Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq13731 583 1e-161 seq22 214 2e-50 seq32170 93.3 6e-14 seq59797 91.5 2e-13 >seq13731 Length=15303 Score = 583 bits (646), Expect = 1e-161 Identities = 1262/1878 (67%), Gaps = 24/1878 (1%) Strand=Plus/Plus Query 70791 CTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCC 70850 |||||||| ||||| || || | | | || | ||| ||||||| |||||||| || Sbjct 559 CTTGTCCACAGTAAATTGTATAGCATTTGCAGCAGGTTTGGTACGTAAGTAGTACATTCC 618 Query 70851 TGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGG 70910 |||||||||||| |||| || || ||||| ||| ||||||||| |||| | || Sbjct 619 TGTTTTTAGACCCGCTTTCCAGCCATAGAAATGTATAGAAGTTAGTTTGCCATAGTTTGG 678 Query 70911 ATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 70970 || || | || || || | ||| || ||||| |||||||| ||||||| ||||| || Sbjct 679 CTCTGCGACATGTATGTTAAACGATTGGCTTTGGTCGATGAATGCTCCCCGATCTGCTGC 738 Query 70971 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 71029 |||||| || || || | |||||||| | |||||| || | |||| ||| | Sbjct 739 CATTTTAATTGAAGTTTTAACCGAGATTTCCCATACAGTTTTGTACAGATCGCG-AATGT 797 Query 71030 -CTTCTGGAAGGTTTGTATTC--TGAATGGATCCACCATCTGCAATAATCCTATTTTTGA 71086 || | | | || || ||| | || ||||| |||| | |||||| ||||||| | Sbjct 798 GCTGCGGTATGGATTCTATGCCTTGTATGGAGCCACGGCTAGTAATAATTTTATTTTTCA 857 Query 71087 TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTT 71146 | || |||| ||| || ||| || | | | | || | |||| |||| || |||| Sbjct 858 TGTCATCATCCCACAAACCCAACTCAGTGAGATCGCGCAGCAAATGATGATTTACAACTT 917 Query 71147 GAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACT 71206 ||||||| ||||| | ||| | ||| ||||| || ||| || || ||||| | ||||| Sbjct 918 GAAATTCGCCAGAGAGTACGCGACGTGTGTAGATGTTAGAAGTGTAGGGTTCGAATGACT 977 Query 71207 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTAT 71266 ||||||| |||| ||||| |||||||| || || ||||||||||| | || || || Sbjct 978 CATTATTGCCCATGATTTGCGCAGTTGAAGCGGTGGGCATAGGTGCAAGCAGGAGGGAAT 1037 Query 71267 TTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTC---CCAATTCCAAAGATCCG 71323 | |||| |||||| | ||||| || || | |||| ||| ||||| || || | Sbjct 1038 TCCTAACACCATGCTGTTTAATTTTCTCCTTCA---ATTCTGTCCAGTTCCAGAGCTCAG 1094 Query 71324 ATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCAT 71383 || || || || ||| | | ||| ||| Sbjct 1095 TGGGCTTCTTATCCCACATGTCATATTGTAGAATTCCCTTGCTAACTGGACAGCCTTCAT 1154 Query 71384 ATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAAT 71443 | || || || | || | ||| || || | ||||||||| || |||||||| ||||||| Sbjct 1155 AAGTTTCATAGGTACCGTATTTCTCAGCCAATTCACAACTAGCTTCTAATGCACCATAAT 1214 Query 71444 AAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAAT 71503 ||||||||||||||| || | ||| | | ||||| ||| || | ||||| Sbjct 1215 AAATGGTTTCGAAAACCTGTTGATTTAAAAGGAATGCTTGTTCGCTTTCGTACGGATAGC 1274 Query 71504 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCT 71563 | || |||| |||||||| || ||||| ||||| || ||||| || | |||||| Sbjct 1275 GCATAAGTATAAGAGCGTCTGCAAAACCTTGTACGCCGATCCCGATTGGACGGTGTCTAA 1334 Query 71564 TATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 71623 || || ||| || || || | || || | ||| || || || |||||||| | || Sbjct 1335 AGTTTGATTTTTTTGCCTCGGGCAATGGGTAGTGATTTATTTCAATGATTTTATTCAAAT 1394 Query 71624 TTC-TGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA---TCTCCCATCT 71679 ||| || | | |||| || ||||| || | ||||| | | | || | Sbjct 1395 TTCGTGTC-ACAGTTTTGGTGACTTCCTTGAGCCGTTGGAAATCGTAAGTTTTTTCAGGT 1453 Query 71680 ATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCG 71739 | ||||||| |||||| || | ||||| | || || || || ||||||| || | Sbjct 1454 GTGACAAACATGTTCAAAGCGATTGATGCTAAGTTGCATACAGCCACCTCATCAGGTGCA 1513 Query 71740 GCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 71799 | ||||| | |||||||||||| ||||| || || || ||||| || | |||||| ||| Sbjct 1514 GAATATTCGACAATTTCAGTGCATAGATTGCTGCATTTAATGGTGCCAATATTTTGCTGA 1573 Query 71800 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGA 