Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq22 176 4e-39
seq59797 102 8e-17
>seq22
Length=933496
Score = 176 bits (194), Expect = 4e-39
Identities = 468/705 (66%), Gaps = 20/705 (3%)
Strand=Plus/Minus
Query 13698 AGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 13757
|| || | ||| || | ||| |||||||| | |||||||| | |||||||| || ||
Sbjct 329807 AGCAAGCGATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATC 329748
Query 13758 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATA 13817
| || ||||| | || ||||| ||||||| ||| || ||||| || |
Sbjct 329747 AAATTCACAGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGC---A 329691
Query 13818 ATAATTGTAATAATC---TCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACAC 13874
|| ||| |||||| || || || | | || |||| || || | ||
Sbjct 329690 ATGATTTCAATAATACGGTCCCTACTTGGCTTCTGAATGAGGTGTTGGAACATCAGGCAA 329631
Query 13875 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13934
|||||||| ||||| | || || || || ||| || || || || ||||| || ||
Sbjct 329630 GCAAAATCGCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCA 329571
Query 13935 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATT 13994
||||| | || ||||| || | |||||| |||| |||||| || |||||| ||
Sbjct 329570 GGCATTAGGCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATG 329511
Query 13995 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATG--CTTTTTTGTTCGATA 14052
|| ||||| || ||||| ||||||| ||||| ||||| | || | ||| | | || |
Sbjct 329510 CCTTCAACCGCGGCAAATGCTATTATACGTTCGCCAAA-GTTGGCCGATTTCGAT-GAAA 329453
Query 14053 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAA 14112
|||| ||||| |||| || |||| | | ||| || ||||||||||| |
Sbjct 329452 TCCACGCCAGTGCCCAATCAGCCTTGCGCTTAACAGCAGGCATCGTCTCAATAGCATTGA 329393
Query 14113 ATAAATATTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14170
| || || ||| | | || | ||| ||| ||||||||||| | || ||| |||||
Sbjct 329392 ACAAGTAATCCCTTTGCTTGCCATCCTT--AATATATGTATCAATTAATATGCTGTACAT 329335
Query 14171 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCA 14230
|||||| || | || ||||| || || ||||| ||||| ||||| | || || |
Sbjct 329334 TTCAGAATGCACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGAT 329275
Query 14231 TTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14290
||| ||||| | || | ||| | || |||||||| || |||||||| || ||
Sbjct 329274 TTGAACTTCTTGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGGC 329215
Query 14291 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT---TGAGTTTTTTCCA 14347
||| |||||||| | || ||| || || || |||||||| |||| |||
Sbjct 329214 AAAGAATGCCAAAACGTGCGAAATGAA--ATGGC-GTTCATTGTCGGTGAGACGCGCCCA 329158
Query 14348 ATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392
||| | ||| || ||||| || || || || || ||||| ||
Sbjct 329157 ATCATCCATATCTTTGGAAAGGTCAACCTCTTCCACCGTCCAGAA 329113
>seq59797
Length=1646
Score = 102 bits (112), Expect = 8e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 13907 AATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATAT 13966
||| | ||| || || ||||| || || |||||||| |||| || || | ||| || ||
Sbjct 1635 AATTAATTCATTAGAGAATGTCAAACCAGGCATCAAACCTCTCTTCTTGAGCCAGAAAAT 1576
Query 13967 TGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTC 14026
| |||||||| || || ||||| || || || || |||||||| |||| || || ||
Sbjct 1575 GGATGCAAATGAACCAGAGAAGAAAATACCTTCTACGGCAGCAAATGCTACTAGTCTCTC 1516
Query 14027 TCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAAT 14086
||||| |||||||| | || ||||| || ||||| |||| ||| |||||
Sbjct 1515 ACCAAATGATGCTTTCTCGTCATTGATCCACTTAACTGCCCAGTCAGCTTTGCGCTTAAT 1456
Query 14087 AAAATCCATTGTTTCAATAGCATTAAATAAATATTC 14122
| || ||||||||||| || || || || ||
Sbjct 1455 GCATGGAATAGTTTCAATAGCGTTGAACAAGTAATC 1420
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479208274678000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |