Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq280 98.7 7e-16
seq21746 86.0 4e-12
seq322 86.0 4e-12
>seq280
Length=341618
Score = 98.7 bits (108), Expect = 7e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972
|||||||| || || ||| ||||| || || || || || || | || |||
Sbjct 105131 ACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAGGTGCGGCCGTCTTCC 105190
Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032
|||||||| || || || ||||| ||||| || || |||| | |||||||||||| |
Sbjct 105191 AATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCTTGA 105250
Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092
|| || ||||| | | | || |||| |||||| || || | || || ||||||
Sbjct 105251 ATCTTGGCCTTGACGTTTTCGATGGTGTCTGACGGCTCAACCTCCAAGGTGATGGTTTTA 105310
Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| |||| |||||||| || ||||||||
Sbjct 105311 CCAGTTAGGGTCTTCACGAAGATTTGCAT 105339
Score = 95.1 bits (104), Expect = 9e-15
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971
||||||||| || || || || |||||||| || ||| || ||| | || ||
Sbjct 104674 CACCAAATGGAGAGTCGATTCCTTCTGAATATTGTAGTCGGACAAAGTACGGCCGTCTTC 104733
Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031
||| ||||| || ||||| ||||| || || || || |||| | |||||| |||||
Sbjct 104734 CAACTGTTTACCGGCAAAAATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTATCCTG 104793
Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091
||||| ||| || | | | || |||| |||||| || || | || || |||||
Sbjct 104794 GATTTTGGCTTTAACATTTTCGATGGTGTCTGACGGCTCAACCTCCAAGGTGATGGTTTT 104853
Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|||||| | |||||||| || || |||||
Sbjct 104854 ACCGGTCAGTGTCTTCACGAAGATCTGCAT 104883
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972
|||| ||| || || ||| ||||| || || |||||| || || | || |||
Sbjct 106499 ACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCC 106558
Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032
|||||||| || ||||| || || |||||||| || | || | ||| ||||| ||| |
Sbjct 106559 AATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGGAATACCCTCTTTGTCTTGA 106618
Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092
|| || ||| || | ||| |||||| | || || || || | || || || ||
Sbjct 106619 ATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTTG 106678
Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| || ||||||||||| || ||||||||
Sbjct 106679 CCAGTCAAAGTCTTCACGAAGATTTGCAT 106707
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972
|||| ||| || || ||| ||||| || || |||||| || || | || |||
Sbjct 114745 ACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCC 114804
Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032
|||||||| || ||||| || || |||||||| || | || | ||| ||||| ||| |
Sbjct 114805 AATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGGAATACCCTCTTTGTCTTGA 114864
Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092
|| || ||| || | ||| |||||| | || || || || | || || || ||
Sbjct 114865 ATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTTG 114924
Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| || ||||||||||| || ||||||||
Sbjct 114925 CCAGTCAAAGTCTTCACGAAGATTTGCAT 114953
>seq21746
Length=7614
Score = 86.0 bits (94), Expect = 4e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969
|||||||| || || || ||| |||||||| || || ||| || ||| ||||
Sbjct 2407 AACACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGACAAAGTACGACCATCT 2348
Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029
|||||||| || || || || ||||| ||||| || || | |||| |||||||||||||
Sbjct 2347 TCCAATTGCTTGCCGGCGAAAATCAAACGTTGTTGATCTGGTGGTATACCTTCTTTATCT 2288
Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089
||||| ||||| | | | ||| || | ||||| || || | || || ||
Sbjct 2287 TGGATTTTAGCCTTGACATTTTCGATAGTGTCAGAAGGCTCGACCTCCAAAGTGATGGTC 2228
Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| || || | || || || || || |||||
Sbjct 2227 TTGCCCGTAAGTGTTTTGACGAAAATCTGCAT 2196
>seq322
Length=316913
Score = 86.0 bits (94), Expect = 4e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972
|| ||||||| || || ||||||||||| |||||| ||| ||| |||| ||
Sbjct 56220 ACTAAATGTAAAGTAGATTCCTTTTGAATATTGTAATCGGCTAAGGTTCGCCCATCTTCT 56279
Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032
||||| |||||||| || || | || || || || |||| | ||||| || ||| |
Sbjct 56280 AATTGCTTTCCTGCGAAAATTAGGCGCTGTTGATCTGGAGGGATCCCTTCCTTGTCTTGA 56339
Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092
||||| || || ||| ||||| | ||||| || || | ||||| || ||
Sbjct 56340 ATTTTCGCCTTAACATGCTCAATTGTATCCGAAGGCTCAACCTCAAGAGTAATAGTCTTG 56399
Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATG 44122
|| |||| ||||| || || |||||||||
Sbjct 56400 CCCGTTAGGGTCTTAACGAAAATTTGCATG 56429
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354402851747160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |