Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_005137.2
Length=131160
Score E
Sequences producing significant alignments: (Bits) Value
seq280 96.9 3e-15
seq21746 84.2 2e-11
seq4530 84.2 2e-11
seq322 84.2 2e-11
>seq280
Length=341618
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059
|||| ||| |||||||| || ||||| |||||||||||| || || ||||||
Sbjct 106499 ACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCC 106558
Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119
||||||||||| ||| | || | | || ||||| || | || |||||||| |
Sbjct 106559 AATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGGAATACCCTCTTTGTCTTGA 106618
Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179
|| || ||| || | ||| || |||| ||||| |||| || ||||| |||
Sbjct 106619 ATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTTG 106678
Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATTTTTAAA 20215
|| ||||| || || || || |||||||||||| ||
Sbjct 106679 CCAGTCAAAGTCTTCACGAAGATTTGCATTTTTGAA 106714
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059
|||| ||| |||||||| || ||||| |||||||||||| || || ||||||
Sbjct 114745 ACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCC 114804
Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119
||||||||||| ||| | || | | || ||||| || | || |||||||| |
Sbjct 114805 AATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGGAATACCCTCTTTGTCTTGA 114864
Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179
|| || ||| || | ||| || |||| ||||| |||| || ||||| |||
Sbjct 114865 ATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTTG 114924
Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATTTTTAAA 20215
|| ||||| || || || || |||||||||||| ||
Sbjct 114925 CCAGTCAAAGTCTTCACGAAGATTTGCATTTTTGAA 114960
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059
|| ||||| || ||||| |||||||||||||| |||||| || || ||||||
Sbjct 106043 ACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCGGACAAGGTGCGGCCATCTTCG 106102
Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119
| || ||||| || | || | | ||||||||| || | ||||| || ||
Sbjct 106103 AGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCCTTATCTTGG 106162
Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179
||||| |||||| | | | || |||| |||||| |||| || |||||||||
Sbjct 106163 ATTTTGGCTTTCACATTTTCGATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTTTTG 106222
Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208
|| ||||| ||||| ||||| ||||||||
Sbjct 106223 CCAGTCAATGTTTTAACAAATATTTGCAT 106251
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059
|| ||||| || ||||| |||||||||||||| |||||| || || ||||||
Sbjct 114289 ACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCGGACAAGGTGCGGCCATCTTCG 114348
Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119
| || ||||| || | || | | ||||||||| || | ||||| || ||
Sbjct 114349 AGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCCTTATCTTGG 114408
Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179
||||| |||||| | | | || |||| |||||| |||| || |||||||||
Sbjct 114409 ATTTTGGCTTTCACATTTTCGATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTTTTG 114468
Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208
|| ||||| ||||| ||||| ||||||||
Sbjct 114469 CCAGTCAATGTTTTAACAAATATTTGCAT 114497
>seq21746
Length=7614
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055
||||||||| || || || || || ||||| |||||||| ||| || ||| | |||
Sbjct 2408 CAACACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGACAAAGTACGACCATC 2349
Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115
||||||||| ||||| || |||| | | |||||||| || | |||||||| ||
Sbjct 2348 TTCCAATTGCTTGCCGGCGAAAATCAAACGTTGTTGATCTGGTGGTATACCTTCTTTATC 2289
Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175
||||| || || | | | || || ||| || |||| || |||||
Sbjct 2288 TTGGATTTTAGCCTTGACATTTTCGATAGTGTCAGAAGGCTCGACCTCCAAAGTGATGGT 2229
Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211
||||| || | |||||||| ||||| ||||||||
Sbjct 2228 CTTGCCCGTAAGTGTTTTGACGAAAATCTGCATTTT 2193
>seq4530
Length=49833
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059
|| ||||||| |||||||| ||||| || |||||| || | | ||| |||||||
Sbjct 18515 ACTAAATGTAAAGTAGATTCCTTTTGAATATTGTAACCGGCTAAGGTTCGCCCATCTTCC 18456
Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119
||||||| || || |||| || | ||||||||| ||| | ||| | ||||| |
Sbjct 18455 TATTGTTTTCCTGCGAAAATTAGGCGCTGTTGATCTGGGGGGATCCCTCCCTTGTCTTGA 18396
Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179
|||||| ||||| || ||| | ||| ||| || || | ||||| || |||
Sbjct 18395 ATTTTTGCCTTCACATGCTCAATTGTATCCGAAGGCTCAACCTCAAGAGTAATAGTCTTG 18336
Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208
| || | || || || |||||||||||
Sbjct 18335 CGCGTTAGGGTCTTAACGAAAATTTGCAT 18307
>seq322
Length=316913
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059
|| ||||||| |||||||| ||||| || |||||| || | | ||| |||||||
Sbjct 38741 ACTAAATGTAAAGTAGATTCCTTTTGAATATTGTAACCGGCTAAGGTTCGCCCATCTTCC 38682
Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119
||||||| || || |||| || | ||||||||| ||| | ||| | ||||| |
Sbjct 38681 TATTGTTTTCCTGCGAAAATTAGGCGCTGTTGATCTGGGGGGATCCCTCCCTTGTCTTGA 38622
Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179
|||||| ||||| || ||| | ||| ||| || || | ||||| || |||
Sbjct 38621 ATTTTTGCCTTCACATGCTCAATTGTATCCGAAGGCTCAACCTCAAGAGTAATAGTCTTG 38562
Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208
| || | || || || |||||||||||
Sbjct 38561 CGCGTTAGGGTCTTAACGAAAATTTGCAT 38533
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419143993974270
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |