Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq280 98.7 7e-16 seq21746 86.0 4e-12 seq322 86.0 4e-12 >seq280 Length=341618 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| || || ||| ||||| || || || || || || | || ||| Sbjct 105131 ACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAGGTGCGGCCGTCTTCC 105190 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| || || || ||||| ||||| || || |||| | |||||||||||| | Sbjct 105191 AATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCTTGA 105250 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || ||||| | | | || |||| |||||| || || | || || |||||| Sbjct 105251 ATCTTGGCCTTGACGTTTTCGATGGTGTCTGACGGCTCAACCTCCAAGGTGATGGTTTTA 105310 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || |||| |||||||| || |||||||| Sbjct 105311 CCAGTTAGGGTCTTCACGAAGATTTGCAT 105339 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||||||| || || || || |||||||| || ||| || ||| | || || Sbjct 104674 CACCAAATGGAGAGTCGATTCCTTCTGAATATTGTAGTCGGACAAAGTACGGCCGTCTTC 104733 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 ||| ||||| || ||||| ||||| || || || || |||| | |||||| ||||| Sbjct 104734 CAACTGTTTACCGGCAAAAATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTATCCTG 104793 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||||| ||| || | | | || |||| |||||| || || | || || ||||| Sbjct 104794 GATTTTGGCTTTAACATTTTCGATGGTGTCTGACGGCTCAACCTCCAAGGTGATGGTTTT 104853 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||| | |||||||| || || ||||| Sbjct 104854 ACCGGTCAGTGTCTTCACGAAGATCTGCAT 104883 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||| ||| || || ||| ||||| || || |||||| || || | || ||| Sbjct 106499 ACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCC 106558 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| || ||||| || || |||||||| || | || | ||| ||||| ||| | Sbjct 106559 AATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGGAATACCCTCTTTGTCTTGA 106618 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || ||| || | ||| |||||| | || || || || | || || || || Sbjct 106619 ATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTTG 106678 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || ||||||||||| || |||||||| Sbjct 106679 CCAGTCAAAGTCTTCACGAAGATTTGCAT 106707 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||| ||| || || ||| ||||| || || |||||| || || | || ||| Sbjct 114745 ACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCC 114804 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| || ||||| || || |||||||| || | || | ||| ||||| ||| | Sbjct 114805 AATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGGAATACCCTCTTTGTCTTGA 114864 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || ||| || | ||| |||||| | || || || || | || || || || Sbjct 114865 ATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTTG 114924 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || ||||||||||| || |||||||| Sbjct 114925 CCAGTCAAAGTCTTCACGAAGATTTGCAT 114953 >seq21746 Length=7614 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 |||||||| || || || ||| |||||||| || || ||| || ||| |||| Sbjct 2407 AACACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGACAAAGTACGACCATCT 2348 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 |||||||| || || || || ||||| ||||| || || | |||| ||||||||||||| Sbjct 2347 TCCAATTGCTTGCCGGCGAAAATCAAACGTTGTTGATCTGGTGGTATACCTTCTTTATCT 2288 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||||| ||||| | | | ||| || | ||||| || || | || || || Sbjct 2287 TGGATTTTAGCCTTGACATTTTCGATAGTGTCAGAAGGCTCGACCTCCAAAGTGATGGTC 2228 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || | || || || || || ||||| Sbjct 2227 TTGCCCGTAAGTGTTTTGACGAAAATCTGCAT 2196 >seq322 Length=316913 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 || ||||||| || || ||||||||||| |||||| ||| ||| |||| || Sbjct 56220 ACTAAATGTAAAGTAGATTCCTTTTGAATATTGTAATCGGCTAAGGTTCGCCCATCTTCT 56279 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 ||||| |||||||| || || | || || || || |||| | ||||| || ||| | Sbjct 56280 AATTGCTTTCCTGCGAAAATTAGGCGCTGTTGATCTGGAGGGATCCCTTCCTTGTCTTGA 56339 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| || || ||| ||||| | ||||| || || | ||||| || || Sbjct 56340 ATTTTCGCCTTAACATGCTCAATTGTATCCGAAGGCTCAACCTCAAGAGTAATAGTCTTG 56399 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || |||| ||||| || || ||||||||| Sbjct 56400 CCCGTTAGGGTCTTAACGAAAATTTGCATG 56429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354402851747160