Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq13731 607 1e-168 seq22 253 3e-62 seq40302 116 5e-21 seq32170 95.1 2e-14 >seq13731 Length=15303 Score = 607 bits (672), Expect = 1e-168 Identities = 1273/1880 (68%), Gaps = 28/1880 (1%) Strand=Plus/Plus Query 78708 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 78767 |||||||| || ||||| || | | | || ||||| ||||||| ||||||||||| Sbjct 559 CTTGTCCACAGTAAATTGTATAGCATTTGCAGCAGGTTTGGTACGTAAGTAGTACATTCC 618 Query 78768 CGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGG 78827 ||||||||||| |||| || |||||||| ||| ||||||||| ||| | || Sbjct 619 TGTTTTTAGACCCGCTTTCCAGCCATAGAAATGTATAGAAGTTAGTTTGCCATAGTTTGG 678 Query 78828 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 78887 ||||| | ||| || || | ||||| ||||| |||||||| ||||||| ||||| || Sbjct 679 CTCTGCGACATGTATGTTAAACGATTGGCTTTGGTCGATGAATGCTCCCCGATCTGCTGC 738 Query 78888 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATAT 78946 |||||| || || || | |||||||| | |||||| || | |||| ||| | Sbjct 739 CATTTTAATTGAAGTTTTAACCGAGATTTCCCATACAGTTTTGTACAGATCGC-GAATGT 797 Query 78947 -CTTCTGGAAGGTTTGTATTC--TGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 79003 || | | | || || ||| | || ||||| |||| | ||||| |||| || | Sbjct 798 GCTGCGGTATGGATTCTATGCCTTGTATGGAGCCACGGCTAGTAATAATTTTATTTTTCA 857 Query 79004 TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 79063 | || |||| ||| || ||| || | | | | || | ||| |||| || |||| Sbjct 858 TGTCATCATCCCACAAACCCAACTCAGTGAGATCGCGCAGCAAATGATGATTTACAACTT 917 Query 79064 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATT 79123 ||||||| ||||| | ||| | || ||||| || ||| || || ||||| | || | Sbjct 918 GAAATTCGCCAGAGAGTACGCGACGTGTGTAGATGTTAGAAGTGTAGGGTTCGAATGACT 977 Query 79124 CATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTAT 79183 ||||||| |||| ||||| |||||||| || || ||||||||||| | || | || Sbjct 978 CATTATTGCCCATGATTTGCGCAGTTGAAGCGGTGGGCATAGGTGCAAGCAGGAGGGAAT 1037 Query 79184 TTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTC---CCAATCCCAAAGATCAG 79240 | |||| ||| | | | ||||| || || | |||| ||| | ||| || |||| Sbjct 1038 TCCTAACACCATGCTGTTTAATTTTCTCCTTCA---ATTCTGTCCAGTTCCAGAGCTCAG 1094 Query 79241 ACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGT 79300 || || ||| | |||||||||||||| || || ||| | | ||| | Sbjct 1095 TGGGCTTCTTATCCCACATGTCATATTGTAGAATTCCCTTGCTAACTGGACAGCCTTCAT 1154 Query 79301 ATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAAT 79360 | |||||||| | || | || || || ||||||||||| || |||||||| || |||| Sbjct 1155 AAGTTTCATAGGTACCGTATTTCTCAGCCAATTCACAACTAGCTTCTAATGCACCATAAT 1214 Query 79361 AAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAAT 79420 ||||||||||||||| || | ||| | | ||||| | ||| || | ||||| Sbjct 1215 AAATGGTTTCGAAAACCTGTTGATTTAAAAGGAATGCTTGTTCGCTTTCGTACGGATAGC 1274 Query 79421 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 79480 | || |||| |||||||| || ||||| || || || ||||| || | ||||| Sbjct 1275 GCATAAGTATAAGAGCGTCTGCAAAACCTTGTACGCCGATCCCGATTGGACGGTGTCTAA 1334 Query 79481 TATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA- 79539 || || ||| || || || | || || | ||| || || || |||||||| | | Sbjct 1335 