71859 ||||| ||| | ||||| |||||||| || | ||| | || ||||| || || | ||| Sbjct 1574 TTACTTTTTCTATTACAGGCATCCTTGTACAACATATAAGGTGTACCGGTCTCCACCTGG 1633 Query 71860 GATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATATTCTTGTATC-TCTTTT 71917 ||||| || || || ||| | |||| |||| || | | || || | || || Sbjct 1634 GATTCAATGATGGCGAACCAAA-GACTTTGAGCTTTCACCGTCTTATTAGCGCGTCCTTC 1692 Query 71918 CTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAG 71977 || |||| || | |||||||||| |||||| || || |||||| | | | ||| |||| Sbjct 1693 CT-TTTCATACTTTGTATATAATTTTTCGAATTCTTCGCCCCAAACCTCATGTAAGCCAG 1751 Query 71978 GACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGA 72037 |||||| || ||||||||||||||||||||||| | | | | || |||| ||| || | Sbjct 1752 GACATTTATGTGGACACATCAATGACCACTCTCCGTTAGCTTCCACACGTTCCATGAATA 1811 Query 72038 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTAT 72097 ||| || ||||| | ||| ||||| |||||||| || ||||| || ||||| |||| Sbjct 1812 AATCTGGTATCCACAAAGCATAAAATAAATCTCTGGCTCGGTGCTCTTCTTTTCCAGTAT 1871 Query 72098 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 72157 |||| || | ||| | ||| | | |||||| | |||||| ||||||||||| ||||| | Sbjct 1872 TCTTCTTCAAATCCAAAAACTCAAAAATATCTGCATGCCATGGTTCCAAGTAAATGGCAA 1931 Query 72158 TAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 72217 | || ||||| ||| || |||||||||| ||| | || |||||| | || | Sbjct 1932 AGGCGCCAGGCCGCTTGCCACCACCCTGATCTACGTAACGTGCAACGTTATTGAATACCC 1991 Query 72218 TCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGG 72277 ||||||||| | | |||||| || | ||||| || || | ||| | || | | Sbjct 1992 GCAACATTGGTACCAAACCATTTGAAGTGCCATTTGTGCCCGCGATTGCTGTGCCCTTTG 2051 Query 72278 CACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 72335 | || || | || ||| ||| || || || || || || || ||||| || || Sbjct 2052 CTCGTATGCAATGGACATT--TAGTCCAATGCCACCAGCAGACTTGGAAATTAAAGCACA 2109 Query 72336 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 72395 | | | | | | || || || || |||| | ||| | | ||| ||||| Sbjct 2110 TTGGTGGGCAGATGTAAATATACCATCAATGGAATCACCAGCCATAGTCAATAGGAAACA 2169 Query 72396 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 72455 | |||| ||| | | | ||| | ||| ||| | || ||||| || || || || Sbjct 2170 GGATGACAATTGCGGTTGGCGAGTGGCAGCAGCAAAGAGTGTTGGAGAGGCATGTGTGAA 2229 Query 72456 CCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTAT 72515 | ||| || || | || || || |||||||| | || ||||| ||| || Sbjct 2230 ATAGCGTTCCGAAAGCAAGTTATAAGTTTCAATAGCGGCATCAATATCTTCACCATGAAT 2289 Query 72516 TCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTT 72575 || | | |||||||||||||| ||||| || | |||||| || ||| ||| | || Sbjct 2290 ACCAATGGAAACACGCATTAACATGTGCTGCGGACGTTCAACAATTTTGCCATTCAACTT 2349 Query 72576 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 72635 | || ||||| || | ||||| ||||||||||| ||||| ||| || || || Sbjct 2350 GAGTAAATAGGAACGCTCAAGTGTTTTGAAACCAAAATAATTGTAACCAAAATCACGGTC 2409 Query 72636 GTAAATAATAACCGAATT 72653 || || ||| ||||||| Sbjct 2410 ATATATTATAGCCGAATT 2427 >seq22 Length=933496 Score = 214 bits (236), Expect = 2e-50 Identities = 381/552 (69%), Gaps = 7/552 (1%) Strand=Plus/Minus Query 42050 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCG 42109 |||| ||||||| || || |||||||| || | || || || || ||||| || Sbjct 329648 TGTTGGAACATCAGGCAAGCAAAATCGCAATGTAATCCTTCGTCCCTTGAAATTAGCTCA 329589 Query 42110 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAAT 42169 || || || || | || ||||||||||| || || || |||||||| || || ||||| Sbjct 329588 TTAGAGAATGTCAAACCAGGCATTAGGCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAA 329529 Query 42170 GATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG 42229 ||| |||||| || ||||| || || ||||| || || | | || ||| | | Sbjct 329528 CTGCCACTAAAGAAAATGCCTTCAACCGCGGCAAATGCTATTATACGTTCGCCAAAGTTG 329469 Query 42230 GC--ACTGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 42286 || | | ||| |||||| | |||||||| ||||| || ||| ||||||| Sbjct 329468 GCCGATTTCGATGAAATCCACGCCAGTGCCCAATCAGCCTTGCGCTTAACAGCAGGCATC 329409 Query 42287 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATC 42346 || || || ||||| || | || | ||| || | ||| |||| ||||||||| || Sbjct 329408 GTCTCAATAGCATTGAACAAGTAATCCCTTTGCTTGCCATCCTTAATATATGTATCAATT 329349 Query 42347 AAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 42406 || | || |||||||| ||||| | || || ||||| || |||||||| ||||| || Sbjct 329348 AATATGCTGTACATTTCAGAATGCACATTCTCCATGGCGATTTGAAATCCATAGAAGCAA 329289 Query 42407 CTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATT 42466 | ||||| || | || |||||| | || |||||| |||| ||||| ||||| || Sbjct 329288 CGCGCCTCTGTGATTTGAACTTCTTGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATA 329229 Query 42467 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CCGGTG 42524 || || ||| ||||| || ||||| || || || |||| ||| | ||||| Sbjct 329228 CCATCGGAGGCGGCAAAGAATGCCAAAACGTGCGAAATGAAATGGCGTTCATTGTCGGTG 329169 Query 42525 TTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATG 42584 | |||||||| |||||||| || | || || ||||| |||||||| || | Sbjct 329168 --AGACGCGCCCAATCATCCATATCTTTGGAAAGGTCAACCTCTTCCACCGTCCAGAAGG 329111 Query 42585 ATGCTTCTGCCT 42596 |||||||||||| Sbjct 329110 ATGCTTCTGCCT 329099 >seq32170 Length=3971 Score = 93.3 bits (102), Expect = 6e-14 Identities = 258/394 (65%), Gaps = 4/394 (1%) Strand=Plus/Minus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 || || || || | ||| ||||||| ||||| | || || | | || || |||||| Sbjct 3867 CCGGGGCACTCGTGCGGGCACATCAGCGACCAGACGCCGTCCGCCTGGACGCGCTTCATA 3808 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 ||||| || || | ||| | || || || || | || | ||||||| || Sbjct 3807 AAGAGGTCCGGCACCCACATGGCGTAGAAGAGGTCGCGGGCACGGAGCTCCTCCGAGCCG 3748 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 || ||||| || ||||| ||| | | || || | ||||||||||| | ||| ||| Sbjct 3747 GTGTTCTTGCGCAGGTCGAGAAACTCGAAGATGTCGGCGTGCCACGGTTCGAGGTAGATG 3688 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | ||||| || ||||| || ||||| || | ||| | |||||||| || || Sbjct 3687 GCAAACGCCCCCGGGCGCTTGTTCCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGTAG 3628 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | || ||| || | | |||||| | || || || ||| ||| ||| | || Sbjct 3627 ACGCGCAGCATCGGCACCAGCCCATTGCTGACGCCGTTTGTGCCGCTGATGTAGGTGCCC 3568 Query 72274 CTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331 ||| || || | ||| ||| | || || || || ||| || ||||| | | Sbjct 3567 GCGGCGCGGATGCAGTGCACGTTG--ACGCCAATGCCGCCGGCCGACTTGGAGATGATGG 3510 Query 72332 CGCATCGTTTTAACGTATCATAGATGCCCTCTAT 72365 |||| | || | ||| || ||||||||||| || Sbjct 3509 CGCACTGCTTCAGCGTGTCGTAGATGCCCTCAAT 3476 >seq59797 Length=1646 Score = 91.5 bits (100), Expect = 2e-13 Identities = 185/273 (68%), Gaps = 5/273 (2%) Strand=Plus/Minus Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 || ||||| |||||||| || | || || || || || || || ||||| || Sbjct 1349 TAGGTATCAATCAAAAGTGAGTAAGTCTCGGAGTGTATATTCTCCATCATAATCTGGAAA 1290 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTT 42454 |||||||||||||| || || | | |||||| || | | |||| ||| || || Sbjct 1289 CCGTAGAAACATCTTGCTTCTGCGAGCTGTACCTCGGAGGAGAATCTTTCGAGTAGGTTC 1230 Query 42455 TCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 42514 || || || || |||||| || || || || || |||||||| | || || | || Sbjct 1229 TCATTGACAATACCGTCAGATGCGGCGAAGAATGCTAATACATGACTAATGAAGTGCTTC 1170 Query 42515 TCGTCCGGTGTTAAT----TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTC 42570 || ||| |||| || || | ||| || ||||||| || || | || | |||||| Sbjct 1169 TCATCC-TTGTTTATCTTGTTCTGCCAGTCCGTGATATCCTTCGACAAGTCCATTTCTTC 1111 Query 42571 TACCGTCCAAAATGATGCTTCTGCCTTTTTATA 42603 | | ||||| || || |||||||| || || || Sbjct 1110 TGCAGTCCAGAAAGAAGCTTCTGCTTTCTTGTA 1078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670412104569200