Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_005056.1
Length=32684
Score E
Sequences producing significant alignments: (Bits) Value
seq52999 657 0.0
seq69575 82.4 2e-11
>seq52999
Length=1923
Score = 657 bits (728), Expect = 0.0
Identities = 1258/1826 (69%), Gaps = 57/1826 (3%)
Strand=Plus/Minus
Query 996 ATCGGGGAGCTGTGATGCACGGCAGCACGCAGGCTTTTTGCCAGACCGGTAAAGCTGATT 1055
|| || ||||||||||||||||| || || | | ||||| ||| || ||| |
Sbjct 1908 ATGGGTGAGCTGTGATGCACGGCGGCGCGGAACGTGCGCGCCAGCCCGTCAACGCTCACG 1849
Query 1056 GGTGGCTCATACCATCTGCCGTTACTGATGCATTCGACGTAATCCAGAATGTCACGGCGG 1115
||||| |||||||| | | || | | ||| || ||||| ||||| | || ||||||
Sbjct 1848 GGTGGTTCATACCAGCGATCATTGATAACGCACTCCACGTAGTCCAGCAGTTCGCGGCGG 1789
Query 1116 TCGAGTACCGGCACCGGTTCGCCAAAGGTGAATGCCTCCATTTTCGGGGCGCTGGCGGTC 1175
|| || ||||| | ||| ||||||||||| || |||||| || || | | ||||
Sbjct 1788 TCCAGCACCGGGATCGGGTCGCCAAAGGTAAACGCCTCCGA---CGCTGCCCCGCTGGTC 1732
Query 1176 Attttttt----tGCCGCA--GGTTGCA-GTGTTTTCCCTTTTTTC--TTGCTCATCAGT 1226
|| || | ||| ||| || ||| | | | | || | | ||||||||||||
Sbjct 1731 ATGTTATCCGGCTGCGGCACGGGCTGCGTGCGGGTGCGGTTCCTGCGTTTGCTCATCAGT 1672
Query 1227 AAAACTCCAGAATGGTGGATGTCAGCG-GTGTGCTGATACCGGCGGTG-AGTGGCTCATT 1284
||| ||||| |||| | | ||| |||||| | | | | || || ||||| ||
Sbjct 1671 AAATCTCCACAATGTT------CTGCGTGTGTGCCGC--CTGTCCCTGCAGCGGCTCGTT 1620
Query 1285 TAACAGGGCGTGCATGGTCGCCCAGGCGAGGTCGGCGTGGCTGGCTTCCTCGCTGCGGCT 1344
| ||| |||||||||||||||||||| | ||| |||||||| ||||||||||||||||
Sbjct 1619 TGCCAGCGCGTGCATGGTCGCCCAGGCTAAATCGCCGTGGCTGACTTCCTCGCTGCGGCT 1560
Query 1345 GGCCTCATAGGTGGCGCTGCGTCCGCTGCTGGTCATGGTCTTGCGGATAGCCATAAACGA 1404
|| |||||||| | | | |||||| || ||| |||||||||| |||||| ||
Sbjct 1559 GGTTTCATAGGTCGGACGGTTGCCGCTGGCCGTGGTGGCTTTGCGGATAGACATAAATGA 1500
Query 1405 GCTG-GTGATGTCGGTGGCGCTGACGTCATATTCCAGACAGCCACGGCGGATGACGTCTT 1463
||| | ||||||| | |||| ||||| | ||||| | || | | |||| ||| |
Sbjct 1499 -CTGCGCGATGTCGAGGTGGCTGGCGTCAAACTCCAGCCGCCCGCTGGCGATGGTGTCGT 1441
Query 1464 TTGCCTTGAGCACCATTGCGGTTTTCATTTCCGGCGTGTAGCGGATATCGCGCGCG-GCG 1522
||||| ||||||| ||| |||||| | ||| | ||| | || | | |||
Sbjct 1440 AAGCCTTCAGCACCAGGGCGTTTTTCACGTTCGGGTTATAGACAAACTCCTTCACCTGCG 1381
Query 1523 GGATAGAACGAGCGCACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATACCG 1582
||| |||| | || || | | ||||| | |||| |||||||| || || |||
Sbjct 1380 GGA-AGAAGGCTTTGACATTCTCGTATACGCCAAGCCCGACGCCGGTGGAGTCGATGCCG 1322
Query 1583 ATGTATTCGACGTTGTATTTTTCGGTGAGTTTGCGGATGGATTCCGCCTGAGTGGCAAAG 1642
|| || |||||| || | | || || | | ||||| || ||||| | |||
Sbjct 1321 ATATAGGTGACGTTATACTGCTGCGTCAGCGTCCTGATGGCGTCAGCCTGCGCCCGGAAG 1262
Query 1643 TCCATGCCTTTCCACTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACCGGC 1702
||||| || |||||||||||||||||| || | ||| ||||| || | ||| | |||
Sbjct 1261 TCCATCCCGCGCCACTGGTGACGCTCAAGGATGCGGAACTTGCCGCCCGGCACGGCAGGC 1202
Query 1703 GGTGCCAGTACCACGCATCCGGCGCTGTCGCCA--CGGTGTGAC-------GGGTCGTAA 1753
||||||| ||||||||||||||||||||||| | | || | ||||||||
Sbjct 1201 GGTGCCATGACCACGCATCCGGCGCTGTCGCCGTTCTGCGTTCCCTTCGCGGGGTCGTAG 1142
Query 1754 CCAATCCAGACCGGGCGGGAGCCGAACGGATTGGCG----GCAAACGGCGCATAGTCTTC 1809
|| ||||| || |||||||||| ||| || | || | || ||||
Sbjct 1141 CCGATCCACACTTCTTTCCAGCCGAACGG----GCGCAGCGCCAGCGCCTCAAAGTCGGT 1086
Query 1810 CCATTCTTCC-AGCGTGTCGACCATGCAGCGTTGCAGCTCCTCGAACGGGAATACCGACG 1868
||| ||||| ||| |||| |||||||| |||||| | | | ||||||||||||
Sbjct 1085 CCAGACTTCCCAGC-TGTCCACCATGCATTTCTGCAGCATGGCCAGCTGGAATACCGACG 1027
Query 1869 CCTTGTCGTCAACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGC 1928
|| ||||| | ||| | ||||| | |||||| | |||| || | ||||| |||
Sbjct 1026 CCAGATCGTCCATAAAGACGCACATCAGCAGGTTCTGGTAATCCTCCGGGCTGTAG-CGC 968
Query 1929 GTTTA-AGCTGCTCAATGTCGAACAATGTGCAGCCACCTTTCAGGGCGTCCTCAATGGTG 1987
|| |||||||| | ||| |||| ||||| || || || || |||| ||||
Sbjct 967 GTGCGCAGCTGCTCCAGGTCAAACAGGTCACAGCCGCCGCGCACCGCATCTTCAACGGTG 908
Query 1988 ACAATCTGCCGCCACTGGCCGTCCGCACAGAGAAGACCTCCGGCAAGGGCGTTATGACTG 2047
|| ||||| || |||||||||| | ||||| |||| |||| || | | ||| |||
Sbjct 907 ACGATCTGGCGAAACTGGCCGTCTTCGCAGAGGCGACCGGCGGCCAGTGACTGATGGCTG 848
Query 2048 ACGTCGATTTCCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTAAACAGTTCACCGGAC 2107
| ||| || || || || || || |||| || ||| ||| ||| | |||||||
Sbjct 847 AGGTCAATATCAACCCGGTCAGCTT---TGGCCCGGCCCTTGTTGAACTGCGAACCGGAC 791
Query 2108 CAGAACGGATAGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGAGCGCAGG 2167
||||||||||||||| ||||| || ||||||||||||| || ||||| ||||
Sbjct 790 CAGAACGGATAGGCGCTGTGCGTGAGGCTGGACGGGGTGGAAAAGTAGGTTTCGCGCCAC 731
Query 2168 TGACTCTGTG-AG-GCCATACCTGATGCCACCTTACGCAGTACCTGAAAATTCGGGATCC 2225
| || |||| || ||||| || || ||||| || ||||| ||||||| ||||||||||
Sbjct 730 TT-CT-TGTGCAGCGCCATGCCGGACGCCACTTTCTGCAGTTCCTGAAACTTCGGGATCC 673
Query 2226 AGAAAATCTCGTCGACGTACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGAGTTGGTGC 2285
||||| || || | |||||| | ||||| || |||||| |||||| || ||||||||
Sbjct 672 AGAAATATTCATCCAGGTACAGATTGCCGTGATAGCTCTGCGCGGTGCGGGCGTTGGTGC 613
Query 2286 CGAGAAAAATCAGTTTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAA 2345
| || ||| ||| || |||||| || | | || ||||||| || ||||||| |
Sbjct 612 CCAGGAAATACAGGCACGCACCGTTACTGAGC--GTCA-TCGGGTCGCCCTTCAGGTCTA 556
Query 2346 CGTCAACCAGCCGGGCAAAGGCGATGATGTATTCACGGAACACATACGCCTGCGTTTTAC 2405