AGTTTGATTTTTTTGCCTCGGGCAATGGGTAGTGATTTATTTCAATGATTTTATTCAAAT 1394 Query 79540 TTCCTGACTATTACTTTGACCACATCCTTTA---GTTTGAGAAAATCAAATCGTCCATCT 79596 ||| || | | |||| || ||||| | ||| || | | | | | || | Sbjct 1395 TTCGTGTC-ACAGTTTTGGTGACTTCCTTGAGCCGTTGGAAATCGTAAGTTTTTTCAGGT 1453 Query 79597 ATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 79656 | |||||||||||||| |||| ||||| | || || || || ||||||| || | Sbjct 1454 GTGACAAACATGTTCAAAGCGATTGATGCTAAGTTGCATACAGCCACCTCATCAGGTGCA 1513 Query 79657 GCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGA 79716 | ||||| | ||||||||||| || || || || |||||||| || | |||||| ||| Sbjct 1514 GAATATTCGACAATTTCAGTGCATAGATTGCTGCATTTAATGGTGCCAATATTTTGCTGA 1573 Query 79717 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGA 79776 ||||| ||| | ||||| |||||||| || | || | || ||||| || || | ||| Sbjct 1574 TTACTTTTTCTATTACAGGCATCCTTGTACAACATATAAGGTGTACCGGTCTCCACCTGG 1633 Query 79777 GATTCTATAATCGCTTTCCAGACGAC-TCGAGCCTTTATTATAGACTT-GTATCTCTT-- 79832 ||||| || || || ||| | ||| | |||| | | | | ||| || | | | Sbjct 1634 GATTCAATGATGGCGAACCA-AAGACTTTGAGC---TTTCACCGTCTTATTAGCGCGTCC 1689 Query 79833 TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCC 79892 ||| |||| || | |||||||||| |||||| || || |||||||| || | ||| || Sbjct 1690 TTCCTTTTCATACTTTGTATATAATTTTTCGAATTCTTCGCCCCAAACCTCATGTAAGCC 1749 Query 79893 AGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAA 79952 |||||||| | ||||||||||| ||||||||||| | | | | || |||| ||| || Sbjct 1750 AGGACATTTATGTGGACACATCAATGACCACTCTCCGTTAGCTTCCACACGTTCCATGAA 1809 Query 79953 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 80012 | ||| || ||||| | ||| ||||| |||||||| || ||||| || ||||| || Sbjct 1810 TAAATCTGGTATCCACAAAGCATAAAATAAATCTCTGGCTCGGTGCTCTTCTTTTCCAGT 1869 Query 80013 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 80072 |||||| || | ||| | ||| | | |||||| | |||||| ||||||||||| ||||| Sbjct 1870 ATTCTTCTTCAAATCCAAAAACTCAAAAATATCTGCATGCCATGGTTCCAAGTAAATGGC 1929 Query 80073 CATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 80132 | | || || || ||| || |||||||||| ||| | || |||||| | || Sbjct 1930 AAAGGCGCCAGGCCGCTTGCCACCACCCTGATCTACGTAACGTGCAACGTTATTGAATAC 1989 Query 80133 TCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACT 80192 | ||||||||| | | |||||| || || ||||| || || | ||| | || | Sbjct 1990 CCGCAACATTGGTACCAAACCATTTGAAGTGCCATTTGTGCCCGCGATTGCTGTGCCCTT 2049 Query 80193 GGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 80250 || || || | | ||| ||| || || || || || || || ||||| || Sbjct 2050 TGCTCGTATGCAATGGACATT--TAGTCCAATGCCACCAGCAGACTTGGAAATTAAAGCA 2107 Query 80251 CATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAA 80310 ||| | | | | | || || || ||| |||| || ||| | | ||| ||| Sbjct 2108 CATTGGTGGGCAGATGTAAATATACCATCAATGGAATCACCAGCCATAGTCAATAGGAAA 2167 Query 80311 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 80370 ||| |||| ||| | | | ||| | ||| ||| | || ||||| || || || Sbjct 2168 CAGGATGACAATTGCGGTTGGCGAGTGGCAGCAGCAAAGAGTGTTGGAGAGGCATGTGTG 2227 Query 80371 AACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGA 80430 || | ||| || || | || || || |||||||| | || ||||| |||| Sbjct 2228 AAATAGCGTTCCGAAAGCAAGTTATAAGTTTCAATAGCGGCATCAATATCTTCACCATGA 2287 Query 80431 ATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATT 80490 || || | | |||||||||||||||||||| || | |||||| || ||| ||| | Sbjct 2288 ATACCAATGGAAACACGCATTAACATGTGCTGCGGACGTTCAACAATTTTGCCATTCAAC 2347 Query 80491 TTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 80550 || | || || || || | ||||| ||||||||||| ||||| ||| || || Sbjct 2348 TTGAGTAAATAGGAACGCTCAAGTGTTTTGAAACCAAAATAATTGTAACCAAAATCACGG 2407 Query 80551 TCGTAAATAATAACCGAGTT 80570 || || || ||| |||| || Sbjct 2408 TCATATATTATAGCCGAATT 2427 >seq22 Length=933496 Score = 253 bits (280), Expect = 3e-62 Identities = 485/709 (68%), Gaps = 7/709 (1%) Strand=Plus/Minus Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847 ||| | ||| || |||||||| ||||| ||| | || |||||||| || || | Sbjct 329805 CAAGCGATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATCAA 329746 Query 49848 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 49907 || || || | || |||| | |||||||||||||| || || || | || || Sbjct 329745 ATTCACAGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGCAATGAT 329686 Query 49908 AGATCTAA--CGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCG 49965 ||| |||| || ||| || || | | |||| ||||||| || || Sbjct 329685 TTCAATAATACGGTCCCT--ACTTGGCTTCTGAATGAGGTGTTGGAACATCAGGCAAGCA 329628 Query 49966 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 50025 |||||||| || | || ||||| || |||||| || || || || || | || ||| Sbjct 329627 AAATCGCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCAGGC 329568 Query 50026 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCT 50085 |||||||| || || || |||||||| || || ||||| ||| |||||| || ||| Sbjct 329567 ATTAGGCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATGCCT 329508 Query 50086 TCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC-GCTGTC-ATGTA-TCCAC 50142 || || |||||||| || | | | || ||| | |||| | | || ||| | ||||| Sbjct 329507 TCAACCGCGGCAAATGCTATTATACGTTCGCCAAAGTTGGCCGATTTCGATGAAATCCAC 329448 Query 50143 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 50202 | |||||||| ||||| || ||| ||||||||| || || ||||| || | Sbjct 329447 GCCAGTGCCCAATCAGCCTTGCGCTTAACAGCAGGCATCGTCTCAATAGCATTGAACAAG 329388 Query 50203 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 50262 || | ||| || | ||| |||| ||| ||||| || || | || |||||||| ||| Sbjct 329387 TAATCCCTTTGCTTGCCATCCTTAATATATGTATCAATTAATATGCTGTACATTTCAGAA 329328 Query 50263 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACT 50322 || | || || ||||| || |||||||| ||||| || | ||||| || || || ||| Sbjct 329327 TGCACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGATTTGAACT 329268 Query 50323 TCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 50382 ||| | || |||||| |||| ||||||||||| || || || ||| ||||| || Sbjct 329267 TCTTGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGGCAAAGAAT 329208 Query 50383 GCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATA 50442 ||||| || || || ||||| ||| ||| || || |||||||| ||| Sbjct 329207 GCCAAAACGTGCGAAATGAAATGGCGTTCATTGTCGGTGAGACGCGCCCAATCATCCATA 329148 Query 50443 TCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 ||||| || | || || |||||||| ||||| || ||||| ||||||| Sbjct 329147 