Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq280 125 5e-24 >seq280 Length=341618 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940 ||||||| || || | | ||||||||||| ||| ||||| || | |||||| |||| Sbjct 104655 CGCCTCCGCGAAGACGAAGCACCAAATGGAGAGTCGATTCCTTCTGAATATTGTAGTCGG 104714 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000 |||| ||||| |||| ||||| ||||| |||||||||||||| ||||||||||| | | Sbjct 104715 ACAAAGTACGGCCGTCTTCCAACTGTTTACCGGCAAAAATCAAACGCTGTTGATCTGGAG 104774 Query 43001 GCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | | |||||| || || ||| |||| || | | | ||||| | ||| | Sbjct 104775 GAATACCTTCCTTATCCTGGATTTTGGCTTTAACATTTTCGATGGTGTCTGACGGCTCAA 104834 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || ||||| ||||| || || ||||| || || ||||| Sbjct 104835 CCTCCAAGGTGATGGTTTTACCGGTCAGTGTCTTCACGAAGATCTGCAT 104883 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||||| || ||||||||| | ||||| || ||||| || || |||| ||| Sbjct 105131 ACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAGGTGCGGCCGTCTTCC 105190 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| ||||| |||||||| || |||||||| | || | |||||||| || Sbjct 105191 AATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCTTGA 105250 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| | ||||| | | | ||||| | ||| || || | || || ||||| Sbjct 105251 ATCTTGGCCTTGACGTTTTCGATGGTGTCTGACGGCTCAACCTCCAAGGTGATGGTTTTA 105310 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || ||||| || ||||| || |||||||| Sbjct 105311 CCAGTTAGGGTCTTCACGAAGATTTGCAT 105339 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | |||| ||| | || ||||||||| | ||||||||||| Sbjct 106480 GCCACCACGTAGACGAAGAACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGA 106539 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || ||| |||| |||||||||||||||||||| || || || || ||||| | || Sbjct 106540 CAAGGTGCGTCCGTCTTCCAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGG 106599 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||| ||||| || ||| |||| || | ||| || ||| | || || Sbjct 106600 AATACCCTCTTTGTCTTGAATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAAC 106659 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || || || | ||| ||||| || ||||||||||| Sbjct 106660 CTCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCATTTT 106710 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | |||| ||| | || ||||||||| | ||||||||||| Sbjct 114726 GCCACCACGTAGACGAAGAACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGA 114785 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || ||| |||| |||||||||||||||||||| || || || || ||||| | || Sbjct 114786 CAAGGTGCGTCCGTCTTCCAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGG 114845 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||| ||||| || ||| |||| || | ||| || ||| | || || Sbjct 114846 AATACCCTCTTTGTCTTGAATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAAC 114905 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || || || | ||| ||||| || ||||||||||| Sbjct 114906 CTCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCATTTT 114956 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||||| || ||||||||| | || ||||||||||| ||||| | || || Sbjct 104903 ACCAAATGGAGGGTAGACTCCTTTTGGATGTTATAATCGGACAAAGTACGGCCATCTTCG 104962 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | || |||||||| || || || ||||||||||| | || | ||||||||| || | Sbjct 104963 AGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCTTTGTCCTGG 105022 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| | || || | | | ||||| | ||| || || | || || ||||| Sbjct 105023 ATCTTGGCCTTAACGTTCTCGATGGTGTCTGACGGCTCAACCTCCAAGGTGATGGTTTTG 105082 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || ||||| || || ||||||||||| Sbjct 105083 CCAGTCAGAGTCTTGACGAAAATTTGCAT 105111 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||| | ||| ||||||||| | ||||| || ||| Sbjct 105797 CCACCACGAAGACGCAGGACCAAATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAC 105856 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || || | ||||||||||| || ||||| ||||| ||||| | || Sbjct 105857 AAGGTGCGGCCATCTTCAAGCTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 105916 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| |||| || | | | ||||| | ||| || Sbjct 105917 ATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCGATGGTGTCTGATGGCTCAACC 105976 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || |||||||| || ||||| || ||||| || |||||||| Sbjct 105977 TCCAAGGTGATAGTTTTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 106023 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||| | ||| ||||||||| | ||||| || ||| Sbjct 114043 CCACCACGAAGACGCAGGACCAAATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAC 114102 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || || | ||||||||||| || ||||| ||||| ||||| | || Sbjct 114103 AAGGTGCGGCCATCTTCAAGCTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 114162 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| |||| || | | | ||||| | ||| || Sbjct 114163 ATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCGATGGTGTCTGATGGCTCAACC 114222 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || |||||||| || ||||| || ||||| || |||||||| Sbjct 114223 TCCAAGGTGATAGTTTTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 114269 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||||| || ||||||||| | ||||| || ||| Sbjct 105341 CCACCACGGAGACGCAGGACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCCGAC 105400 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || |||| || | || || || ||||||||||| || || || || | || Sbjct 105401 AAGGTGCGCCCGTCTTCGAGCTGCTTACCAGCAAAAATCAAACGTTGCTGGTCTGGAGGA 105460 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || ||| | ||||| | ||| |||||| | ||| || Sbjct 105461 ATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTTTCAATGGTGTCGGATGGCTCAACC 105520 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | ||||||||||| || || || || ||||| || ||||||||| Sbjct 105521 TCCAAGGTTATAGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCATT 105568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380966762866860