|||| ||| |||||||| | |||||||| | ||| || | |||||||| ||||
Sbjct 555 CGTCCACCTCGCGGGCAAATTCAATGATGTACTGCTTGAAGACGTGCGCCTGCGCCTTAC 496
Query 2406 TGGCCGACAGAAAAATCTGGTTATGACCGGTTTTCAGGGCGCGCAGCAGCGCCTCGCGGG 2465
|||| || || || ||||| || | ||||| |||| || | ||||||||||||||
Sbjct 495 TGGCTGAAAGGAATATCTGATTGCGCCCGGTGGTCAGCGCATCGATCAGCGCCTCGCGGG 436
Query 2466 AAAAATAAAACGTCGCGCCAATCTGGCGGGATTTCAGGATATCGCGGATGCGGTGCTCAA 2525
|||| | || || || ||||||||||| || ||||| | | ||||| | || || |
Sbjct 435 CAAAAAAGAAGGTGGCCCCAATCTGGCGCGACTTCAGCAGGTTGCGGACGGAGTACTTAT 376
Query 2526 GCCCGGCGCGATACCAGTGCAACTGATATTCGAAAGACTGCTCAAAGAAAATCTGCTCCA 2585
|||||| |||| || ||| || |||| | | ||||| || || ||
Sbjct 375 TCCCGGCCTCCCACCACTGGCGCTGGTAGCCGAACATCGAGCCGTGGAAAACCTCCTGCA 316
Query 2586 GCTTTTCGATGGCCTCGTCACTGAAAAAATTCTTTTTCGGTTTGCGACGCCCGCCTTTGT 2645
|||| || || ||||| ||||| | ||||||| ||| |||| ||| ||||
Sbjct 315 GCTTCTCAATCTGTTCGTCGCTGAACAGGTTCTTTTCCGGGGGCTTACGCGGGCCCTTGT 256
Query 2646 TGCGGTTAGCGACGTTCGGATTAAGGTCTGCCTCGTTGCCGGTCTGACTGTAACGGTTGA 2705
||||||| | ||||||||||| ||||| || || |||||| | ||| | | ||
Sbjct 255 TGCGGTTCTCCACGTTCGGATTCAGGTCCGCTTCATTGCCGCCATTGCTGAATTTGCCGA 196
Query 2706 CCCGTGCCAGTCGTTCAATCTGGCGTCCGAGCAGGTCAATTTCCTTGAAGTCACCGCCGG 2765
||| || | || || ||| || | |||||||| |||||||||||||| ||
Sbjct 195 TCCGGGCATGGCGCTCGGACTGCCGCGCCAGCAGGTCGATTTCCTTGAAGTCCTTTCCTT 136
Query 2766 TTTTCTGCGGTTTGATGATGAGCTGG 2791
|||||| || ||||||||||||
Sbjct 135 CCTTCTGCTCCTTCATGATGAGCTGG 110
>seq69575
Length=1340
Score = 82.4 bits (90), Expect = 2e-11
Identities = 184/271 (68%), Gaps = 19/271 (7%)
Strand=Plus/Plus
Query 1515 GCGCGGCGGGATAGAACGAGCGCACGAGCTG--GAACACGCCGACACCGAGGCCGGTGGC 1572
|||| ||||| |||| |||| ||||| | || ||||| | || | ||||||| |
Sbjct 15 GCGCAGCGGGGAAGAATTTCAGCACAAGCTGATGTAC-CGCCG-CGCCAATGCCGGTGCC 72
Query 1573 ATCAATACCGATGTATTCGACGTTGTATTTTTCGGTGAGTTTGCGG---ATGGATTCCGC 1629
||| || |||| | | |||||||| | |||||| ||| || ||| |||
Sbjct 73 ATCGATGTCGATATGCTGCACGTTGTACATGCGGGTGAG---GCGCTCAATAAATTTCGC 129
Query 1630 CTGAGTGGCAAAGTCCATGCCTTTCCACTGGTGACGCTCAAGTATTCTGAATTTGCCACC 1689
||| |||| |||||||| | |||||||||||| | || | ||||||||| ||
Sbjct 130 CTGTTCTTCAAACTCCATGCCGCGCAGCTGGTGACGCTCGATTACGCGGAATTTGCCGCC 189
Query 1690 GGCCACCACCGGCGGTGCCAGTACCACGCATCCGGCGCTGTCGCC----ACGGTGTGAC- 1744
|| |||| |||||| | || | || |||||||||||||| | ||| ||
Sbjct 190 GGGTACCAGCGGCGGCGAGAGGATGACAAGACCGGCGCTGTCGCCTTTGTCACTGTTACC 249
Query 1745 ----GGGTCGTAACCAATCCAGACCGGGCGG 1771
|| ||||| ||||||||||| ||||||
Sbjct 250 GTTGGGATCGTACCCAATCCAGACAGGGCGG 280
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 104359681704840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |