Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq280 123 2e-23
seq21746 102 5e-17
>seq280
Length=341618
Score = 123 bits (136), Expect = 2e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220
|||| ||| | ||| ||||| ||||| || |||||||| ||||| || || ||| |||
Sbjct 106499 ACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCC 106558
Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280
||||| || || ||| |||||||||||||| || | || || || ||||| || |
Sbjct 106559 AATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGGAATACCCTCTTTGTCTTGA 106618
Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340
||| |||||| | | ||| || ||| |||| ||| |||||||| || || ||
Sbjct 106619 ATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTTG 106678
Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373
|| || | ||| || ||||| |||||||| |||
Sbjct 106679 CCAGTCAAAGTCTTCACGAAGATTTGCATTTTT 106711
Score = 123 bits (136), Expect = 2e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220
|||| ||| | ||| ||||| ||||| || |||||||| ||||| || || ||| |||
Sbjct 114745 ACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCC 114804
Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280
||||| || || ||| |||||||||||||| || | || || || ||||| || |
Sbjct 114805 AATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGGAATACCCTCTTTGTCTTGA 114864
Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340
||| |||||| | | ||| || ||| |||| ||| |||||||| || || ||
Sbjct 114865 ATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTTG 114924
Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373
|| || | ||| || ||||| |||||||| |||
Sbjct 114925 CCAGTCAAAGTCTTCACGAAGATTTGCATTTTT 114957
Score = 120 bits (132), Expect = 2e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201
||| || | || ||||| || ||||||||||| || || || || |||||||| |||||
Sbjct 106252 ACCTCCACGTAGGCGCAAAACTAAATGCAATGTAGATTCCTTCTGAATATTGTAGTCAGA 106311
Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261
||| || || || ||||| ||||| ||| || ||||||||||| || || | ||
Sbjct 106312 CAATGTGCGTCCATCCTCCAACTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGTGG 106371
Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321
|| ||||| || || ||| ||| || | | ||| || ||| || | |||
Sbjct 106372 GATTCCTTCCTTATCCTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAAC 106431
Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
|||| ||| || ||||| ||||| | |||||| |||||||| ||||||
Sbjct 106432 CTCCAAAGTGATGGTTTTACCCGTCAAAGTTTTGACGAAAATCTGCATG 106480
Score = 120 bits (132), Expect = 2e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201
||| || | || ||||| || ||||||||||| || || || || |||||||| |||||
Sbjct 114498 ACCTCCACGTAGGCGCAAAACTAAATGCAATGTAGATTCCTTCTGAATATTGTAGTCAGA 114557
Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261
||| || || || ||||| ||||| ||| || ||||||||||| || || | ||
Sbjct 114558 CAATGTGCGTCCATCCTCCAACTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGTGG 114617
Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321
|| ||||| || || ||| ||| || | | ||| || ||| || | |||
Sbjct 114618 GATTCCTTCCTTATCCTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAAC 114677
Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
|||| ||| || ||||| ||||| | |||||| |||||||| ||||||
Sbjct 114678 CTCCAAAGTGATGGTTTTACCCGTCAAAGTTTTGACGAAAATCTGCATG 114726
Score = 105 bits (116), Expect = 4e-18
Identities = 155/218 (71%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
|||| |||||||| | || ||||| ||||| || ||||| || ||||| || | |
Sbjct 105353 CGCAGGACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAGGTGCGCCCG 105412
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274
|| || | ||||| ||| ||| || |||||||||||||| | || || ||||| ||
Sbjct 105413 TCTTCGAGCTGCTTACCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTG 105472
Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331
|| |||| ||| || || ||| ||| |||||| || | ||| |||| |||
Sbjct 105473 TCTTGAATCTTGGCC---TTGACGTTTTCAATGGTGTCGGATGGCTCAACCTCCAAGGTT 105529
Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| ||||| || || || || || ||||| ||||||||
Sbjct 105530 ATAGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 105567
Score = 93.3 bits (102), Expect = 3e-14
Identities = 152/218 (70%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
|||| |||||||| | || ||||| ||||| || ||||| || ||||| || | |
Sbjct 105125 CGCAGGACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAGGTGCGGCCG 105184
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274
|| |||||||| || || || || |||||||| || || | || |||||||||||
Sbjct 105185 TCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTA 105244
Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331
|| |||| ||| || || ||| || ||||| || | ||| |||| ||
Sbjct 105245 TCTTGAATCTTGGCC---TTGACGTTTTCGATGGTGTCTGACGGCTCAACCTCCAAGGTG 105301
Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| ||||| || || || || || ||||| ||||||||
Sbjct 105302 ATGGTTTTACCAGTTAGGGTCTTCACGAAGATTTGCAT 105339
Score = 84.2 bits (92), Expect = 1e-11
Identities = 150/218 (69%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
|||| || ||||||| || |||||||||||||| || ||||| ||||| || |
Sbjct 106037 CGCAGGACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCGGACAAGGTGCGGCCA 106096
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273
|| || | ||||| || || |||||||| || || || | || || ||||| ||
Sbjct 106097 TCTTCGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCCTTA 106156
Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331
|| | | | || ||| || ||| || || ||| |||| ||| ||||||||
Sbjct 106157 TCTTGGATTTTGGC---TTTCACATTTTCGATAGTATCGGAAGGTTCAACCTCCAGAGTG 106213
Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| ||||| || || | ||||| || || ||||||||
Sbjct 106214 ATGGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 106251
Score = 84.2 bits (92), Expect = 1e-11
Identities = 150/218 (69%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
|||| || ||||||| || |||||||||||||| || ||||| ||||| || |
Sbjct 114283 CGCAGGACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCGGACAAGGTGCGGCCA 114342
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273
|| || | ||||| || || |||||||| || || || | || || ||||| ||
Sbjct 114343 TCTTCGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCCTTA 114402
Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331
|| | | | || ||| || ||| || || ||| |||| ||| ||||||||
Sbjct 114403 TCTTGGATTTTGGC---TTTCACATTTTCGATAGTATCGGAAGGTTCAACCTCCAGAGTG 114459
Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| ||||| || || | ||||| || || ||||||||
Sbjct 114460 ATGGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 114497
>seq21746
Length=7614
Score = 102 bits (112), Expect = 5e-17
Identities = 156/221 (71%), Gaps = 6/221 (3%)
Strand=Plus/Minus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
||||||||||| || | || ||||| ||||| || ||||| || |||||| | |
Sbjct 2410 CGCAACACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGACAAAGTACGACCA 2351
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273
|| ||||||||||| || || || |||||||| || || | ||||| ||||||||
Sbjct 2350 TCTTCCAATTGCTTGCCGGCGAAAATCAAACGTTGTTGATCTGGTGGTATACCTTCTTTA 2291
Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331
|| | | | ||| || || ||| || ||||| || | || |||| |||
Sbjct 2290 TCTTGGATTTTAGCC---TTGACATTTTCGATAGTGTCAGAAGGCTCGACCTCCAAAGTG 2234
Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372
|| || || |||||||| ||||| |||||||| ||||| ||
Sbjct 2233 ATGGTCTTGCCCGTAAGTGTTTTGACGAAAATCTGCATTTT 2193
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318440878209660
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |