Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq13731 607 1e-168
seq22 253 3e-62
seq40302 116 5e-21
seq32170 95.1 2e-14
>seq13731
Length=15303
Score = 607 bits (672), Expect = 1e-168
Identities = 1273/1880 (68%), Gaps = 28/1880 (1%)
Strand=Plus/Plus
Query 78708 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 78767
|||||||| || ||||| || | | | || ||||| ||||||| |||||||||||
Sbjct 559 CTTGTCCACAGTAAATTGTATAGCATTTGCAGCAGGTTTGGTACGTAAGTAGTACATTCC 618
Query 78768 CGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGG 78827
||||||||||| |||| || |||||||| ||| ||||||||| ||| | ||
Sbjct 619 TGTTTTTAGACCCGCTTTCCAGCCATAGAAATGTATAGAAGTTAGTTTGCCATAGTTTGG 678
Query 78828 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 78887
||||| | ||| || || | ||||| ||||| |||||||| ||||||| ||||| ||
Sbjct 679 CTCTGCGACATGTATGTTAAACGATTGGCTTTGGTCGATGAATGCTCCCCGATCTGCTGC 738
Query 78888 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATAT 78946
|||||| || || || | |||||||| | |||||| || | |||| ||| |
Sbjct 739 CATTTTAATTGAAGTTTTAACCGAGATTTCCCATACAGTTTTGTACAGATCGC-GAATGT 797
Query 78947 -CTTCTGGAAGGTTTGTATTC--TGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 79003
|| | | | || || ||| | || ||||| |||| | ||||| |||| || |
Sbjct 798 GCTGCGGTATGGATTCTATGCCTTGTATGGAGCCACGGCTAGTAATAATTTTATTTTTCA 857
Query 79004 TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 79063
| || |||| ||| || ||| || | | | | || | ||| |||| || ||||
Sbjct 858 TGTCATCATCCCACAAACCCAACTCAGTGAGATCGCGCAGCAAATGATGATTTACAACTT 917
Query 79064 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATT 79123
||||||| ||||| | ||| | || ||||| || ||| || || ||||| | || |
Sbjct 918 GAAATTCGCCAGAGAGTACGCGACGTGTGTAGATGTTAGAAGTGTAGGGTTCGAATGACT 977
Query 79124 CATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTAT 79183
||||||| |||| ||||| |||||||| || || ||||||||||| | || | ||
Sbjct 978 CATTATTGCCCATGATTTGCGCAGTTGAAGCGGTGGGCATAGGTGCAAGCAGGAGGGAAT 1037
Query 79184 TTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTC---CCAATCCCAAAGATCAG 79240
| |||| ||| | | | ||||| || || | |||| ||| | ||| || ||||
Sbjct 1038 TCCTAACACCATGCTGTTTAATTTTCTCCTTCA---ATTCTGTCCAGTTCCAGAGCTCAG 1094
Query 79241 ACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGT 79300
|| || ||| | |||||||||||||| || || ||| | | ||| |
Sbjct 1095 TGGGCTTCTTATCCCACATGTCATATTGTAGAATTCCCTTGCTAACTGGACAGCCTTCAT 1154
Query 79301 ATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAAT 79360
| |||||||| | || | || || || ||||||||||| || |||||||| || ||||
Sbjct 1155 AAGTTTCATAGGTACCGTATTTCTCAGCCAATTCACAACTAGCTTCTAATGCACCATAAT 1214
Query 79361 AAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAAT 79420
||||||||||||||| || | ||| | | ||||| | ||| || | |||||
Sbjct 1215 AAATGGTTTCGAAAACCTGTTGATTTAAAAGGAATGCTTGTTCGCTTTCGTACGGATAGC 1274
Query 79421 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 79480
| || |||| |||||||| || ||||| || || || ||||| || | |||||
Sbjct 1275 GCATAAGTATAAGAGCGTCTGCAAAACCTTGTACGCCGATCCCGATTGGACGGTGTCTAA 1334
Query 79481 TATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA- 79539
|| || ||| || || || | || || | ||| || || || |||||||| | |
Sbjct 1335 AGTTTGATTTTTTTGCCTCGGGCAATGGGTAGTGATTTATTTCAATGATTTTATTCAAAT 1394
