Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq31836 291 3e-74 >seq31836 Length=4037 Score = 291 bits (322), Expect = 3e-74 Identities = 356/483 (74%), Gaps = 11/483 (2%) Strand=Plus/Minus Query 50286 GATGTGTTCGCCGGATACATCGTGGGATGGCAGGTCTCATCATCCATGGAAACAACATTC 50345 ||||||||||| || || ||||| |||| || |||||| |||||||||| | || Sbjct 2797 GATGTGTTCGCTGGTGTTATTGTGGGGTGGCGAGTGTCATCAACCATGGAAACCTCGTTG 2738 Query 50346 GTGCTGGATGCACTGGAGCAGGCGTTGTGGGCCCGTCGGCC-----GTCCGGCACAATCC 50400 || ||||| |||||||| |||||||| |||||| | | || || |||| |||| Sbjct 2737 GTTCTGGACGCACTGGAACAGGCGTTATGGGCCAGAAGACCAGATGGT--GGCATCATCC 2680 Query 50401 ATCACAGTGATAAAGGTTCTCAGTATGTATCGCTGGCCTACACGCAGCGGCTTAAGGAAG 50460 |||| |||||| || || || || || || ||||| || ||||| || | || || | Sbjct 2679 ATCATAGTGATCGTGGCTCCCAATACGTCTCTCTGGCGTATACGCAACGATTGAAAGAGG 2620 Query 50461 CCGGATTACTGGCATCAACAGGGA--GTACTGGCGACTCGTATGACAACGCGATGGCTGA 50518 | | | |||||||| ||| | ||| || |||||||||||||||||| |||| || Sbjct 2619 CTGAAGCGATGGCATCAGTAGGTACCGTA--GGTGACTCGTATGACAACGCGTTGGCAGA 2562 Query 50519 GAGCATCAATGGTCTTTACAAAGCGGAGGTAATACACCGTAAGAGCTGGAAAAACCGGAC 50578 || ||||| || | ||||||||||||||||||||||| |||| |||||||| || Sbjct 2561 AAGTATCAACGGGTTATACAAAGCGGAGGTAATACACCGGCAGAGTTGGAAAAATAGGCA 2502 Query 50579 AGAAGTGGAACTGGCCACACTAACGTGGGTGGACTGGTATAACAATCGACGATTGCTGGA 50638 || ||||| |||| || | ||||| |||||| ||||| || ||||||||||| Sbjct 2501 GGATGTGGAGTTGGCGACGTTGGACTGGGTAAACTGGTTCAACAACCGCCGATTGCTGGA 2442 Query 50639 AAGGCTGGGCCATATTCCTCCGGCAGAAGCAGAAAAAGCTTATTATGCTTCCATCGGAAA 50698 | | | ||| || | |||| | |||||||| || | |||||||||||| | | Sbjct 2441 ACGCATCGGCTATGTAGCTCCAGTTGAAGCAGAGCAAACGTATTATGCTTCCCTGATGGA 2382 Query 50699 TAATGATCTGGCAGCCTGAGTTCACAGATAAAATACTCTCCAGGAAACCCGGGGCGGTTC 50758 ||| |||| |||||||||||||| | | ||| ||||||| ||||| |||||||||||| Sbjct 2381 TAAAGATCAGGCAGCCTGAGTTCCCGTACTAAAAACTCTCCCGGAAAACCGGGGCGGTTC 2322 Query 50759 AGG 50761 ||| Sbjct 2321 AGG 2319 Score = 269 bits (298), Expect = 1e-67 Identities = 353/483 (73%), Gaps = 13/483 (3%) Strand=Plus/Minus Query 53126 GATGTGTTTGCCGGATACATTGTGGGGTGGCGGGTCTCATCGTCCATGGAGACGACATTC 53185 |||||||| || || |||||||||||||| || ||||| ||||||| || | || Sbjct 2797 GATGTGTTCGCTGGTGTTATTGTGGGGTGGCGAGTGTCATCAACCATGGAAACCTCGTTG 2738 Query 53186 GTGCTGGATGCACTGGAGCAGGCGTTATGGGCCCGTCGACC-----GTCCGGCACGGTCC 53240 || ||||| |||||||| ||||||||||||||| | |||| || |||| ||| Sbjct 2737 GTTCTGGACGCACTGGAACAGGCGTTATGGGCCAGAAGACCAGATGGT--GGCATCATCC 2680 Query 53241 ATCACAGTGATAAAGGTTCTCAGTATGTATCGCTGGCCTACACACAGCGGCTTAAGGAAG 53300 |||| |||||| || || || || || || ||||| || || || || | || || | Sbjct 2679 ATCATAGTGATCGTGGCTCCCAATACGTCTCTCTGGCGTATACGCAACGATTGAAAGAGG 2620 Query 53301 CCGGATTACTGGCATCAACAGGAAGTACAGGCGACTCGTATGACAACGCGATGGCGGAGA 53360 | | | |||||||| ||| | ||| |||||||||||||||||| |||| || | Sbjct 2619 CTGAAGCGATGGCATCAGTAGGTACCGTAGGTGACTCGTATGACAACGCGTTGGCAGAAA 2560 Query 53361 GCATCAATGGTCTTTACAAAGCGGAGGTAATACACCGTAAGAGCTGGAAAAACCGTGCAG 53420 | ||||| || | ||||||||||||||||||||||| |||| |||||||| | |||| Sbjct 2559 GTATCAACGGGTTATACAAAGCGGAGGTAATACACCGGCAGAGTTGGAAAAATAG-GCAG 2501 Query 53421 AA-GTGGAACTGGCCACACTCACGTGGGTGGACTGGTATAACAATCGACGATTGCTGGAA 53479 | ||||| |||| || | ||||| |||||| ||||| || |||||||||||| Sbjct 2500 GATGTGGAGTTGGCGACGTTGGACTGGGTAAACTGGTTCAACAACCGCCGATTGCTGGAA 2441 Query 53480 AGGCTGGGCCACACTCCTCCGGCAGAAGCAGAAAAAGCTTATTATGCTTCCATC--GGAA 53537 | | ||| | |||| | |||||||| || | |||||||||||| | ||| Sbjct 2440 CGCATCGGCTATGTAGCTCCAGTTGAAGCAGAGCAAACGTATTATGCTTCCCTGATGGAT 2381 Query 53538 ACGATGATCTGGCAGCCTGAGTTCACAGATAAAACACTCTCCAGGAAACCCGGGACGGTT 53597 | | |||| |||||||||||||| | | ||| ||||||| ||||| ||||| ||||| Sbjct 2380 A--AAGATCAGGCAGCCTGAGTTCCCGTACTAAAAACTCTCCCGGAAAACCGGGGCGGTT 2323 Query 53598 CAG 53600 ||| Sbjct 2322 CAG 2320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185063735013680