Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_005056.1 Length=32684 Score E Sequences producing significant alignments: (Bits) Value seq52999 657 0.0 seq69575 82.4 2e-11 >seq52999 Length=1923 Score = 657 bits (728), Expect = 0.0 Identities = 1258/1826 (69%), Gaps = 57/1826 (3%) Strand=Plus/Minus Query 996 ATCGGGGAGCTGTGATGCACGGCAGCACGCAGGCTTTTTGCCAGACCGGTAAAGCTGATT 1055 || || ||||||||||||||||| || || | | ||||| ||| || ||| | Sbjct 1908 ATGGGTGAGCTGTGATGCACGGCGGCGCGGAACGTGCGCGCCAGCCCGTCAACGCTCACG 1849 Query 1056 GGTGGCTCATACCATCTGCCGTTACTGATGCATTCGACGTAATCCAGAATGTCACGGCGG 1115 ||||| |||||||| | | || | | ||| || ||||| ||||| | || |||||| Sbjct 1848 GGTGGTTCATACCAGCGATCATTGATAACGCACTCCACGTAGTCCAGCAGTTCGCGGCGG 1789 Query 1116 TCGAGTACCGGCACCGGTTCGCCAAAGGTGAATGCCTCCATTTTCGGGGCGCTGGCGGTC 1175 || || ||||| | ||| ||||||||||| || |||||| || || | | |||| Sbjct 1788 TCCAGCACCGGGATCGGGTCGCCAAAGGTAAACGCCTCCGA---CGCTGCCCCGCTGGTC 1732 Query 1176 Attttttt----tGCCGCA--GGTTGCA-GTGTTTTCCCTTTTTTC--TTGCTCATCAGT 1226 || || | ||| ||| || ||| | | | | || | | |||||||||||| Sbjct 1731 ATGTTATCCGGCTGCGGCACGGGCTGCGTGCGGGTGCGGTTCCTGCGTTTGCTCATCAGT 1672 Query 1227 AAAACTCCAGAATGGTGGATGTCAGCG-GTGTGCTGATACCGGCGGTG-AGTGGCTCATT 1284 ||| ||||| |||| | | ||| |||||| | | | | || || ||||| || Sbjct 1671 AAATCTCCACAATGTT------CTGCGTGTGTGCCGC--CTGTCCCTGCAGCGGCTCGTT 1620 Query 1285 TAACAGGGCGTGCATGGTCGCCCAGGCGAGGTCGGCGTGGCTGGCTTCCTCGCTGCGGCT 1344 | ||| |||||||||||||||||||| | ||| |||||||| |||||||||||||||| Sbjct 1619 TGCCAGCGCGTGCATGGTCGCCCAGGCTAAATCGCCGTGGCTGACTTCCTCGCTGCGGCT 1560 Query 1345 GGCCTCATAGGTGGCGCTGCGTCCGCTGCTGGTCATGGTCTTGCGGATAGCCATAAACGA 1404 || |||||||| | | | |||||| || ||| |||||||||| |||||| || Sbjct 1559 GGTTTCATAGGTCGGACGGTTGCCGCTGGCCGTGGTGGCTTTGCGGATAGACATAAATGA 1500 Query 1405 GCTG-GTGATGTCGGTGGCGCTGACGTCATATTCCAGACAGCCACGGCGGATGACGTCTT 1463 ||| | ||||||| | |||| ||||| | ||||| | || | | |||| ||| | Sbjct 1499 -CTGCGCGATGTCGAGGTGGCTGGCGTCAAACTCCAGCCGCCCGCTGGCGATGGTGTCGT 1441 Query 1464 TTGCCTTGAGCACCATTGCGGTTTTCATTTCCGGCGTGTAGCGGATATCGCGCGCG-GCG 1522 ||||| ||||||| ||| |||||| | ||| | ||| | || | | ||| Sbjct 1440 AAGCCTTCAGCACCAGGGCGTTTTTCACGTTCGGGTTATAGACAAACTCCTTCACCTGCG 1381 Query 1523 GGATAGAACGAGCGCACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATACCG 1582 ||| |||| | || || | | ||||| | |||| |||||||| || || ||| Sbjct 1380 GGA-AGAAGGCTTTGACATTCTCGTATACGCCAAGCCCGACGCCGGTGGAGTCGATGCCG 1322 Query 1583 ATGTATTCGACGTTGTATTTTTCGGTGAGTTTGCGGATGGATTCCGCCTGAGTGGCAAAG 1642 || || |||||| || | | || || | | ||||| || ||||| | ||| Sbjct 1321 ATATAGGTGACGTTATACTGCTGCGTCAGCGTCCTGATGGCGTCAGCCTGCGCCCGGAAG 1262 Query 1643 TCCATGCCTTTCCACTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACCGGC 1702 ||||| || |||||||||||||||||| || | ||| ||||| || | ||| | ||| Sbjct 1261 TCCATCCCGCGCCACTGGTGACGCTCAAGGATGCGGAACTTGCCGCCCGGCACGGCAGGC 1202 Query 1703 GGTGCCAGTACCACGCATCCGGCGCTGTCGCCA--CGGTGTGAC-------GGGTCGTAA 1753 ||||||| ||||||||||||||||||||||| | | || | |||||||| Sbjct 1201 GGTGCCATGACCACGCATCCGGCGCTGTCGCCGTTCTGCGTTCCCTTCGCGGGGTCGTAG 1142 Query 1754 CCAATCCAGACCGGGCGGGAGCCGAACGGATTGGCG----GCAAACGGCGCATAGTCTTC 1809 || ||||| || |||||||||| ||| || | || | || |||| Sbjct 1141 CCGATCCACACTTCTTTCCAGCCGAACGG----GCGCAGCGCCAGCGCCTCAAAGTCGGT 1086 Query 1810 CCATTCTTCC-AGCGTGTCGACCATGCAGCGTTGCAGCTCCTCGAACGGGAATACCGACG 1868 ||| ||||| ||| |||| |||||||| |||||| | | | |||||||||||| Sbjct 1085 CCAGACTTCCCAGC-TGTCCACCATGCATTTCTGCAGCATGGCCAGCTGGAATACCGACG 1027 Query 1869 CCTTGTCGTCAACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGC 1928 || ||||| | ||| | ||||| | |||||| | |||| || | ||||| ||| Sbjct 1026 CCAGATCGTCCATAAAGACGCACATCAGCAGGTTCTGGTAATCCTCCGGGCTGTAG-CGC 968 Query 1929 GTTTA-AGCTGCTCAATGTCGAACAATGTGCAGCCACCTTTCAGGGCGTCCTCAATGGTG 1987 || |||||||| | ||| |||| ||||| || || || || |||| |||| Sbjct 967 GTGCGCAGCTGCTCCAGGTCAAACAGGTCACAGCCGCCGCGCACCGCATCTTCAACGGTG 908 Query 1988 ACAATCTGCCGCCACTGGCCGTCCGCACAGAGAAGACCTCCGGCAAGGGCGTTATGACTG 2047 || ||||| || |||||||||| | ||||| |||| |||| || | | ||| ||| Sbjct 907 ACGATCTGGCGAAACTGGCCGTCTTCGCAGAGGCGACCGGCGGCCAGTGACTGATGGCTG 848 Query 2048 ACGTCGATTTCCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTAAACAGTTCACCGGAC 2107 | ||| || || || || || || |||| || ||| ||| ||| | ||||||| Sbjct 847 AGGTCAATATCAACCCGGTCAGCTT---TGGCCCGGCCCTTGTTGAACTGCGAACCGGAC 791 Query 2108 CAGAACGGATAGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGAGCGCAGG 2167 ||||||||||||||| ||||| || ||||||||||||| || ||||| |||| Sbjct 790 CAGAACGGATAGGCGCTGTGCGTGAGGCTGGACGGGGTGGAAAAGTAGGTTTCGCGCCAC 731 Query 2168 TGACTCTGTG-AG-GCCATACCTGATGCCACCTTACGCAGTACCTGAAAATTCGGGATCC 2225 | || |||| || ||||| || || ||||| || ||||| ||||||| |||||||||| Sbjct 730 TT-CT-TGTGCAGCGCCATGCCGGACGCCACTTTCTGCAGTTCCTGAAACTTCGGGATCC 673 Query 2226 AGAAAATCTCGTCGACGTACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGAGTTGGTGC 2285 ||||| || || | |||||| | ||||| || |||||| |||||| || |||||||| Sbjct 672 AGAAATATTCATCCAGGTACAGATTGCCGTGATAGCTCTGCGCGGTGCGGGCGTTGGTGC 613 Query 2286 CGAGAAAAATCAGTTTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAA 2345 | || ||| ||| || |||||| || | | || ||||||| || ||||||| | Sbjct 612 CCAGGAAATACAGGCACGCACCGTTACTGAGC--GTCA-TCGGGTCGCCCTTCAGGTCTA 556 Query 2346 CGTCAACCAGCCGGGCAAAGGCGATGATGTATTCACGGAACACATACGCCTGCGTTTTAC 2405 |||| ||| |||||||| | |||||||| | ||| || | |||||||| |||| Sbjct 555 CGTCCACCTCGCGGGCAAATTCAATGATGTACTGCTTGAAGACGTGCGCCTGCGCCTTAC 496 Query 2406 TGGCCGACAGAAAAATCTGGTTATGACCGGTTTTCAGGGCGCGCAGCAGCGCCTCGCGGG 2465 |||| || || || ||||| || | ||||| |||| || | |||||||||||||| Sbjct 495 TGGCTGAAAGGAATATCTGATTGCGCCCGGTGGTCAGCGCATCGATCAGCGCCTCGCGGG 436 Query 2466 AAAAATAAAACGTCGCGCCAATCTGGCGGGATTTCAGGATATCGCGGATGCGGTGCTCAA 2525 |||| | || || || ||||||||||| || ||||| | | ||||| | || || | Sbjct 435 CAAAAAAGAAGGTGGCCCCAATCTGGCGCGACTTCAGCAGGTTGCGGACGGAGTACTTAT 376 Query 2526 GCCCGGCGCGATACCAGTGCAACTGATATTCGAAAGACTGCTCAAAGAAAATCTGCTCCA 2585 |||||| |||| || ||| || |||| | | ||||| || || || Sbjct 375 TCCCGGCCTCCCACCACTGGCGCTGGTAGCCGAACATCGAGCCGTGGAAAACCTCCTGCA 316 Query 2586 GCTTTTCGATGGCCTCGTCACTGAAAAAATTCTTTTTCGGTTTGCGACGCCCGCCTTTGT 2645 |||| || || ||||| ||||| | ||||||| ||| |||| ||| |||| Sbjct 315 GCTTCTCAATCTGTTCGTCGCTGAACAGGTTCTTTTCCGGGGGCTTACGCGGGCCCTTGT 256 Query 2646 TGCGGTTAGCGACGTTCGGATTAAGGTCTGCCTCGTTGCCGGTCTGACTGTAACGGTTGA 2705 ||||||| | ||||||||||| ||||| || || |||||| | ||| | | || Sbjct 255 TGCGGTTCTCCACGTTCGGATTCAGGTCCGCTTCATTGCCGCCATTGCTGAATTTGCCGA 196 Query 2706 CCCGTGCCAGTCGTTCAATCTGGCGTCCGAGCAGGTCAATTTCCTTGAAGTCACCGCCGG 2765 ||| || | || || ||| || | |||||||| |||||||||||||| || Sbjct 195 TCCGGGCATGGCGCTCGGACTGCCGCGCCAGCAGGTCGATTTCCTTGAAGTCCTTTCCTT 136 Query 2766 TTTTCTGCGGTTTGATGATGAGCTGG 2791 |||||| || |||||||||||| Sbjct 135 CCTTCTGCTCCTTCATGATGAGCTGG 110 >seq69575 Length=1340 Score = 82.4 bits (90), Expect = 2e-11 Identities = 184/271 (68%), Gaps = 19/271 (7%) Strand=Plus/Plus Query 1515 GCGCGGCGGGATAGAACGAGCGCACGAGCTG--GAACACGCCGACACCGAGGCCGGTGGC 1572 |||| ||||| |||| |||| ||||| | || ||||| | || | ||||||| | Sbjct 15 GCGCAGCGGGGAAGAATTTCAGCACAAGCTGATGTAC-CGCCG-CGCCAATGCCGGTGCC 72 Query 1573 ATCAATACCGATGTATTCGACGTTGTATTTTTCGGTGAGTTTGCGG---ATGGATTCCGC 1629 ||| || |||| | | |||||||| | |||||| ||| || ||| ||| Sbjct 73 ATCGATGTCGATATGCTGCACGTTGTACATGCGGGTGAG---GCGCTCAATAAATTTCGC 129 Query 1630 CTGAGTGGCAAAGTCCATGCCTTTCCACTGGTGACGCTCAAGTATTCTGAATTTGCCACC 1689 ||| |||| |||||||| | |||||||||||| | || | ||||||||| || Sbjct 130 CTGTTCTTCAAACTCCATGCCGCGCAGCTGGTGACGCTCGATTACGCGGAATTTGCCGCC 189 Query 1690 GGCCACCACCGGCGGTGCCAGTACCACGCATCCGGCGCTGTCGCC----ACGGTGTGAC- 1744 || |||| |||||| | || | || |||||||||||||| | ||| || Sbjct 190 GGGTACCAGCGGCGGCGAGAGGATGACAAGACCGGCGCTGTCGCCTTTGTCACTGTTACC 249 Query 1745 ----GGGTCGTAACCAATCCAGACCGGGCGG 1771 || ||||| ||||||||||| |||||| Sbjct 250 GTTGGGATCGTACCCAATCCAGACAGGGCGG 280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104359681704840