCGATCGTAGATGATGGCCGAGTTGAG 3108 >seq59797 Length=1646 Score = 84.2 bits (92), Expect = 3e-11 Identities = 183/272 (67%), Gaps = 3/272 (1%) Strand=Plus/Minus Query 36428 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 36487 || |||||||||||||| || | || || || || || || || || || || Sbjct 1349 TAGGTATCAATCAAAAGTGAGTAAGTCTCGGAGTGTATATTCTCCATCATAATCTGGAAA 1290 Query 36488 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTT 36547 |||||||||||||| || || | | |||||| || | | |||| ||| || || Sbjct 1289 CCGTAGAAACATCTTGCTTCTGCGAGCTGTACCTCGGAGGAGAATCTTTCGAGTAGGTTC 1230 Query 36548 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 36607 ||||| || || |||||| || || || || || |||||||| | || || | || Sbjct 1229 TCATTGACAATACCGTCAGATGCGGCGAAGAATGCTAATACATGACTAATGAAGTGCTTC 1170 Query 36608 TCGT--TTGGTGTTAGT-TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCC 36664 || | ||| | | | || | ||| || ||||||| || || | |||| |||||| Sbjct 1169 TCATCCTTGTTTATCTTGTTCTGCCAGTCCGTGATATCCTTCGACAAGTCCATTTCTTCT 1110 Query 36665 ACTGTCCAAAATGATGCCTCTGCCTTTTTATA 36696 | ||||| || || || ||||| || || || Sbjct 1109 GCAGTCCAGAAAGAAGCTTCTGCTTTCTTGTA 1078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657459752042800