Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq81517 111 1e-19
seq49536 93.3 4e-14
>seq81517
Length=1088
Score = 111 bits (122), Expect = 1e-19
Identities = 191/277 (69%), Gaps = 8/277 (3%)
Strand=Plus/Plus
Query 20927 GGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGG 20986
||| |||| || ||||| || || ||||| ||||| | |||||||| || ||||| ||
Sbjct 477 GGGTTCAATATGATTGTTATAGACATGGGCATCACCAAGAGTGTGCACGAATTCTCCGGG 536
Query 20987 GGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAA 21046
|| || || ||||| || |||| ||| || | | || || |||||| || ||
Sbjct 537 ACGAAGTCCGGTCACGTGTGCAATCATATATGTTAACAAAGCATAAGAGGCGATATTGAA 596
Query 21047 CGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCG 21106
|| || || | |||||||| ||| | || |||| ||| || |||||||| ||
Sbjct 597 TGGCACGCCCAATCCCATGTCAGCGCTACGTTGATACAACTGACAAGACAGCTCACCATT 656
Query 21107 AGCCACGTAAAACTG----ACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGT 21162
|| ||| |||| || | |||| ||||||||||| || ||||| ||| | ||
Sbjct 657 TGCAACGAAAAATTGTGCTAGACAA----TGACAAGGAGGTAGTGCCATTTGCGGAATGT 712
Query 21163 CCGCGGGGTTCCACGCGCACATAACGATGCGCCGATC 21199
| ||| |||||||| |||| | ||||| |||||
Sbjct 713 CAAGGGGATTCCACGCAGACATTATTATGCGACGATC 749
>seq49536
Length=2110
Score = 93.3 bits (102), Expect = 4e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 20934 ACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGG 20993
||||| || ||||| | ||| || || || | |||||||||||| || |||| |||||
Sbjct 1878 ACGTGATTCTTGTAGATGTGAGCATCGCCAATGGTGTGCACAAACTCGCCCGCCTTCAGG 1937
Query 20994 CCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACC 21053
|| |||||| ||||||| | ||||| || | ||||||||| ||||| || || ||
Sbjct 1938 CCGCAGACGTGGGCGATCATGTGGGTCAGCAGCGAGTAGCTGGCAATGTTGAAGGGCACA 1997
Query 21054 CCGAGGCCC 21062
|| ||||||
Sbjct 1998 CCCAGGCCC 2006
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427324144221600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |