Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq22 178 1e-39 >seq22 Length=933496 Score = 178 bits (196), Expect = 1e-39 Identities = 460/695 (66%), Gaps = 16/695 (2%) Strand=Plus/Minus Query 13494 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13553 ||| || | ||| |||||||| | |||||||| | |||||||| || || | || || Sbjct 329799 ATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATCAAATTCAC 329740 Query 13554 AGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTT 13613 ||| | || |||||| ||||||| ||| || ||||| || ||| || | Sbjct 329739 AGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGC---AATGATTTC 329683 Query 13614 AATAAT---GTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13670 |||||| ||| || || | | || |||| || || | || |||||||| Sbjct 329682 AATAATACGGTCCCTACTTGGCTTCTGAATGAGGTGTTGGAACATCAGGCAAGCAAAATC 329623 Query 13671 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13730 ||||| | || || || || ||| || || || || ||||| || || ||||| | Sbjct 329622 GCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCAGGCATTAG 329563 Query 13731 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 13790 || ||||| || | |||||| |||| ||| || || |||||| || || ||||| Sbjct 329562 GCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATGCCTTCAAC 329503 Query 13791 TGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCT 13850 || ||||| ||||||| ||||| ||||| || ||| ||| ||||| Sbjct 329502 CGCGGCAAATGCTATTATACGTTCGCCAAAGTTGGCCGATTTCGATGAAATCCACGCCAG 329443 Query 13851 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTC 13910 ||||| |||| || |||| | | ||| || || || |||||||| || | || Sbjct 329442 TGCCCAATCAGCCTTGCGCTTAACAGCAGGCATCGTCTCAATAGCATTGAACAAGTAATC 329383 Query 13911 CTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 13968 | | | || | ||| ||| ||||||||||| | || ||| ||||||||||| || Sbjct 329382 CCTTTGCTTGCCATCCTT--AATATATGTATCAATTAATATGCTGTACATTTCAGAATGC 329325 Query 13969 ATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCC 14028 | || || || || || ||||| ||||| || || | || |||| ||| || || Sbjct 329324 ACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGATTTGAACTTCT 329265 Query 14029 GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCC 14088 | || | ||| | ||||||||||| ||||||||||| || ||||| |||||| Sbjct 329264 TGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGGCAAAGAATGCC 329205 Query 14089 AATATGTTTTTAATAAAGTATTGCTCTTCATTGT---TGAGTTTTTTCCAATCGGCTAAA 14145 || | || ||| || || || |||||||| |||| |||||| | | | Sbjct 329204 AAAACGTGCGAAATGAA--ATGGC-GTTCATTGTCGGTGAGACGCGCCCAATCATCCATA 329148 Query 14146 TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180 || || ||||| || || || || || ||||| || Sbjct 329147 TCTTTGGAAAGGTCAACCTCTTCCACCGTCCAGAA 329113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478070308858800