Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq280 96.9 3e-15 seq21746 84.2 2e-11 seq4530 84.2 2e-11 seq322 84.2 2e-11 >seq280 Length=341618 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||| ||| |||||||| || ||||| |||||||||||| || || |||||| Sbjct 106499 ACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCC 106558 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 ||||||||||| ||| | || | | || ||||| || | || |||||||| | Sbjct 106559 AATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGGAATACCCTCTTTGTCTTGA 106618 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || || ||| || | ||| || |||| ||||| |||| || ||||| ||| Sbjct 106619 ATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTTG 106678 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATTTTTAAA 20215 || ||||| || || || || |||||||||||| || Sbjct 106679 CCAGTCAAAGTCTTCACGAAGATTTGCATTTTTGAA 106714 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||| ||| |||||||| || ||||| |||||||||||| || || |||||| Sbjct 114745 ACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCC 114804 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 ||||||||||| ||| | || | | || ||||| || | || |||||||| | Sbjct 114805 AATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGGAATACCCTCTTTGTCTTGA 114864 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || || ||| || | ||| || |||| ||||| |||| || ||||| ||| Sbjct 114865 ATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTTG 114924 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATTTTTAAA 20215 || ||||| || || || || |||||||||||| || Sbjct 114925 CCAGTCAAAGTCTTCACGAAGATTTGCATTTTTGAA 114960 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 || ||||| || ||||| |||||||||||||| |||||| || || |||||| Sbjct 106043 ACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCGGACAAGGTGCGGCCATCTTCG 106102 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | || ||||| || | || | | ||||||||| || | ||||| || || Sbjct 106103 AGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCCTTATCTTGG 106162 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| |||||| | | | || |||| |||||| |||| || ||||||||| Sbjct 106163 ATTTTGGCTTTCACATTTTCGATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTTTTG 106222 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| ||||| ||||| |||||||| Sbjct 106223 CCAGTCAATGTTTTAACAAATATTTGCAT 106251 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 || ||||| || ||||| |||||||||||||| |||||| || || |||||| Sbjct 114289 ACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCGGACAAGGTGCGGCCATCTTCG 114348 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | || ||||| || | || | | ||||||||| || | ||||| || || Sbjct 114349 AGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCCTTATCTTGG 114408 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| |||||| | | | || |||| |||||| |||| || ||||||||| Sbjct 114409 ATTTTGGCTTTCACATTTTCGATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTTTTG 114468 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| ||||| ||||| |||||||| Sbjct 114469 CCAGTCAATGTTTTAACAAATATTTGCAT 114497 >seq21746 Length=7614 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||||||||| || || || || || ||||| |||||||| ||| || ||| | ||| Sbjct 2408 CAACACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGACAAAGTACGACCATC 2349 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||||||| ||||| || |||| | | |||||||| || | |||||||| || Sbjct 2348 TTCCAATTGCTTGCCGGCGAAAATCAAACGTTGTTGATCTGGTGGTATACCTTCTTTATC 2289 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 ||||| || || | | | || || ||| || |||| || ||||| Sbjct 2288 TTGGATTTTAGCCTTGACATTTTCGATAGTGTCAGAAGGCTCGACCTCCAAAGTGATGGT 2229 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 ||||| || | |||||||| ||||| |||||||| Sbjct 2228 CTTGCCCGTAAGTGTTTTGACGAAAATCTGCATTTT 2193 >seq4530 Length=49833 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 || ||||||| |||||||| ||||| || |||||| || | | ||| ||||||| Sbjct 18515 ACTAAATGTAAAGTAGATTCCTTTTGAATATTGTAACCGGCTAAGGTTCGCCCATCTTCC 18456 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 ||||||| || || |||| || | ||||||||| ||| | ||| | ||||| | Sbjct 18455 TATTGTTTTCCTGCGAAAATTAGGCGCTGTTGATCTGGGGGGATCCCTCCCTTGTCTTGA 18396 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 |||||| ||||| || ||| | ||| ||| || || | ||||| || ||| Sbjct 18395 ATTTTTGCCTTCACATGCTCAATTGTATCCGAAGGCTCAACCTCAAGAGTAATAGTCTTG 18336 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | || | || || || ||||||||||| Sbjct 18335 CGCGTTAGGGTCTTAACGAAAATTTGCAT 18307 >seq322 Length=316913 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 || ||||||| |||||||| ||||| || |||||| || | | ||| ||||||| Sbjct 38741 ACTAAATGTAAAGTAGATTCCTTTTGAATATTGTAACCGGCTAAGGTTCGCCCATCTTCC 38682 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 ||||||| || || |||| || | ||||||||| ||| | ||| | ||||| | Sbjct 38681 TATTGTTTTCCTGCGAAAATTAGGCGCTGTTGATCTGGGGGGATCCCTCCCTTGTCTTGA 38622 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 |||||| ||||| || ||| | ||| ||| || || | ||||| || ||| Sbjct 38621 ATTTTTGCCTTCACATGCTCAATTGTATCCGAAGGCTCAACCTCAAGAGTAATAGTCTTG 38562 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | || | || || || ||||||||||| Sbjct 38561 CGCGTTAGGGTCTTAACGAAAATTTGCAT 38533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419143993974270