Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq22380 86.0 5e-12 seq8352 84.2 2e-11 seq280 82.4 6e-11 >seq22380 Length=7273 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 21139 ACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTGC 21198 ||||||||||| ||||| ||||| ||||| || | ||| |||||||| | | | | Sbjct 6587 ACGTTGCCCAGGTCGCCAACGTGACGCTCCTCGTCAGTGGGGCCGCCGTGAGTCTTGCCC 6646 Query 21199 GTAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGTGA 21258 ||||| ||||| | || | || |||||||||||| || ||||||| ||||||||| Sbjct 6647 TGTGGGTTGAAGTGAGCACCAGACGAGGTGCAGCCGTTGGTGTTGTCGCCAAACTCGTGA 6706 Query 21259 AC 21260 || Sbjct 6707 AC 6708 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 21139 ACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTGC 21198 ||||||||||| ||||| ||||| ||||| || | ||| |||||||| | | | | Sbjct 6816 ACGTTGCCCAGGTCGCCAACGTGACGCTCCTCGTCAGTGGGGCCGCCGTGAGTCTTGCCC 6875 Query 21199 GTAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGTGA 21258 ||||| ||||| | || | || |||||||||||| || ||||||| ||||||||| Sbjct 6876 TGTGGGTTGAAGTGAGCACCAGACGAGGTGCAGCCGTTGGTGTTGTCGCCAAACTCGTGA 6935 Query 21259 AC 21260 || Sbjct 6936 AC 6937 >seq8352 Length=27642 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTG 21197 || ||||||||| ||||||||||| || | ||| | |||| || ||||| | || Sbjct 21317 GATGTTGCCCAGGTCGCCGACGTGTCGGGCGGCGTCTCCGGGCGCCCCGTGGCTGTGTCC 21258 Query 21198 CGTAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGTG 21257 | ||||| ||||| ||| | |||||||||| |||||||||||||| ||| Sbjct 21257 GGCGGGGTTGTAGTGCGGGCCCATGCTGGTGCAGCCGTCCGAGGTGTCGCCGAACTGGTG 21198 Query 21258 AACGTGAAAGCCGTGCAGTCCGCGCGGCAGGTTGAGCAGATGGCCCGTGATGCGCA 21313 |||||||| |||||| || ||| |||| | ||| | |||| |||| ||| Sbjct 21197 GACGTGAAAACCGTGCTTGCCCGGCGTCAGGCCGCGCACCTCGCCCACGATGTGCA 21142 >seq280 Length=341618 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 ||||| ||||| ||||| ||||||||||| || | || ||| | ||||||| ||| Sbjct 106277 TGCAATGTAGATTCCTTCTGAATATTGTAGTCAGACAATGTGCGTCCATCCTCCAACTGC 106336 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || || |||| | | || ||||| || | || || || || |||||| Sbjct 106337 TTGCCAGCGAAAATTAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCCTGAATTTTA 106396 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 ||| || | | | |||||| |||||| || | || ||||||||||| || Sbjct 106397 GCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTACCCGTC 106456 Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041 ||||||||||| ||||| ||||| Sbjct 106457 AAAGTTTTGACGAAAATCTGCAT 106479 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 ||||| ||||| ||||| ||||||||||| || | || ||| | ||||||| ||| Sbjct 114523 TGCAATGTAGATTCCTTCTGAATATTGTAGTCAGACAATGTGCGTCCATCCTCCAACTGC 114582 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || || |||| | | || ||||| || | || || || || |||||| Sbjct 114583 TTGCCAGCGAAAATTAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCCTGAATTTTA 114642 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 ||| || | | | |||||| |||||| || | || ||||||||||| || Sbjct 114643 GCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTACCCGTC 114702 Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041 ||||||||||| ||||| ||||| Sbjct 114703 AAAGTTTTGACGAAAATCTGCAT 114725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414134890637980