Query 79540 TTCCTGACTATTACTTTGACCACATCCTTTA---GTTTGAGAAAATCAAATCGTCCATCT 79596
||| || | | |||| || ||||| | ||| || | | | | | || |
Sbjct 1395 TTCGTGTC-ACAGTTTTGGTGACTTCCTTGAGCCGTTGGAAATCGTAAGTTTTTTCAGGT 1453
Query 79597 ATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 79656
| |||||||||||||| |||| ||||| | || || || || ||||||| || |
Sbjct 1454 GTGACAAACATGTTCAAAGCGATTGATGCTAAGTTGCATACAGCCACCTCATCAGGTGCA 1513
Query 79657 GCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGA 79716
| ||||| | ||||||||||| || || || || |||||||| || | |||||| |||
Sbjct 1514 GAATATTCGACAATTTCAGTGCATAGATTGCTGCATTTAATGGTGCCAATATTTTGCTGA 1573
Query 79717 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGA 79776
||||| ||| | ||||| |||||||| || | || | || ||||| || || | |||
Sbjct 1574 TTACTTTTTCTATTACAGGCATCCTTGTACAACATATAAGGTGTACCGGTCTCCACCTGG 1633
Query 79777 GATTCTATAATCGCTTTCCAGACGAC-TCGAGCCTTTATTATAGACTT-GTATCTCTT-- 79832
||||| || || || ||| | ||| | |||| | | | | ||| || | | |
Sbjct 1634 GATTCAATGATGGCGAACCA-AAGACTTTGAGC---TTTCACCGTCTTATTAGCGCGTCC 1689
Query 79833 TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCC 79892
||| |||| || | |||||||||| |||||| || || |||||||| || | ||| ||
Sbjct 1690 TTCCTTTTCATACTTTGTATATAATTTTTCGAATTCTTCGCCCCAAACCTCATGTAAGCC 1749
Query 79893 AGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAA 79952
|||||||| | ||||||||||| ||||||||||| | | | | || |||| ||| ||
Sbjct 1750 AGGACATTTATGTGGACACATCAATGACCACTCTCCGTTAGCTTCCACACGTTCCATGAA 1809
Query 79953 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 80012
| ||| || ||||| | ||| ||||| |||||||| || ||||| || ||||| ||
Sbjct 1810 TAAATCTGGTATCCACAAAGCATAAAATAAATCTCTGGCTCGGTGCTCTTCTTTTCCAGT 1869
Query 80013 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 80072
|||||| || | ||| | ||| | | |||||| | |||||| ||||||||||| |||||
Sbjct 1870 ATTCTTCTTCAAATCCAAAAACTCAAAAATATCTGCATGCCATGGTTCCAAGTAAATGGC 1929
Query 80073 CATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 80132
| | || || || ||| || |||||||||| ||| | || |||||| | ||
Sbjct 1930 AAAGGCGCCAGGCCGCTTGCCACCACCCTGATCTACGTAACGTGCAACGTTATTGAATAC 1989
Query 80133 TCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACT 80192
| ||||||||| | | |||||| || || ||||| || || | ||| | || |
Sbjct 1990 CCGCAACATTGGTACCAAACCATTTGAAGTGCCATTTGTGCCCGCGATTGCTGTGCCCTT 2049
Query 80193 GGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 80250
|| || || | | ||| ||| || || || || || || || ||||| ||
Sbjct 2050 TGCTCGTATGCAATGGACATT--TAGTCCAATGCCACCAGCAGACTTGGAAATTAAAGCA 2107
Query 80251 CATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAA 80310
||| | | | | | || || || ||| |||| || ||| | | ||| |||
Sbjct 2108 CATTGGTGGGCAGATGTAAATATACCATCAATGGAATCACCAGCCATAGTCAATAGGAAA 2167
Query 80311 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 80370
||| |||| ||| | | | ||| | ||| ||| | || ||||| || || ||
Sbjct 2168 CAGGATGACAATTGCGGTTGGCGAGTGGCAGCAGCAAAGAGTGTTGGAGAGGCATGTGTG 2227
Query 80371 AACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGA 80430
|| | ||| || || | || || || |||||||| | || ||||| ||||
Sbjct 2228 AAATAGCGTTCCGAAAGCAAGTTATAAGTTTCAATAGCGGCATCAATATCTTCACCATGA 2287
