Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq280 118 8e-22
seq21746 104 2e-17
seq322 84.2 2e-11
>seq280
Length=341618
Score = 118 bits (130), Expect = 8e-22
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| | |||||| || || || ||||| |||||||||||| | | | |||||||
Sbjct 106498 AACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTC 106557
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
||||||||||| || | || |||||||| || || |||||| || ||||||||
Sbjct 106558 CAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGGAATACCCTCTTTGTCTTG 106617
Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
||| ||| |||||| | || || |||||| ||| || || | || ||||| ||
Sbjct 106618 AATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTT 106677
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15371
|| |||| ||| || || || |||||||| |||||||
Sbjct 106678 GCCAGTCAAAGTCTTCACGAAGATTTGCATTTTTGAAA 106715
Score = 118 bits (130), Expect = 8e-22
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| | |||||| || || || ||||| |||||||||||| | | | |||||||
Sbjct 114744 AACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTC 114803
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
||||||||||| || | || |||||||| || || |||||| || ||||||||
Sbjct 114804 CAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGGAATACCCTCTTTGTCTTG 114863
Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
||| ||| |||||| | || || |||||| ||| || || | || ||||| ||
Sbjct 114864 AATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTT 114923
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15371
|| |||| ||| || || || |||||||| |||||||
Sbjct 114924 GCCAGTCAAAGTCTTCACGAAGATTTGCATTTTTGAAA 114961
Score = 113 bits (124), Expect = 3e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| ||||| ||||| || || ||||| |||||||| || | | | |||||||
Sbjct 105131 ACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAGGTGCGGCCGTCTTCC 105190
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
|||||||| || ||| | |||||||||||||| || ||||| |||||||| || |
Sbjct 105191 AATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCTTGA 105250
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|| ||| ||| || |||| ||||| || || || || ||||| |||||||||
Sbjct 105251 ATCTTGGCCTTGACGTTTTCGATGGTGTCTGACGGCTCAACCTCCAAGGTGATGGTTTTA 105310
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || || || || || || |||||||||
Sbjct 105311 CCAGTTAGGGTCTTCACGAAGATTTGCATA 105340
Score = 113 bits (124), Expect = 3e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|||||||| ||||| || |||||||||||||| |||||| | | | | |||||
Sbjct 106043 ACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCGGACAAGGTGCGGCCATCTTCG 106102
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| || ||||| ||| | || ||||| ||||| || ||| || ||||| || ||
Sbjct 106103 AGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCCTTATCTTGG 106162
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|||||| || ||| |||| || |||||| | ||| || || | || ||||||||
Sbjct 106163 ATTTTGGCTTTCACATTTTCGATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTTTTG 106222
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| |||| ||||| ||||| |||||||||
Sbjct 106223 CCAGTCAATGTTTTAACAAATATTTGCATA 106252
Score = 113 bits (124), Expect = 3e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|||||||| ||||| || |||||||||||||| |||||| | | | | |||||
Sbjct 114289 ACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCGGACAAGGTGCGGCCATCTTCG 114348
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| || ||||| ||| | || ||||| ||||| || ||| || ||||| || ||
Sbjct 114349 AGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCCTTATCTTGG 114408
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|||||| || ||| |||| || |||||| | ||| || || | || ||||||||
Sbjct 114409 ATTTTGGCTTTCACATTTTCGATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTTTTG 114468
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| |||| ||||| ||||| |||||||||
Sbjct 114469 CCAGTCAATGTTTTAACAAATATTTGCATA 114498
Score = 109 bits (120), Expect = 4e-19
Identities = 156/215 (73%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209
||||||||||| | || || || || || || ||||| || | ||| || | |
Sbjct 106268 AAAACTAAATGCAATGTAGATTCCTTCTGAATATTGTAGTCAG--ACAATGTGCGTCCAT 106325
Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269
| || || || ||||||||| | || ||||||||||| || ||| |||||||| || |
Sbjct 106326 CCTCCAACTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGTGGGATTCCTTCCTTAT 106385
Query 15270 CACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328
| |||||| ||| || ||| | || ||||||||| | || || || || || |||
Sbjct 106386 CCTGAATTTTAGCT-TTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATG 106444
Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|||||||| |||| |||||| || ||||| |||||
Sbjct 106445 GTTTTACCCGTCAAAGTTTTGACGAAAATCTGCAT 106479
Score = 109 bits (120), Expect = 4e-19
Identities = 156/215 (73%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209
||||||||||| | || || || || || || ||||| || | ||| || | |
Sbjct 114514 AAAACTAAATGCAATGTAGATTCCTTCTGAATATTGTAGTCAG--ACAATGTGCGTCCAT 114571
Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269
| || || || ||||||||| | || ||||||||||| || ||| |||||||| || |
Sbjct 114572 CCTCCAACTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGTGGGATTCCTTCCTTAT 114631
Query 15270 CACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328
| |||||| ||| || ||| | || ||||||||| | || || || || || |||
Sbjct 114632 CCTGAATTTTAGCT-TTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATG 114690
Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|||||||| |||| |||||| || ||||| |||||
Sbjct 114691 GTTTTACCCGTCAAAGTTTTGACGAAAATCTGCAT 114725
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| ||||| ||||| || || ||||| ||||| |||||| | | | | | |||||
Sbjct 104903 ACCAAATGGAGGGTAGACTCCTTTTGGATGTTATAATCGGACAAAGTACGGCCATCTTCG 104962
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| || ||||| ||| | || ||||| ||||| || ||| || |||||||||||
Sbjct 104963 AGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCTTTGTCCTGG 105022
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|| ||| ||| || | || ||||| || || || || ||||| ||||||||
Sbjct 105023 ATCTTGGCCTTAACGTTCTCGATGGTGTCTGACGGCTCAACCTCCAAGGTGATGGTTTTG 105082
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| |||||||| || || ||||||||||||
Sbjct 105083 CCAGTCAGAGTCTTGACGAAAATTTGCATA 105112
Score = 102 bits (112), Expect = 6e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| ||||| ||||| || || ||||| |||||||| || | | | | |||||||
Sbjct 105359 ACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAGGTGCGCCCGTCTTCG 105418
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| || || ||||| | ||||||||||| ||||| ||||| ||||| ||||| |
Sbjct 105419 AGCTGCTTACCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGA 105478
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|| ||| ||| || |||| ||||| ||| || || || ||||| || |||||
Sbjct 105479 ATCTTGGCCTTGACGTTTTCAATGGTGTCGGATGGCTCAACCTCCAAGGTTATAGTTTTG 105538
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| ||||| || || || || ||||||||
Sbjct 105539 CCAGTCAGGGTCTTCACGAAGATTTGCAT 105567
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| ||||| || || || || || || || ||||| ||| | | | | |||||||
Sbjct 104675 ACCAAATGGAGAGTCGATTCCTTCTGAATATTGTAGTCGGACAAAGTACGGCCGTCTTCC 104734
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
|| ||||| || || | |||||||| ||||| || ||||| ||||| || ||
Sbjct 104735 AACTGTTTACCGGCAAAAATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTATCCTGG 104794
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|||||| || ||| |||| ||||| || || || || ||||| |||||||||
Sbjct 104795 ATTTTGGCTTTAACATTTTCGATGGTGTCTGACGGCTCAACCTCCAAGGTGATGGTTTTA 104854
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| ||||| || || || || || ||||||
Sbjct 104855 CCGGTCAGTGTCTTCACGAAGATCTGCATA 104884
Score = 86.0 bits (94), Expect = 5e-12
Identities = 113/157 (72%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 15207 CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTT 15266
||||||| | || || ||||| | ||||||||||| ||||| ||||| ||||| |
Sbjct 113657 CGTCTTCGAGCTGCTTACCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCCT 113716
Query 15267 TGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAA 15326
|||| ||| ||| ||| || |||| ||||| ||| || || || ||||| |
Sbjct 113717 TGTCTTGAATCTTGGCCTTGACGTTTTCAATGGTGTCGGATGGCTCAACCTCCAAGGTTA 113776
Query 15327 TGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
| ||||| || ||||| || || || || ||||||||
Sbjct 113777 TAGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 113813
>seq21746
Length=7614
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211
|| || || || ||||| || || ||||| |||||||| ||| | | | | | |||
Sbjct 2407 AACACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGACAAAGTACGACCATCT 2348
Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271
|| ||||| ||||| ||| | |||||||||||||| || ||| || |||||||| ||
Sbjct 2347 TCCAATTGCTTGCCGGCGAAAATCAAACGTTGTTGATCTGGTGGTATACCTTCTTTATCT 2288
Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331
||||| ||| ||| |||| || || || | || || || || || |||||
Sbjct 2287 TGGATTTTAGCCTTGACATTTTCGATAGTGTCAGAAGGCTCGACCTCCAAAGTGATGGTC 2228
Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
|| || || || ||||| || ||||| ||||| ||
Sbjct 2227 TTGCCCGTAAGTGTTTTGACGAAAATCTGCATTTT 2193
>seq322
Length=316913
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|||||||| | || || || ||||| || ||||||||| || ||| | | ||||||
Sbjct 56220 ACTAAATGTAAAGTAGATTCCTTTTGAATATTGTAATCGGCTAAGGTTCGCCCATCTTCT 56279
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
||||| || || ||| | || | || ||||| || || || ||||| ||||| |
Sbjct 56280 AATTGCTTTCCTGCGAAAATTAGGCGCTGTTGATCTGGAGGGATCCCTTCCTTGTCTTGA 56339
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
||||| ||| ||| || || ||||| | || || || | ||||| || ||
Sbjct 56340 ATTTTCGCCTTAACATGCTCAATTGTATCCGAAGGCTCAACCTCAAGAGTAATAGTCTTG 56399
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || || || || |||||||||||
Sbjct 56400 CCCGTTAGGGTCTTAACGAAAATTTGCAT 56428
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361796633506470
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |