Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq280 118 8e-22 seq21746 104 2e-17 seq322 84.2 2e-11 >seq280 Length=341618 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| || || || ||||| |||||||||||| | | | ||||||| Sbjct 106498 AACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTC 106557 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||||||||||| || | || |||||||| || || |||||| || |||||||| Sbjct 106558 CAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGGAATACCCTCTTTGTCTTG 106617 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| ||| |||||| | || || |||||| ||| || || | || ||||| || Sbjct 106618 AATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTT 106677 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15371 || |||| ||| || || || |||||||| ||||||| Sbjct 106678 GCCAGTCAAAGTCTTCACGAAGATTTGCATTTTTGAAA 106715 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| || || || ||||| |||||||||||| | | | ||||||| Sbjct 114744 AACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTC 114803 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||||||||||| || | || |||||||| || || |||||| || |||||||| Sbjct 114804 CAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGGAATACCCTCTTTGTCTTG 114863 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| ||| |||||| | || || |||||| ||| || || | || ||||| || Sbjct 114864 AATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTT 114923 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15371 || |||| ||| || || || |||||||| ||||||| Sbjct 114924 GCCAGTCAAAGTCTTCACGAAGATTTGCATTTTTGAAA 114961 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| ||||| || || ||||| |||||||| || | | | ||||||| Sbjct 105131 ACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAGGTGCGGCCGTCTTCC 105190 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| || ||| | |||||||||||||| || ||||| |||||||| || | Sbjct 105191 AATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCTTGA 105250 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| || |||| ||||| || || || || ||||| ||||||||| Sbjct 105251 ATCTTGGCCTTGACGTTTTCGATGGTGTCTGACGGCTCAACCTCCAAGGTGATGGTTTTA 105310 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || || ||||||||| Sbjct 105311 CCAGTTAGGGTCTTCACGAAGATTTGCATA 105340 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||||||| ||||| || |||||||||||||| |||||| | | | | ||||| Sbjct 106043 ACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCGGACAAGGTGCGGCCATCTTCG 106102 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||| ||| | || ||||| ||||| || ||| || ||||| || || Sbjct 106103 AGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCCTTATCTTGG 106162 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| || ||| |||| || |||||| | ||| || || | || |||||||| Sbjct 106163 ATTTTGGCTTTCACATTTTCGATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTTTTG 106222 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| ||||| ||||| ||||||||| Sbjct 106223 CCAGTCAATGTTTTAACAAATATTTGCATA 106252 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||||||| ||||| || |||||||||||||| |||||| | | | | ||||| Sbjct 114289 ACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCGGACAAGGTGCGGCCATCTTCG 114348 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||| ||| | || ||||| ||||| || ||| || ||||| || || Sbjct 114349 AGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCCTTATCTTGG 114408 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| || ||| |||| || |||||| | ||| || || | || |||||||| Sbjct 114409 ATTTTGGCTTTCACATTTTCGATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTTTTG 114468 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| ||||| ||||| ||||||||| Sbjct 114469 CCAGTCAATGTTTTAACAAATATTTGCATA 114498 Score = 109 bits (120), Expect = 4e-19 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209 ||||||||||| | || || || || || || ||||| || | ||| || | | Sbjct 106268 AAAACTAAATGCAATGTAGATTCCTTCTGAATATTGTAGTCAG--ACAATGTGCGTCCAT 106325 Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269 | || || || ||||||||| | || ||||||||||| || ||| |||||||| || | Sbjct 106326 CCTCCAACTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGTGGGATTCCTTCCTTAT 106385 Query 15270 CACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 | |||||| ||| || ||| | || ||||||||| | || || || || || ||| Sbjct 106386 CCTGAATTTTAGCT-TTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATG 106444 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||||| |||| |||||| || ||||| ||||| Sbjct 106445 GTTTTACCCGTCAAAGTTTTGACGAAAATCTGCAT 106479 Score = 109 bits (120), Expect = 4e-19 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209 ||||||||||| | || || || || || || ||||| || | ||| || | | Sbjct 114514 AAAACTAAATGCAATGTAGATTCCTTCTGAATATTGTAGTCAG--ACAATGTGCGTCCAT 114571 Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269 | || || || ||||||||| | || ||||||||||| || ||| |||||||| || | Sbjct 114572 CCTCCAACTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGTGGGATTCCTTCCTTAT 114631 Query 15270 CACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 | |||||| ||| || ||| | || ||||||||| | || || || || || ||| Sbjct 114632 CCTGAATTTTAGCT-TTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATG 114690 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||||| |||| |||||| || ||||| ||||| Sbjct 114691 GTTTTACCCGTCAAAGTTTTGACGAAAATCTGCAT 114725 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| ||||| || || ||||| ||||| |||||| | | | | | ||||| Sbjct 104903 ACCAAATGGAGGGTAGACTCCTTTTGGATGTTATAATCGGACAAAGTACGGCCATCTTCG 104962 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||| ||| | || ||||| ||||| || ||| || ||||||||||| Sbjct 104963 AGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCTTTGTCCTGG 105022 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| || | || ||||| || || || || ||||| |||||||| Sbjct 105023 ATCTTGGCCTTAACGTTCTCGATGGTGTCTGACGGCTCAACCTCCAAGGTGATGGTTTTG 105082 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||||||| || || |||||||||||| Sbjct 105083 CCAGTCAGAGTCTTGACGAAAATTTGCATA 105112 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| ||||| || || ||||| |||||||| || | | | | ||||||| Sbjct 105359 ACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAGGTGCGCCCGTCTTCG 105418 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || ||||| | ||||||||||| ||||| ||||| ||||| ||||| | Sbjct 105419 AGCTGCTTACCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGA 105478 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| || |||| ||||| ||| || || || ||||| || ||||| Sbjct 105479 ATCTTGGCCTTGACGTTTTCAATGGTGTCGGATGGCTCAACCTCCAAGGTTATAGTTTTG 105538 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || || || || |||||||| Sbjct 105539 CCAGTCAGGGTCTTCACGAAGATTTGCAT 105567 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| || || || || || || || ||||| ||| | | | | ||||||| Sbjct 104675 ACCAAATGGAGAGTCGATTCCTTCTGAATATTGTAGTCGGACAAAGTACGGCCGTCTTCC 104734 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || ||||| || || | |||||||| ||||| || ||||| ||||| || || Sbjct 104735 AACTGTTTACCGGCAAAAATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTATCCTGG 104794 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| || ||| |||| ||||| || || || || ||||| ||||||||| Sbjct 104795 ATTTTGGCTTTAACATTTTCGATGGTGTCTGACGGCTCAACCTCCAAGGTGATGGTTTTA 104854 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || || || || || |||||| Sbjct 104855 CCGGTCAGTGTCTTCACGAAGATCTGCATA 104884 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 15207 CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTT 15266 ||||||| | || || ||||| | ||||||||||| ||||| ||||| ||||| | Sbjct 113657 CGTCTTCGAGCTGCTTACCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCCT 113716 Query 15267 TGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAA 15326 |||| ||| ||| ||| || |||| ||||| ||| || || || ||||| | Sbjct 113717 TGTCTTGAATCTTGGCCTTGACGTTTTCAATGGTGTCGGATGGCTCAACCTCCAAGGTTA 113776 Query 15327 TGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | ||||| || ||||| || || || || |||||||| Sbjct 113777 TAGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 113813 >seq21746 Length=7614 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || ||||| || || ||||| |||||||| ||| | | | | | ||| Sbjct 2407 AACACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGACAAAGTACGACCATCT 2348 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || ||||| ||||| ||| | |||||||||||||| || ||| || |||||||| || Sbjct 2347 TCCAATTGCTTGCCGGCGAAAATCAAACGTTGTTGATCTGGTGGTATACCTTCTTTATCT 2288 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||| ||| ||| |||| || || || | || || || || || ||||| Sbjct 2287 TGGATTTTAGCCTTGACATTTTCGATAGTGTCAGAAGGCTCGACCTCCAAAGTGATGGTC 2228 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || || || ||||| || ||||| ||||| || Sbjct 2227 TTGCCCGTAAGTGTTTTGACGAAAATCTGCATTTT 2193 >seq322 Length=316913 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||||||| | || || || ||||| || ||||||||| || ||| | | |||||| Sbjct 56220 ACTAAATGTAAAGTAGATTCCTTTTGAATATTGTAATCGGCTAAGGTTCGCCCATCTTCT 56279 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || || ||| | || | || ||||| || || || ||||| ||||| | Sbjct 56280 AATTGCTTTCCTGCGAAAATTAGGCGCTGTTGATCTGGAGGGATCCCTTCCTTGTCTTGA 56339 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| ||| || || ||||| | || || || | ||||| || || Sbjct 56340 ATTTTCGCCTTAACATGCTCAATTGTATCCGAAGGCTCAACCTCAAGAGTAATAGTCTTG 56399 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || ||||||||||| Sbjct 56400 CCCGTTAGGGTCTTAACGAAAATTTGCAT 56428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361796633506470