Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq81517 111 1e-19 seq49536 93.3 4e-14 >seq81517 Length=1088 Score = 111 bits (122), Expect = 1e-19 Identities = 191/277 (69%), Gaps = 8/277 (3%) Strand=Plus/Plus Query 20927 GGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGG 20986 ||| |||| || ||||| || || ||||| ||||| | |||||||| || ||||| || Sbjct 477 GGGTTCAATATGATTGTTATAGACATGGGCATCACCAAGAGTGTGCACGAATTCTCCGGG 536 Query 20987 GGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAA 21046 || || || ||||| || |||| ||| || | | || || |||||| || || Sbjct 537 ACGAAGTCCGGTCACGTGTGCAATCATATATGTTAACAAAGCATAAGAGGCGATATTGAA 596 Query 21047 CGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCG 21106 || || || | |||||||| ||| | || |||| ||| || |||||||| || Sbjct 597 TGGCACGCCCAATCCCATGTCAGCGCTACGTTGATACAACTGACAAGACAGCTCACCATT 656 Query 21107 AGCCACGTAAAACTG----ACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGT 21162 || ||| |||| || | |||| ||||||||||| || ||||| ||| | || Sbjct 657 TGCAACGAAAAATTGTGCTAGACAA----TGACAAGGAGGTAGTGCCATTTGCGGAATGT 712 Query 21163 CCGCGGGGTTCCACGCGCACATAACGATGCGCCGATC 21199 | ||| |||||||| |||| | ||||| ||||| Sbjct 713 CAAGGGGATTCCACGCAGACATTATTATGCGACGATC 749 >seq49536 Length=2110 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 20934 ACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGG 20993 ||||| || ||||| | ||| || || || | |||||||||||| || |||| ||||| Sbjct 1878 ACGTGATTCTTGTAGATGTGAGCATCGCCAATGGTGTGCACAAACTCGCCCGCCTTCAGG 1937 Query 20994 CCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACC 21053 || |||||| ||||||| | ||||| || | ||||||||| ||||| || || || Sbjct 1938 CCGCAGACGTGGGCGATCATGTGGGTCAGCAGCGAGTAGCTGGCAATGTTGAAGGGCACA 1997 Query 21054 CCGAGGCCC 21062 || |||||| Sbjct 1998 CCCAGGCCC 2006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427324144221600