Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq13731 583 1e-161
seq22 214 2e-50
seq32170 93.3 6e-14
seq59797 91.5 2e-13
>seq13731
Length=15303
Score = 583 bits (646), Expect = 1e-161
Identities = 1262/1878 (67%), Gaps = 24/1878 (1%)
Strand=Plus/Plus
Query 70791 CTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCC 70850
|||||||| ||||| || || | | | || | ||| ||||||| |||||||| ||
Sbjct 559 CTTGTCCACAGTAAATTGTATAGCATTTGCAGCAGGTTTGGTACGTAAGTAGTACATTCC 618
Query 70851 TGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGG 70910
|||||||||||| |||| || || ||||| ||| ||||||||| |||| | ||
Sbjct 619 TGTTTTTAGACCCGCTTTCCAGCCATAGAAATGTATAGAAGTTAGTTTGCCATAGTTTGG 678
Query 70911 ATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 70970
|| || | || || || | ||| || ||||| |||||||| ||||||| ||||| ||
Sbjct 679 CTCTGCGACATGTATGTTAAACGATTGGCTTTGGTCGATGAATGCTCCCCGATCTGCTGC 738
Query 70971 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 71029
|||||| || || || | |||||||| | |||||| || | |||| ||| |
Sbjct 739 CATTTTAATTGAAGTTTTAACCGAGATTTCCCATACAGTTTTGTACAGATCGCG-AATGT 797
Query 71030 -CTTCTGGAAGGTTTGTATTC--TGAATGGATCCACCATCTGCAATAATCCTATTTTTGA 71086
|| | | | || || ||| | || ||||| |||| | |||||| ||||||| |
Sbjct 798 GCTGCGGTATGGATTCTATGCCTTGTATGGAGCCACGGCTAGTAATAATTTTATTTTTCA 857
Query 71087 TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTT 71146
| || |||| ||| || ||| || | | | | || | |||| |||| || ||||
Sbjct 858 TGTCATCATCCCACAAACCCAACTCAGTGAGATCGCGCAGCAAATGATGATTTACAACTT 917
Query 71147 GAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACT 71206
||||||| ||||| | ||| | ||| ||||| || ||| || || ||||| | |||||
Sbjct 918 GAAATTCGCCAGAGAGTACGCGACGTGTGTAGATGTTAGAAGTGTAGGGTTCGAATGACT 977
Query 71207 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTAT 71266
||||||| |||| ||||| |||||||| || || ||||||||||| | || || ||
Sbjct 978 CATTATTGCCCATGATTTGCGCAGTTGAAGCGGTGGGCATAGGTGCAAGCAGGAGGGAAT 1037
Query 71267 TTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTC---CCAATTCCAAAGATCCG 71323
| |||| |||||| | ||||| || || | |||| ||| ||||| || || |
Sbjct 1038 TCCTAACACCATGCTGTTTAATTTTCTCCTTCA---ATTCTGTCCAGTTCCAGAGCTCAG 1094
Query 71324 ATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCAT 71383
|| || || || ||| | | ||| |||
Sbjct 1095 TGGGCTTCTTATCCCACATGTCATATTGTAGAATTCCCTTGCTAACTGGACAGCCTTCAT 1154
Query 71384 ATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAAT 71443
| || || || | || | ||| || || | ||||||||| || |||||||| |||||||
Sbjct 1155 AAGTTTCATAGGTACCGTATTTCTCAGCCAATTCACAACTAGCTTCTAATGCACCATAAT 1214
Query 71444 AAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAAT 71503
||||||||||||||| || | ||| | | ||||| ||| || | |||||
Sbjct 1215 AAATGGTTTCGAAAACCTGTTGATTTAAAAGGAATGCTTGTTCGCTTTCGTACGGATAGC 1274
Query 71504 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCT 71563
| || |||| |||||||| || ||||| ||||| || ||||| || | ||||||
Sbjct 1275 GCATAAGTATAAGAGCGTCTGCAAAACCTTGTACGCCGATCCCGATTGGACGGTGTCTAA 1334
Query 71564 TATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 71623
|| || ||| || || || | || || | ||| || || || |||||||| | ||
Sbjct 1335 AGTTTGATTTTTTTGCCTCGGGCAATGGGTAGTGATTTATTTCAATGATTTTATTCAAAT 1394
Query 71624 TTC-TGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA---TCTCCCATCT 71679
||| || | | |||| || ||||| || | ||||| | | | || |
Sbjct 1395 TTCGTGTC-ACAGTTTTGGTGACTTCCTTGAGCCGTTGGAAATCGTAAGTTTTTTCAGGT 1453
Query 71680 ATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCG 71739
| ||||||| |||||| || | ||||| | || || || || ||||||| || |
Sbjct 1454 GTGACAAACATGTTCAAAGCGATTGATGCTAAGTTGCATACAGCCACCTCATCAGGTGCA 1513
Query 71740 GCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 71799
| ||||| | |||||||||||| ||||| || || || ||||| || | |||||| |||
Sbjct 1514 GAATATTCGACAATTTCAGTGCATAGATTGCTGCATTTAATGGTGCCAATATTTTGCTGA 1573
Query 71800 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGA 71859
||||| ||| | ||||| |||||||| || | ||| | || ||||| || || | |||
Sbjct 1574 TTACTTTTTCTATTACAGGCATCCTTGTACAACATATAAGGTGTACCGGTCTCCACCTGG 1633
Query 71860 GATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATATTCTTGTATC-TCTTTT 71917
||||| || || || ||| | |||| |||| || | | || || | || ||
Sbjct 1634 GATTCAATGATGGCGAACCAAA-GACTTTGAGCTTTCACCGTCTTATTAGCGCGTCCTTC 1692
Query 71918 CTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAG 71977
|| |||| || | |||||||||| |||||| || || |||||| | | | ||| ||||
Sbjct 1693 CT-TTTCATACTTTGTATATAATTTTTCGAATTCTTCGCCCCAAACCTCATGTAAGCCAG 1751
Query 71978 GACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGA 72037
|||||| || ||||||||||||||||||||||| | | | | || |||| ||| || |
Sbjct 1752 GACATTTATGTGGACACATCAATGACCACTCTCCGTTAGCTTCCACACGTTCCATGAATA 1811
Query 72038 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTAT 72097
||| || ||||| | ||| ||||| |||||||| || ||||| || ||||| ||||
Sbjct 1812 AATCTGGTATCCACAAAGCATAAAATAAATCTCTGGCTCGGTGCTCTTCTTTTCCAGTAT 1871
Query 72098 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 72157
|||| || | ||| | ||| | | |||||| | |||||| ||||||||||| ||||| |
Sbjct 1872 TCTTCTTCAAATCCAAAAACTCAAAAATATCTGCATGCCATGGTTCCAAGTAAATGGCAA 1931
Query 72158 TAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 72217
| || ||||| ||| || |||||||||| ||| | || |||||| | || |
Sbjct 1932 AGGCGCCAGGCCGCTTGCCACCACCCTGATCTACGTAACGTGCAACGTTATTGAATACCC 1991
Query 72218 TCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGG 72277
||||||||| | | |||||| || | ||||| || || | ||| | || | |
Sbjct 1992 GCAACATTGGTACCAAACCATTTGAAGTGCCATTTGTGCCCGCGATTGCTGTGCCCTTTG 2051
Query 72278 CACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 72335
| || || | || ||| ||| || || || || || || || ||||| || ||
Sbjct 2052 CTCGTATGCAATGGACATT--TAGTCCAATGCCACCAGCAGACTTGGAAATTAAAGCACA 2109
Query 72336 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 72395
| | | | | | || || || || |||| | ||| | | ||| |||||
Sbjct 2110 TTGGTGGGCAGATGTAAATATACCATCAATGGAATCACCAGCCATAGTCAATAGGAAACA 2169
Query 72396 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 72455
| |||| ||| | | | ||| | ||| ||| | || ||||| || || || ||
Sbjct 2170 GGATGACAATTGCGGTTGGCGAGTGGCAGCAGCAAAGAGTGTTGGAGAGGCATGTGTGAA 2229
Query 72456 CCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTAT 72515
| ||| || || | || || || |||||||| | || ||||| ||| ||
Sbjct 2230 ATAGCGTTCCGAAAGCAAGTTATAAGTTTCAATAGCGGCATCAATATCTTCACCATGAAT 2289
Query 72516 TCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTT 72575
|| | | |||||||||||||| ||||| || | |||||| || ||| ||| | ||
Sbjct 2290 ACCAATGGAAACACGCATTAACATGTGCTGCGGACGTTCAACAATTTTGCCATTCAACTT 2349
Query 72576 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 72635
| || ||||| || | ||||| ||||||||||| ||||| ||| || || ||
Sbjct 2350 GAGTAAATAGGAACGCTCAAGTGTTTTGAAACCAAAATAATTGTAACCAAAATCACGGTC 2409
Query 72636 GTAAATAATAACCGAATT 72653
|| || ||| |||||||
Sbjct 2410 ATATATTATAGCCGAATT 2427
>seq22
Length=933496
Score = 214 bits (236), Expect = 2e-50
Identities = 381/552 (69%), Gaps = 7/552 (1%)
Strand=Plus/Minus
Query 42050 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCG 42109
|||| ||||||| || || |||||||| || | || || || || ||||| ||
Sbjct 329648 TGTTGGAACATCAGGCAAGCAAAATCGCAATGTAATCCTTCGTCCCTTGAAATTAGCTCA 329589
Query 42110 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAAT 42169
|| || || || | || ||||||||||| || || || |||||||| || || |||||
Sbjct 329588 TTAGAGAATGTCAAACCAGGCATTAGGCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAA 329529
Query 42170 GATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG 42229
||| |||||| || ||||| || || ||||| || || | | || ||| | |
Sbjct 329528 CTGCCACTAAAGAAAATGCCTTCAACCGCGGCAAATGCTATTATACGTTCGCCAAAGTTG 329469
Query 42230 GC--ACTGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 42286
|| | | ||| |||||| | |||||||| ||||| || ||| |||||||
Sbjct 329468 GCCGATTTCGATGAAATCCACGCCAGTGCCCAATCAGCCTTGCGCTTAACAGCAGGCATC 329409
Query 42287 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATC 42346
|| || || ||||| || | || | ||| || | ||| |||| ||||||||| ||
Sbjct 329408 GTCTCAATAGCATTGAACAAGTAATCCCTTTGCTTGCCATCCTTAATATATGTATCAATT 329349
Query 42347 AAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 42406
|| | || |||||||| ||||| | || || ||||| || |||||||| ||||| ||
Sbjct 329348 AATATGCTGTACATTTCAGAATGCACATTCTCCATGGCGATTTGAAATCCATAGAAGCAA 329289
Query 42407 CTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATT 42466
| ||||| || | || |||||| | || |||||| |||| ||||| ||||| ||
Sbjct 329288 CGCGCCTCTGTGATTTGAACTTCTTGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATA 329229
Query 42467 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CCGGTG 42524
|| || ||| ||||| || ||||| || || || |||| ||| | |||||
Sbjct 329228 CCATCGGAGGCGGCAAAGAATGCCAAAACGTGCGAAATGAAATGGCGTTCATTGTCGGTG 329169
Query 42525 TTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATG 42584
| |||||||| |||||||| || | || || ||||| |||||||| || |
Sbjct 329168 --AGACGCGCCCAATCATCCATATCTTTGGAAAGGTCAACCTCTTCCACCGTCCAGAAGG 329111
Query 42585 ATGCTTCTGCCT 42596
||||||||||||
Sbjct 329110 ATGCTTCTGCCT 329099
>seq32170
Length=3971
Score = 93.3 bits (102), Expect = 6e-14
Identities = 258/394 (65%), Gaps = 4/394 (1%)
Strand=Plus/Minus
Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033
|| || || || | ||| ||||||| ||||| | || || | | || || ||||||
Sbjct 3867 CCGGGGCACTCGTGCGGGCACATCAGCGACCAGACGCCGTCCGCCTGGACGCGCTTCATA 3808
Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093
||||| || || | ||| | || || || || | || | ||||||| ||
Sbjct 3807 AAGAGGTCCGGCACCCACATGGCGTAGAAGAGGTCGCGGGCACGGAGCTCCTCCGAGCCG 3748
Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153
|| ||||| || ||||| ||| | | || || | ||||||||||| | ||| |||
Sbjct 3747 GTGTTCTTGCGCAGGTCGAGAAACTCGAAGATGTCGGCGTGCCACGGTTCGAGGTAGATG 3688
Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213
|| | | ||||| || ||||| || ||||| || | ||| | |||||||| || ||
Sbjct 3687 GCAAACGCCCCCGGGCGCTTGTTCCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGTAG 3628
Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273
|| | || ||| || | | |||||| | || || || ||| ||| ||| | ||
Sbjct 3627 ACGCGCAGCATCGGCACCAGCCCATTGCTGACGCCGTTTGTGCCGCTGATGTAGGTGCCC 3568
Query 72274 CTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331
||| || || | ||| ||| | || || || || ||| || ||||| | |
Sbjct 3567 GCGGCGCGGATGCAGTGCACGTTG--ACGCCAATGCCGCCGGCCGACTTGGAGATGATGG 3510
Query 72332 CGCATCGTTTTAACGTATCATAGATGCCCTCTAT 72365
|||| | || | ||| || ||||||||||| ||
Sbjct 3509 CGCACTGCTTCAGCGTGTCGTAGATGCCCTCAAT 3476
>seq59797
Length=1646
Score = 91.5 bits (100), Expect = 2e-13
Identities = 185/273 (68%), Gaps = 5/273 (2%)
Strand=Plus/Minus
Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394
|| ||||| |||||||| || | || || || || || || || ||||| ||
Sbjct 1349 TAGGTATCAATCAAAAGTGAGTAAGTCTCGGAGTGTATATTCTCCATCATAATCTGGAAA 1290
Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTT 42454
|||||||||||||| || || | | |||||| || | | |||| ||| || ||
Sbjct 1289 CCGTAGAAACATCTTGCTTCTGCGAGCTGTACCTCGGAGGAGAATCTTTCGAGTAGGTTC 1230
Query 42455 TCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 42514
|| || || || |||||| || || || || || |||||||| | || || | ||
Sbjct 1229 TCATTGACAATACCGTCAGATGCGGCGAAGAATGCTAATACATGACTAATGAAGTGCTTC 1170
Query 42515 TCGTCCGGTGTTAAT----TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTC 42570
|| ||| |||| || || | ||| || ||||||| || || | || | ||||||
Sbjct 1169 TCATCC-TTGTTTATCTTGTTCTGCCAGTCCGTGATATCCTTCGACAAGTCCATTTCTTC 1111
Query 42571 TACCGTCCAAAATGATGCTTCTGCCTTTTTATA 42603
| | ||||| || || |||||||| || || ||
Sbjct 1110 TGCAGTCCAGAAAGAAGCTTCTGCTTTCTTGTA 1078
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670412104569200
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