Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq22 178 1e-39
>seq22
Length=933496
Score = 178 bits (196), Expect = 1e-39
Identities = 460/695 (66%), Gaps = 16/695 (2%)
Strand=Plus/Minus
Query 13494 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13553
||| || | ||| |||||||| | |||||||| | |||||||| || || | || ||
Sbjct 329799 ATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATCAAATTCAC 329740
Query 13554 AGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTT 13613
||| | || |||||| ||||||| ||| || ||||| || ||| || |
Sbjct 329739 AGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGC---AATGATTTC 329683
Query 13614 AATAAT---GTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13670
|||||| ||| || || | | || |||| || || | || ||||||||
Sbjct 329682 AATAATACGGTCCCTACTTGGCTTCTGAATGAGGTGTTGGAACATCAGGCAAGCAAAATC 329623
Query 13671 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13730
||||| | || || || || ||| || || || || ||||| || || ||||| |
Sbjct 329622 GCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCAGGCATTAG 329563
Query 13731 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 13790
|| ||||| || | |||||| |||| ||| || || |||||| || || |||||
Sbjct 329562 GCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATGCCTTCAAC 329503
Query 13791 TGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCT 13850
|| ||||| ||||||| ||||| ||||| || ||| ||| |||||
Sbjct 329502 CGCGGCAAATGCTATTATACGTTCGCCAAAGTTGGCCGATTTCGATGAAATCCACGCCAG 329443
Query 13851 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTC 13910
||||| |||| || |||| | | ||| || || || |||||||| || | ||
Sbjct 329442 TGCCCAATCAGCCTTGCGCTTAACAGCAGGCATCGTCTCAATAGCATTGAACAAGTAATC 329383
Query 13911 CTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 13968
| | | || | ||| ||| ||||||||||| | || ||| ||||||||||| ||
Sbjct 329382 CCTTTGCTTGCCATCCTT--AATATATGTATCAATTAATATGCTGTACATTTCAGAATGC 329325
Query 13969 ATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCC 14028
| || || || || || ||||| ||||| || || | || |||| ||| || ||
Sbjct 329324 ACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGATTTGAACTTCT 329265
Query 14029 GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCC 14088
| || | ||| | ||||||||||| ||||||||||| || ||||| ||||||
Sbjct 329264 TGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGGCAAAGAATGCC 329205
Query 14089 AATATGTTTTTAATAAAGTATTGCTCTTCATTGT---TGAGTTTTTTCCAATCGGCTAAA 14145
|| | || ||| || || || |||||||| |||| |||||| | | |
Sbjct 329204 AAAACGTGCGAAATGAA--ATGGC-GTTCATTGTCGGTGAGACGCGCCCAATCATCCATA 329148
Query 14146 TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180
|| || ||||| || || || || || ||||| ||
Sbjct 329147 TCTTTGGAAAGGTCAACCTCTTCCACCGTCCAGAA 329113
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478070308858800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |