Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_004928.1 Length=167560 Score E Sequences producing significant alignments: (Bits) Value seq81708 194 2e-44 seq85787 114 1e-20 >seq81708 Length=1085 Score = 194 bits (214), Expect = 2e-44 Identities = 157/190 (83%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62059 GCCATTATAGACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCA 62118 || |||| || || || ||||| ||||||| ||||| || |||||||| || || |||| Sbjct 234 GCAATTACAGGCTTTCGGTAAATGTACGAGTAATAACATCACGCTGCTGCTCTGGCGTCA 293 Query 62119 GAGAGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCG 62178 | | ||||||||| || ||||| ||||| || || ||||||| ||| ||||||||||||| Sbjct 294 GCGCGTTAAAGCGCACGGCATAGCCGGAAACGCGAATGGTCAACTGTGGATATTTTTCCG 353 Query 62179 GATGCTTAACTGCATCTTCCAGAGTTTCGCGACGCAGAATGTTAACGTTCAGGTGTTGAC 62238 |||| || || |||||||||| ||||| |||||||| | ||| ||||||||||| |||| Sbjct 354 GATGGTTCACGGCATCTTCCAACGTTTCACGACGCAGTACGTTTACGTTCAGGTGCTGAC 413 Query 62239 CACCTTCAAT 62248 |||||||||| Sbjct 414 CACCTTCAAT 423 >seq85787 Length=1013 Score = 114 bits (126), Expect = 1e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 62076 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 62135 || || ||||| | || || || |||||| || ||| || ||||| ||||| || Sbjct 602 GTGAAAGTACGTGTAATTACATCTTTCTGCTGCTCTTTAGTGAGCGAGTTGAAGCGTACA 661 Query 62136 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 62195 ||||| || || || ||||||||||||||||||||||| |||||||| | | ||||| Sbjct 662 GCATAGCCAGAAACGCGGATGGTCAGCTGCGGATATTTCTCCGGATGTTCCATGGCATCC 721 Query 62196 TCCAGAGTTTCGCGACGCAGAATGTTAACGTTCAGGTGTTGACCACCTTCAAT 62248 ||| | || ||| || | ||| |||||||| |||||||||||||| || Sbjct 722 AACAGCATCTCACGATTCATTACGTTGACGTTCAGATGTTGACCACCTTCGAT 774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535483241664000