Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq280 123 2e-23 seq21746 102 5e-17 >seq280 Length=341618 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||| ||| | ||| ||||| ||||| || |||||||| ||||| || || ||| ||| Sbjct 106499 ACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCC 106558 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||| || || ||| |||||||||||||| || | || || || ||||| || | Sbjct 106559 AATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGGAATACCCTCTTTGTCTTGA 106618 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| |||||| | | ||| || ||| |||| ||| |||||||| || || || Sbjct 106619 ATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTTG 106678 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 || || | ||| || ||||| |||||||| ||| Sbjct 106679 CCAGTCAAAGTCTTCACGAAGATTTGCATTTTT 106711 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||| ||| | ||| ||||| ||||| || |||||||| ||||| || || ||| ||| Sbjct 114745 ACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCC 114804 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||| || || ||| |||||||||||||| || | || || || ||||| || | Sbjct 114805 AATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGGAATACCCTCTTTGTCTTGA 114864 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| |||||| | | ||| || ||| |||| ||| |||||||| || || || Sbjct 114865 ATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTTG 114924 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 || || | ||| || ||||| |||||||| ||| Sbjct 114925 CCAGTCAAAGTCTTCACGAAGATTTGCATTTTT 114957 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || | || ||||| || ||||||||||| || || || || |||||||| ||||| Sbjct 106252 ACCTCCACGTAGGCGCAAAACTAAATGCAATGTAGATTCCTTCTGAATATTGTAGTCAGA 106311 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| || || || ||||| ||||| ||| || ||||||||||| || || | || Sbjct 106312 CAATGTGCGTCCATCCTCCAACTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGTGG 106371 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || ||||| || || ||| ||| || | | ||| || ||| || | ||| Sbjct 106372 GATTCCTTCCTTATCCTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAAC 106431 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 |||| ||| || ||||| ||||| | |||||| |||||||| |||||| Sbjct 106432 CTCCAAAGTGATGGTTTTACCCGTCAAAGTTTTGACGAAAATCTGCATG 106480 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || | || ||||| || ||||||||||| || || || || |||||||| ||||| Sbjct 114498 ACCTCCACGTAGGCGCAAAACTAAATGCAATGTAGATTCCTTCTGAATATTGTAGTCAGA 114557 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| || || || ||||| ||||| ||| || ||||||||||| || || | || Sbjct 114558 CAATGTGCGTCCATCCTCCAACTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGTGG 114617 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || ||||| || || ||| ||| || | | ||| || ||| || | ||| Sbjct 114618 GATTCCTTCCTTATCCTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAAC 114677 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 |||| ||| || ||||| ||||| | |||||| |||||||| |||||| Sbjct 114678 CTCCAAAGTGATGGTTTTACCCGTCAAAGTTTTGACGAAAATCTGCATG 114726 Score = 105 bits (116), Expect = 4e-18 Identities = 155/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| |||||||| | || ||||| ||||| || ||||| || ||||| || | | Sbjct 105353 CGCAGGACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAGGTGCGCCCG 105412 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||||| ||| ||| || |||||||||||||| | || || ||||| || Sbjct 105413 TCTTCGAGCTGCTTACCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTG 105472 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || |||| ||| || || ||| ||| |||||| || | ||| |||| ||| Sbjct 105473 TCTTGAATCTTGGCC---TTGACGTTTTCAATGGTGTCGGATGGCTCAACCTCCAAGGTT 105529 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || || || || ||||| |||||||| Sbjct 105530 ATAGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 105567 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| |||||||| | || ||||| ||||| || ||||| || ||||| || | | Sbjct 105125 CGCAGGACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAGGTGCGGCCG 105184 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||| || || || || |||||||| || || | || ||||||||||| Sbjct 105185 TCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTA 105244 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || |||| ||| || || ||| || ||||| || | ||| |||| || Sbjct 105245 TCTTGAATCTTGGCC---TTGACGTTTTCGATGGTGTCTGACGGCTCAACCTCCAAGGTG 105301 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || || || || ||||| |||||||| Sbjct 105302 ATGGTTTTACCAGTTAGGGTCTTCACGAAGATTTGCAT 105339 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| || ||||||| || |||||||||||||| || ||||| ||||| || | Sbjct 106037 CGCAGGACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCGGACAAGGTGCGGCCA 106096 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || || | ||||| || || |||||||| || || || | || || ||||| || Sbjct 106097 TCTTCGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCCTTA 106156 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | || ||| || ||| || || ||| |||| ||| |||||||| Sbjct 106157 TCTTGGATTTTGGC---TTTCACATTTTCGATAGTATCGGAAGGTTCAACCTCCAGAGTG 106213 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || | ||||| || || |||||||| Sbjct 106214 ATGGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 106251 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| || ||||||| || |||||||||||||| || ||||| ||||| || | Sbjct 114283 CGCAGGACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCGGACAAGGTGCGGCCA 114342 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || || | ||||| || || |||||||| || || || | || || ||||| || Sbjct 114343 TCTTCGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCCTTA 114402 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | || ||| || ||| || || ||| |||| ||| |||||||| Sbjct 114403 TCTTGGATTTTGGC---TTTCACATTTTCGATAGTATCGGAAGGTTCAACCTCCAGAGTG 114459 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || | ||||| || || |||||||| Sbjct 114460 ATGGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 114497 >seq21746 Length=7614 Score = 102 bits (112), Expect = 5e-17 Identities = 156/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || | || ||||| ||||| || ||||| || |||||| | | Sbjct 2410 CGCAACACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGACAAAGTACGACCA 2351 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || ||||||||||| || || || |||||||| || || | ||||| |||||||| Sbjct 2350 TCTTCCAATTGCTTGCCGGCGAAAATCAAACGTTGTTGATCTGGTGGTATACCTTCTTTA 2291 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || ||| || ||||| || | || |||| ||| Sbjct 2290 TCTTGGATTTTAGCC---TTGACATTTTCGATAGTGTCAGAAGGCTCGACCTCCAAAGTG 2234 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || || |||||||| ||||| |||||||| ||||| || Sbjct 2233 ATGGTCTTGCCCGTAAGTGTTTTGACGAAAATCTGCATTTT 2193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318440878209660