Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq81708 111 2e-19 seq85787 91.5 2e-13 >seq81708 Length=1085 Score = 111 bits (122), Expect = 2e-19 Identities = 138/188 (73%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 65939 TTAAAGGGATTGTGTGAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGC 65998 ||| ||| || || || || || || || || || || || ||||| || || | || Sbjct 238 TTACAGGCTTTCGGTAAATGTACGAGTAATAACATCACGCTGCTGCTCTGGCGTCAGCGC 297 Query 65999 ATTAAAGCGTACGGCATAACCGGAAACACGGATGGTTAGTTGGGGATATTTTTCTGGA-- 66056 |||||||| |||||||| |||||||| || ||||| | || ||||||||||| ||| Sbjct 298 GTTAAAGCGCACGGCATAGCCGGAAACGCGAATGGTCAACTGTGGATATTTTTCCGGATG 357 Query 66057 -TTAACGATTGCATCTTCCAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACC 66115 || ||| |||||||||| || | || || || |||||||| || |||||||| Sbjct 358 GTTCACG---GCATCTTCCAACGTTTCACGACGCAGTACGTTTACGTTCAGGTGCTGACC 414 Query 66116 ACCTTCAA 66123 |||||||| Sbjct 415 ACCTTCAA 422 >seq85787 Length=1013 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/190 (71%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 65946 GATTGTGTGAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGCATTAAAG 66005 || || |||||||| || || ||||| || || ||||| ||| | | || ||| Sbjct 596 GACTGGGTGAAAGTACGTGTAATTACATCTTTCTGCTGCTCTTTAGTGAGCGAGTTGAAG 655 Query 66006 CGTACGGCATAACCGGAAACACGGATGGTTAGTTGGGGATATTTTTCTGGATTAACGATT 66065 ||||| ||||| || ||||| |||||||| || || |||||||| || |||| | || Sbjct 656 CGTACAGCATAGCCAGAAACGCGGATGGTCAGCTGCGGATATTTCTCCGGATGTTCCATG 715 Query 66066 GCATCTTCCAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACCACCTTCAACA 66125 ||||| ||| | | || | | || || ||||| ||||| ||||||||||| | Sbjct 716 GCATCCAACAGCATCTCACGATTCATTACGTTGACGTTCAGATGTTGACCACCTTCGA-T 774 Query 66126 GTTGGCTCCG 66135 ||||||| || Sbjct 775 GTTGGCTTCG 784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554761533393200