TCTTTGGAAAGGTCAACCTCTTCCACCGTCCAGAAGGATGCTTCTGCCT 329099 >seq40302 Length=2817 Score = 116 bits (128), Expect = 5e-21 Identities = 286/434 (66%), Gaps = 6/434 (1%) Strand=Plus/Plus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| || || ||||||||||| |||||||| | || || || || ||| || || || Sbjct 2231 ACAGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATCAGCTCATTGCTGAAGGTCAG 2290 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAA 50078 || ||||| ||||| ||||| || |||||||| ||| ||||| || || ||||| Sbjct 2291 GCCCGGCATCAGGCCGCGCTTCTTCAGCCAAAAGATGCTGGCAAAGGAGCCGCTGAAGAA 2350 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGT------C 50132 ||| || || || ||||| ||||| || || | ||| || | |||||| || | Sbjct 2351 GATGCCCTCCACGGCGGCGAAGGCGACGAGGCGCTCGGCAAAGGTGGCGCCGTTTTCGGC 2410 Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 |||| ||||| | |||||||| || || |||||||| | ||||| Sbjct 2411 GGCCGTCCAGGCCATGGCCCACTTCGCCTTCTTCGCGACGCAGGGCATCGTCTGGATGGC 2470 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 || ||||| || | | | || | | || || | ||||| || || Sbjct 2471 GTTGAAGAGGTACTCGCGCTGGACGCGGTCGCTGATGTAGGTGTTGATCAGCAGGGAGTA 2530 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 ||| ||||| || | ||| || ||||| ||||| || |||||||| || | |||||||| Sbjct 2531 CATCTCCGAGTGGACGTTCTCGATGGCAATCTGGAAGCCGTAGAAGCAACGGGCCTCGGT 2590 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 | ||| || || || || || | || ||||| || || ||||| ||||| Sbjct 2591 GACGGTCACCTCGCGGATGAAGCGCTCCGCGAGGTTCTCATTGACGATGCCGTCGCTGGC 2650 Query 50373 TGCAAAAAACGCCA 50386 || || || |||| Sbjct 2651 GGCGAAGAAGGCCA 2664 >seq32170 Length=3971 Score = 95.1 bits (104), Expect = 2e-14 Identities = 261/396 (66%), Gaps = 8/396 (2%) Strand=Plus/Minus Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950 || || || |||| || ||||||| |||||| | || || ||| || || |||||| Sbjct 3867 CCGGGGCACTCGTGCGGGCACATCAGCGACCAGACGCCGTCCGCCTGGACGCGCTTCATA 3808 Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010 ||||| || || | ||| | || || || || | || | ||||||| || Sbjct 3807 AAGAGGTCCGGCACCCACATGGCGTAGAAGAGGTCGCGGGCACGGAGCTCCTCCGAGCCG 3748 Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070 || ||||| || ||||| ||| | | || || | ||||||||||| | ||| ||| Sbjct 3747 GTGTTCTTGCGCAGGTCGAGAAACTCGAAGATGTCGGCGTGCCACGGTTCGAGGTAGATG 3688 Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130 || | | ||||| || ||||| || ||||| || | ||| | |||||||| || || Sbjct 3687 GCAAACGCCCCCGGGCGCTTGTTCCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGTAG 3628 Query 80131 ACTCTCAACATTGGAATAATACCATTG--GATGTACCATTGGTCCCGGAGATATAGCTTC 80188 || | || ||| || | | |||||| || | || || || ||| ||| ||| | | Sbjct 3627 ACGCGCAGCATCGGCACCAGCCCATTGCTGACG--CCGTTTGTGCCGCTGATGTAGGTGC 3570 Query 80189 CACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 80246 | ||| || || | | | ||| | || || || || ||| || ||||| | Sbjct 3569 CCGCGGCGCGGATGCAGTGCACGTTG--ACGCCAATGCCGCCGGCCGACTTGGAGATGAT 3512 Query 80247 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTAT 80282 ||||| | || | ||| || ||||||||||| || Sbjct 3511 GGCGCACTGCTTCAGCGTGTCGTAGATGCCCTCAAT 3476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717490645538800