Query 80431 ATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATT 80490
|| || | | |||||||||||||||||||| || | |||||| || ||| ||| |
Sbjct 2288 ATACCAATGGAAACACGCATTAACATGTGCTGCGGACGTTCAACAATTTTGCCATTCAAC 2347
Query 80491 TTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 80550
|| | || || || || | ||||| ||||||||||| ||||| ||| || ||
Sbjct 2348 TTGAGTAAATAGGAACGCTCAAGTGTTTTGAAACCAAAATAATTGTAACCAAAATCACGG 2407
Query 80551 TCGTAAATAATAACCGAGTT 80570
|| || || ||| |||| ||
Sbjct 2408 TCATATATTATAGCCGAATT 2427
>seq22
Length=933496
Score = 253 bits (280), Expect = 3e-62
Identities = 485/709 (68%), Gaps = 7/709 (1%)
Strand=Plus/Minus
Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847
||| | ||| || |||||||| ||||| ||| | || |||||||| || || |
Sbjct 329805 CAAGCGATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATCAA 329746
Query 49848 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 49907
|| || || | || |||| | |||||||||||||| || || || | || ||
Sbjct 329745 ATTCACAGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGCAATGAT 329686
Query 49908 AGATCTAA--CGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCG 49965
||| |||| || ||| || || | | |||| ||||||| || ||
Sbjct 329685 TTCAATAATACGGTCCCT--ACTTGGCTTCTGAATGAGGTGTTGGAACATCAGGCAAGCA 329628
Query 49966 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 50025
|||||||| || | || ||||| || |||||| || || || || || | || |||
Sbjct 329627 AAATCGCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCAGGC 329568
Query 50026 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCT 50085
|||||||| || || || |||||||| || || ||||| ||| |||||| || |||
Sbjct 329567 ATTAGGCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATGCCT 329508
Query 50086 TCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC-GCTGTC-ATGTA-TCCAC 50142
|| || |||||||| || | | | || ||| | |||| | | || ||| | |||||
Sbjct 329507 TCAACCGCGGCAAATGCTATTATACGTTCGCCAAAGTTGGCCGATTTCGATGAAATCCAC 329448
Query 50143 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 50202
| |||||||| ||||| || ||| ||||||||| || || ||||| || |
Sbjct 329447 GCCAGTGCCCAATCAGCCTTGCGCTTAACAGCAGGCATCGTCTCAATAGCATTGAACAAG 329388
Query 50203 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 50262
|| | ||| || | ||| |||| ||| ||||| || || | || |||||||| |||
Sbjct 329387 TAATCCCTTTGCTTGCCATCCTTAATATATGTATCAATTAATATGCTGTACATTTCAGAA 329328
Query 50263 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACT 50322
|| | || || ||||| || |||||||| ||||| || | ||||| || || || |||
Sbjct 329327 TGCACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGATTTGAACT 329268
Query 50323 TCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 50382
||| | || |||||| |||| ||||||||||| || || || ||| ||||| ||
Sbjct 329267 TCTTGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGGCAAAGAAT 329208
Query 50383 GCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATA 50442
||||| || || || ||||| ||| ||| || || |||||||| |||
Sbjct 329207 GCCAAAACGTGCGAAATGAAATGGCGTTCATTGTCGGTGAGACGCGCCCAATCATCCATA 329148
Query 50443 TCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491
||||| || | || || |||||||| ||||| || ||||| |||||||
Sbjct 329147 TCTTTGGAAAGGTCAACCTCTTCCACCGTCCAGAAGGATGCTTCTGCCT 329099
