Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq22 176 4e-39 seq59797 102 8e-17 >seq22 Length=933496 Score = 176 bits (194), Expect = 4e-39 Identities = 468/705 (66%), Gaps = 20/705 (3%) Strand=Plus/Minus Query 13698 AGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 13757 || || | ||| || | ||| |||||||| | |||||||| | |||||||| || || Sbjct 329807 AGCAAGCGATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATC 329748 Query 13758 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATA 13817 | || ||||| | || ||||| ||||||| ||| || ||||| || | Sbjct 329747 AAATTCACAGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGC---A 329691 Query 13818 ATAATTGTAATAATC---TCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACAC 13874 || ||| |||||| || || || | | || |||| || || | || Sbjct 329690 ATGATTTCAATAATACGGTCCCTACTTGGCTTCTGAATGAGGTGTTGGAACATCAGGCAA 329631 Query 13875 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13934 |||||||| ||||| | || || || || ||| || || || || ||||| || || Sbjct 329630 GCAAAATCGCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCA 329571 Query 13935 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATT 13994 ||||| | || ||||| || | |||||| |||| |||||| || |||||| || Sbjct 329570 GGCATTAGGCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATG 329511 Query 13995 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATG--CTTTTTTGTTCGATA 14052 || ||||| || ||||| ||||||| ||||| ||||| | || | ||| | | || | Sbjct 329510 CCTTCAACCGCGGCAAATGCTATTATACGTTCGCCAAA-GTTGGCCGATTTCGAT-GAAA 329453 Query 14053 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAA 14112 |||| ||||| |||| || |||| | | ||| || ||||||||||| | Sbjct 329452 TCCACGCCAGTGCCCAATCAGCCTTGCGCTTAACAGCAGGCATCGTCTCAATAGCATTGA 329393 Query 14113 ATAAATATTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14170 | || || ||| | | || | ||| ||| ||||||||||| | || ||| ||||| Sbjct 329392 ACAAGTAATCCCTTTGCTTGCCATCCTT--AATATATGTATCAATTAATATGCTGTACAT 329335 Query 14171 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCA 14230 |||||| || | || ||||| || || ||||| ||||| ||||| | || || | Sbjct 329334 TTCAGAATGCACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGAT 329275 Query 14231 TTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14290 ||| ||||| | || | ||| | || |||||||| || |||||||| || || Sbjct 329274 TTGAACTTCTTGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGGC 329215 Query 14291 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT---TGAGTTTTTTCCA 14347 ||| |||||||| | || ||| || || || |||||||| |||| ||| Sbjct 329214 AAAGAATGCCAAAACGTGCGAAATGAA--ATGGC-GTTCATTGTCGGTGAGACGCGCCCA 329158 Query 14348 ATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392 ||| | ||| || ||||| || || || || || ||||| || Sbjct 329157 ATCATCCATATCTTTGGAAAGGTCAACCTCTTCCACCGTCCAGAA 329113 >seq59797 Length=1646 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 13907 AATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATAT 13966 ||| | ||| || || ||||| || || |||||||| |||| || || | ||| || || Sbjct 1635 AATTAATTCATTAGAGAATGTCAAACCAGGCATCAAACCTCTCTTCTTGAGCCAGAAAAT 1576 Query 13967 TGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTC 14026 | |||||||| || || ||||| || || || || |||||||| |||| || || || Sbjct 1575 GGATGCAAATGAACCAGAGAAGAAAATACCTTCTACGGCAGCAAATGCTACTAGTCTCTC 1516 Query 14027 TCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAAT 14086 ||||| |||||||| | || ||||| || ||||| |||| ||| ||||| Sbjct 1515 ACCAAATGATGCTTTCTCGTCATTGATCCACTTAACTGCCCAGTCAGCTTTGCGCTTAAT 1456 Query 14087 AAAATCCATTGTTTCAATAGCATTAAATAAATATTC 14122 | || ||||||||||| || || || || || Sbjct 1455 GCATGGAATAGTTTCAATAGCGTTGAACAAGTAATC 1420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479208274678000