Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_004745.1 Length=30728 Score E Sequences producing significant alignments: (Bits) Value seq52999 655 0.0 >seq52999 Length=1923 Score = 655 bits (726), Expect = 0.0 Identities = 1258/1824 (69%), Gaps = 53/1824 (3%) Strand=Plus/Minus Query 997 ATCGGTGAGCTGTGATGCACGGCAGCACGCAGACTTTTTGCCAGACCGGTAAAGCTGACC 1056 || |||||||||||||||||||| || || | | ||||| ||| || ||| || Sbjct 1908 ATGGGTGAGCTGTGATGCACGGCGGCGCGGAACGTGCGCGCCAGCCCGTCAACGCTCACG 1849 Query 1057 GGCGGCTCATACCATCTGCCGTTACTGATGCATTCGACGTAATCCAGAATGTCACGGCGG 1116 || || |||||||| | | || | | ||| || ||||| ||||| | || |||||| Sbjct 1848 GGTGGTTCATACCAGCGATCATTGATAACGCACTCCACGTAGTCCAGCAGTTCGCGGCGG 1789 Query 1117 TCGAGTACCGGCACCGGCTCGCCAAAGGTGAATGCCTCCATTTTCGGGGCGCTGGCGGTC 1176 || || ||||| | ||| ||||||||||| || |||||| || || | | |||| Sbjct 1788 TCCAGCACCGGGATCGGGTCGCCAAAGGTAAACGCCTCCGA---CGCTGCCCCGCTGGTC 1732 Query 1177 ATTGTTTT-----TGCCGCA--GGTTGCG-GTGTTTTCCCTTTTTTC--TTGCTCATCAG 1226 || ||| | ||| ||| || |||| | | | | || | | ||||||||||| Sbjct 1731 AT-GTTATCCGGCTGCGGCACGGGCTGCGTGCGGGTGCGGTTCCTGCGTTTGCTCATCAG 1673 Query 1227 TAAAACTCCAGAATGGTGGATGTCAGCGGG-GTGCTGATACCGGCGGTG-AGTGGCTCAT 1284 |||| ||||| |||| | | ||| | |||| | | | | || || ||||| | Sbjct 1672 TAAATCTCCACAATGTT------CTGCGTGTGTGCCGC--CTGTCCCTGCAGCGGCTCGT 1621 Query 1285 TTAACAGGGCGTGCATGGTCGCCCAGGCGAGGTCGGCGTGGCTGGCTTCCTCGCTGCGGC 1344 || ||| |||||||||||||||||||| | ||| |||||||| ||||||||||||||| Sbjct 1620 TTGCCAGCGCGTGCATGGTCGCCCAGGCTAAATCGCCGTGGCTGACTTCCTCGCTGCGGC 1561 Query 1345 TGGCCTCATAGGTGGCGCTGCGTCCGCTGCTGGTCATGGTCTTGCGGATAGCCATAAACG 1404 ||| |||||||| | | | |||||| || ||| |||||||||| |||||| | Sbjct 1560 TGGTTTCATAGGTCGGACGGTTGCCGCTGGCCGTGGTGGCTTTGCGGATAGACATAAATG 1501 Query 1405 AGCTG-GTGATGTCGGTGGCGCTGACGTCATATTCCAGACAGCCACGGCGGATAACGTCT 1463 | ||| | ||||||| | |||| ||||| | ||||| | || | | ||| ||| Sbjct 1500 A-CTGCGCGATGTCGAGGTGGCTGGCGTCAAACTCCAGCCGCCCGCTGGCGATGGTGTCG 1442 Query 1464 TTTGCCTTGAGCACCATTGCGGTTTTCATTTCCGGTGTGTAGCGGATATCGCGCGCG-GC 1522 | ||||| ||||||| ||| |||||| | ||| | ||| | || | | || Sbjct 1441 TAAGCCTTCAGCACCAGGGCGTTTTTCACGTTCGGGTTATAGACAAACTCCTTCACCTGC 1382 Query 1523 AGGATAGAACGAGCGCACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATACC 1582 ||| |||| | || || | | ||||| | |||| |||||||| || || || Sbjct 1381 GGGA-AGAAGGCTTTGACATTCTCGTATACGCCAAGCCCGACGCCGGTGGAGTCGATGCC 1323 Query 1583 GATGTATTCGACGTTATATTTTTCGGTGAGTTTGCGGATGGATTCAGCCTGGGTGGCAAA 1642 ||| || ||||||||| | | || || | | ||||| |||||||| | || Sbjct 1322 GATATAGGTGACGTTATACTGCTGCGTCAGCGTCCTGATGGCGTCAGCCTGCGCCCGGAA 1263 Query 1643 GTCCATGCCTTTCCACTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACCGG 1702 |||||| || |||||||||||||||||| || | ||| ||||| || | ||| | || Sbjct 1262 GTCCATCCCGCGCCACTGGTGACGCTCAAGGATGCGGAACTTGCCGCCCGGCACGGCAGG 1203 Query 1703 CGGTGCCAGTACCACGCATCCGGCACTGTCGCCA--CGGTGTGAC-------GGGTCGTA 1753 |||||||| |||||||||||||| |||||||| | | || | |||||||| Sbjct 1202 CGGTGCCATGACCACGCATCCGGCGCTGTCGCCGTTCTGCGTTCCCTTCGCGGGGTCGTA 1143 Query 1754 ACCAATCCATACCGGGCGGGAGCCGAACGGATTG-GCGGCAAAGGGTGCATAGTCTTCCC 1812 || ||||| || |||||||||| ||| || | | || |||| || Sbjct 1142 GCCGATCCACACTTCTTTCCAGCCGAACGGGCGCAGCGCCAGCGCCT-CAAAGTCGGTCC 1084 Query 1813 ATTCTTCC-AGCGTGTCGACCATGCAGCGTTGCAGCTCCTCGAACGGGAACACCGATGCC 1871 | ||||| ||| |||| |||||||| |||||| | | | |||| ||||| ||| Sbjct 1083 AGACTTCCCAGC-TGTCCACCATGCATTTCTGCAGCATGGCCAGCTGGAATACCGACGCC 1025 Query 1872 TTGTCGTCAACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGT 1931 ||||| | ||| | ||||| | |||||| | |||| || | ||||| ||||| Sbjct 1024 AGATCGTCCATAAAGACGCACATCAGCAGGTTCTGGTAATCCTCCGGGCTGTAG-CGCGT 966 Query 1932 TTG-AGCTGCTCAATGTCGAACAGCGTGCAGCCGCCTTTCAGGGCGTCCTCAATGGTGAC 1990 | |||||||| | ||| ||||| |||||||| || || || |||| |||||| Sbjct 965 GCGCAGCTGCTCCAGGTCAAACAGGTCACAGCCGCCGCGCACCGCATCTTCAACGGTGAC 906 Query 1991 AATCTGCCGCCACTGGCCGTCCGCACAGAGAAGACCTCCGGCAAGGGCGTTATGACTGAC 2050 ||||| || |||||||||| | ||||| |||| |||| || | | ||| |||| Sbjct 905 GATCTGGCGAAACTGGCCGTCTTCGCAGAGGCGACCGGCGGCCAGTGACTGATGGCTGAG 846 Query 2051 GTCGATTTCCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTGAACAGTTCACCCGACCA 2110 ||| || || || || || || |||| || ||| ||||||| | ||| ||||| Sbjct 845 GTCAATATCAACCCGGTCAGCTT---TGGCCCGGCCCTTGTTGAACTGCGAACCGGACCA 789 Query 2111 GAACGGGTAGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGAGCGCAGGTG 2170 |||||| |||||| ||||| || ||||||||||||| || ||||| |||| | Sbjct 788 GAACGGATAGGCGCTGTGCGTGAGGCTGGACGGGGTGGAAAAGTAGGTTTCGCGCCACTT 729 Query 2171 