>seq40302
Length=2817
Score = 116 bits (128), Expect = 5e-21
Identities = 286/434 (66%), Gaps = 6/434 (1%)
Strand=Plus/Plus
Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018
||| || || ||||||||||| |||||||| | || || || || ||| || || ||
Sbjct 2231 ACAGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATCAGCTCATTGCTGAAGGTCAG 2290
Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAA 50078
|| ||||| ||||| ||||| || |||||||| ||| ||||| || || |||||
Sbjct 2291 GCCCGGCATCAGGCCGCGCTTCTTCAGCCAAAAGATGCTGGCAAAGGAGCCGCTGAAGAA 2350
Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGT------C 50132
||| || || || ||||| ||||| || || | ||| || | |||||| || |
Sbjct 2351 GATGCCCTCCACGGCGGCGAAGGCGACGAGGCGCTCGGCAAAGGTGGCGCCGTTTTCGGC 2410
Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192
|||| ||||| | |||||||| || || |||||||| | |||||
Sbjct 2411 GGCCGTCCAGGCCATGGCCCACTTCGCCTTCTTCGCGACGCAGGGCATCGTCTGGATGGC 2470
Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252
|| ||||| || | | | || | | || || | ||||| || ||
Sbjct 2471 GTTGAAGAGGTACTCGCGCTGGACGCGGTCGCTGATGTAGGTGTTGATCAGCAGGGAGTA 2530
Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312
||| ||||| || | ||| || ||||| ||||| || |||||||| || | ||||||||
Sbjct 2531 CATCTCCGAGTGGACGTTCTCGATGGCAATCTGGAAGCCGTAGAAGCAACGGGCCTCGGT 2590
Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372
| ||| || || || || || | || ||||| || || ||||| |||||
Sbjct 2591 GACGGTCACCTCGCGGATGAAGCGCTCCGCGAGGTTCTCATTGACGATGCCGTCGCTGGC 2650
Query 50373 TGCAAAAAACGCCA 50386
|| || || ||||
Sbjct 2651 GGCGAAGAAGGCCA 2664
>seq32170
Length=3971
Score = 95.1 bits (104), Expect = 2e-14
Identities = 261/396 (66%), Gaps = 8/396 (2%)
Strand=Plus/Minus
Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950
|| || || |||| || ||||||| |||||| | || || ||| || || ||||||
Sbjct 3867 CCGGGGCACTCGTGCGGGCACATCAGCGACCAGACGCCGTCCGCCTGGACGCGCTTCATA 3808
Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010
||||| || || | ||| | || || || || | || | ||||||| ||
Sbjct 3807 AAGAGGTCCGGCACCCACATGGCGTAGAAGAGGTCGCGGGCACGGAGCTCCTCCGAGCCG 3748
Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070
|| ||||| || ||||| ||| | | || || | ||||||||||| | ||| |||
Sbjct 3747 GTGTTCTTGCGCAGGTCGAGAAACTCGAAGATGTCGGCGTGCCACGGTTCGAGGTAGATG 3688
Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130
|| | | ||||| || ||||| || ||||| || | ||| | |||||||| || ||
Sbjct 3687 GCAAACGCCCCCGGGCGCTTGTTCCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGTAG 3628
Query 80131 ACTCTCAACATTGGAATAATACCATTG--GATGTACCATTGGTCCCGGAGATATAGCTTC 80188
|| | || ||| || | | |||||| || | || || || ||| ||| ||| | |
Sbjct 3627 ACGCGCAGCATCGGCACCAGCCCATTGCTGACG--CCGTTTGTGCCGCTGATGTAGGTGC 3570
Query 80189 CACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 80246
| ||| || || | | | ||| | || || || || ||| || ||||| |
Sbjct 3569 CCGCGGCGCGGATGCAGTGCACGTTG--ACGCCAATGCCGCCGGCCGACTTGGAGATGAT 3512
Query 80247 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTAT 80282
||||| | || | ||| || ||||||||||| ||
Sbjct 3511 GGCGCACTGCTTCAGCGTGTCGTAGATGCCCTCAAT 3476
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 717490645538800
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