Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_004914.3 Length=62706 Score E Sequences producing significant alignments: (Bits) Value seq31836 284 5e-72 >seq31836 Length=4037 Score = 284 bits (314), Expect = 5e-72 Identities = 354/480 (74%), Gaps = 9/480 (2%) Strand=Plus/Plus Query 56237 TGAACCGCCCCGGTTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATC 56296 ||||||||||||||||||| ||||||| ||| | | |||||||||||||| |||| | Sbjct 2321 TGAACCGCCCCGGTTTTCCGGGAGAGTTTTTAGTACGGGAACTCAGGCTGCCTGATCTT- 2379 Query 56297 GTTTCC--GATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAGGAGTATGGCCCAGC 56354 | ||| | |||||||||||| | || |||||||| | |||| || ||| | Sbjct 2380 -TATCCATCAGGGAAGCATAATACGTTTGCTCTGCTTCAACTGGAGCTACATAGCCGATG 2438 Query 56355 CTTCCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCAC- 56413 | | |||||||||| || ||||| |||||| ||||| | || |||| ||||| Sbjct 2439 CGTTCCAGCAATCGGCGGTTGTTGAACCAGTTTACCCAGTCCAACGTCGCCAACTCCACA 2498 Query 56414 TTCTGCACGGTTTTTCCAGCTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGAT 56473 | |||| | |||||||| |||| ||||||||||||||||||||||| | || ||||| Sbjct 2499 TCCTGC-CTATTTTTCCAACTCTGCCGGTGTATTACCTCCGCTTTGTATAACCCGTTGAT 2557 Query 56474 GCTCTCAGCCATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCC 56533 || || |||| |||||||||||||||||| ||| | ||| |||||||| | | Sbjct 2558 ACTTTCTGCCAACGCGTTGTCATACGAGTCACCTACGGTACCTACTGATGCCATCGCTTC 2617 Query 56534 GGCTTCTTTTAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTG 56593 || ||||| | ||| | |||||| ||||| || || || || ||||| ||| || || Sbjct 2618 AGCCTCTTTCAATCGTTGCGTATACGCCAGAGAGACGTATTGGGAGCCACGATCACTATG 2677 Query 56594 ATGGATGGTG---CCAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCAC 56650 ||||||| || ||| || | | |||||| |||||||| ||||| || ||||| || Sbjct 2678 ATGGATGATGCCACCATCTGGTCTTCTGGCCCATAACGCCTGTTCCAGTGCGTCCAGAAC 2737 Query 56651 GAATGTCGTTTCCATAGACGATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATC 56710 || | |||||||| | ||||| || ||||||||||| || || || |||||||| Sbjct 2738 CAACGAGGTTTCCATGGTTGATGACACTCGCCACCCCACAATAACACCAGCGAACACATC 2797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200322577393290