GCTCTGTG-AG-GCCATACCTGATGCCACCTTACGCAGTACCTGAAAATTCGGGATCCAG 2228 || |||| || ||||| || || ||||| || ||||| ||||||| |||||||||||| Sbjct 728 -CT-TGTGCAGCGCCATGCCGGACGCCACTTTCTGCAGTTCCTGAAACTTCGGGATCCAG 671 Query 2229 AAAATCTCGTCGACGTACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGAGTTGGTGCCG 2288 ||| || || | |||||| | ||||| || |||||| |||||| || ||||||||| Sbjct 670 AAATATTCATCCAGGTACAGATTGCCGTGATAGCTCTGCGCGGTGCGGGCGTTGGTGCCC 611 Query 2289 AGAAAAATCAGTTTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACG 2348 || ||| ||| || |||||| || | | || ||||||| || ||||||| ||| Sbjct 610 AGGAAATACAGGCACGCACCGTTACTGAGC--GTCA-TCGGGTCGCCCTTCAGGTCTACG 554 Query 2349 TCAACCAGACGGGCAAAGGCGATGATGTATTCGCGGAACACATACGCCTGCGTTTTACTG 2408 || ||| |||||||| | |||||||| | ||| || | |||||||| |||||| Sbjct 553 TCCACCTCGCGGGCAAATTCAATGATGTACTGCTTGAAGACGTGCGCCTGCGCCTTACTG 494 Query 2409 GCCGACAGAAAAATCTGGTTATGACCGGTTTTCAGGGCACGCAGCAGCGCCTCGCGGGAA 2468 || || || || ||||| || | ||||| |||| ||| | |||||||||||||| | Sbjct 493 GCTGAAAGGAATATCTGATTGCGCCCGGTGGTCAGCGCATCGATCAGCGCCTCGCGGGCA 434 Query 2469 AAATAAAACGTCGCGCCAATCTGGCGGGATTTCAGGATATCTCGGATGCGGTGCTCAAGC 2528 ||| | || || || ||||||||||| || ||||| | | |||| | || || | | Sbjct 433 AAAAAGAAGGTGGCCCCAATCTGGCGCGACTTCAGCAGGTTGCGGACGGAGTACTTATTC 374 Query 2529 CCGGCGCGATACCAGTGCAACTGATATTCGAAAGACTGCTCAAAGAAAATCTGCTCCAGC 2588 ||||| |||| || ||| || |||| | | ||||| || || |||| Sbjct 373 CCGGCCTCCCACCACTGGCGCTGGTAGCCGAACATCGAGCCGTGGAAAACCTCCTGCAGC 314 Query 2589 TTTTCGATGGCCTCGTCACTGAAAAAATTCTTTTTCGGTTTGCGACGCCCGCCTTTGTTG 2648 || || || ||||| ||||| | ||||||| ||| |||| ||| |||||| Sbjct 313 TTCTCAATCTGTTCGTCGCTGAACAGGTTCTTTTCCGGGGGCTTACGCGGGCCCTTGTTG 254 Query 2649 CGGTTAGCGACGTTCGGATTAAGGTCTGCCTCGTTGCCGGTCTGACTGTAGCGGTTGACC 2708 ||||| | ||||||||||| ||||| || || |||||| | ||| | | || | Sbjct 253 CGGTTCTCCACGTTCGGATTCAGGTCCGCTTCATTGCCGCCATTGCTGAATTTGCCGATC 194 Query 2709 CGTGCCAGTCGTTCAATCTGGCGTCCCAGCAGGTCAATTTCCTTGAAGTCACCGCCGGTT 2768 || || | || || ||| || |||||||||| |||||||||||||| || Sbjct 193 CGGGCATGGCGCTCGGACTGCCGCGCCAGCAGGTCGATTTCCTTGAAGTCCTTTCCTTCC 134 Query 2769 TTCTGCGGTTTGATGATGAGCTGG 2792 |||||| || |||||||||||| Sbjct 133 TTCTGCTCCTTCATGATGAGCTGG 110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 98106923712600