Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_005340.1 Length=30636 Score E Sequences producing significant alignments: (Bits) Value seq52999 581 6e-162 >seq52999 Length=1923 Score = 581 bits (644), Expect = 6e-162 Identities = 1058/1533 (69%), Gaps = 29/1533 (2%) Strand=Plus/Minus Query 2012 AGAGGTTCGTTTAACAGGGCGTGCATGGTCGCCCATGCGATATCGGCGTGACTGGCTTCC 2071 || || |||||| ||| ||||||||||||||||| || | |||| |||| ||| ||||| Sbjct 1630 AGCGGCTCGTTTGCCAGCGCGTGCATGGTCGCCCAGGCTAAATCGCCGTGGCTGACTTCC 1571 Query 2072 TCGGTGCGGCTGGCCTCATAGGTAGCGCTGCGCCCGCTGCTGGTCATGGTTTTGCGGATG 2131 ||| ||||||||| |||||||| | | | |||||| || ||| ||||||||| Sbjct 1570 TCGCTGCGGCTGGTTTCATAGGTCGGACGGTTGCCGCTGGCCGTGGTGGCTTTGCGGATA 1511 Query 2132 GACATAAACGACTGCGTGACGTCG-GTTGCCCCGGCGTCGTATTCCAGACAGCCGC-GGC 2189 |||||||| ||||||| || |||| | || | |||||| | ||||| | |||| ||| Sbjct 1510 GACATAAATGACTGCGCGATGTCGAGGTGGCT-GGCGTCAAACTCCAGCCGCCCGCTGGC 1452 Query 2190 GAATGGTGTCTTTCGCCTTGAGCACCATTGCGGTTTTCATTTCTGGCGTGTA-ACGGATA 2248 || ||||||| | ||||| ||||||| ||| |||||| | || | || || | Sbjct 1451 GA-TGGTGTCGTAAGCCTTCAGCACCAGGGCGTTTTTCACGTTCGGGTTATAGACAAACT 1393 Query 2249 CCGCGAGCCGCCGGGTAGAATGAACGCACCAACTGGAATACACCGAGACCGAGGCCTGTT 2308 || | | || ||| |||| | || || | |||| || || |||| ||| || Sbjct 1392 CCTTCACCTGC-GGGAAGAAGGCTTTGACATTCTCGTATACGCCAAGCCCGACGCCGGTG 1334 Query 2309 GCGTCAATGCCGATGTATTCGACGTTGTATTTCTCAGTGAGCCTGCGGATGCCTTCTGCC 2368 | ||| |||||||| || |||||| || | || || ||| | | |||| | || ||| Sbjct 1333 GAGTCGATGCCGATATAGGTGACGTTATACTGCTGCGTCAGCGTCCTGATGGCGTCAGCC 1274 Query 2369 TGCGCGGCAAAGTCCATGCCTTTCCACTGGTGACGCTCCAGCATGCGAAACTTGCCACCC 2428 ||||| |||||||| || ||||||||||||||| || ||||| |||||||| ||| Sbjct 1273 TGCGCCCGGAAGTCCATCCCGCGCCACTGGTGACGCTCAAGGATGCGGAACTTGCCGCCC 1214 Query 2429 GAAACCACCGGCGGCGCGAGTACGACACATCCGGCACTGTCGCCGGTGTGGGAC------ 2482 | || | ||||| || | || || |||||||| ||||||||| | || | Sbjct 1213 GGCACGGCAGGCGGTGCCATGACCACGCATCCGGCGCTGTCGCCGTTCTGCGTTCCCTTC 1154 Query 2483 ---GGGTCGTAGCCAATCCAGACCGGGCGTGAGCCGAATGGATGGTCGGCGAACGGGGCG 2539 ||||||||||| ||||| || ||||||| || | || | || | Sbjct 1153 GCGGGGTCGTAGCCGATCCACACTTCTTTCCAGCCGAACGGGCGCAGCGCCAGCGCCTCA 1094 Query 2540 AAGTCCTCCCATGTTTCCATCACGTCGACCATGCAGCGCTGCAGCTCCTCGAACGGGAAT 2599 ||||| ||| |||| ||| |||||||| ||||||| | | | ||||| Sbjct 1093 AAGTCGGTCCAGACTTCCCAGCTGTCCACCATGCATTTCTGCAGCATGGCCAGCTGGAAT 1034 Query 2600 ACAGATGCCTTATCGTCGACAAACTCGCACATAAACAGGTTTTTAAAGTCCTCATCACTG 2659 || || ||| |||||| | ||| ||||||| | |||||| | | ||||| ||| Sbjct 1033 ACCGACGCCAGATCGTCCATAAAGACGCACATCAGCAGGTTCTGGTAATCCTCCGGGCTG 974 Query 2660 TTTTCGCGTCTG-AGCTGGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAGGGCGTCCTC 2718 | ||||| | ||||| || ||||| |||||| ||||| ||| | || || || Sbjct 973 TAG-CGCGTGCGCAGCTGCTCCAGGTCAAACAGGTCACAGCCGCCGCGCACCGCATCTTC 915 Query 2719 AATAGTGACAATCTGCCGCCACTGTCCGTCAGCGCAAAGAAGCCCACCGGCGAGCGCGCT 2778 || ||||| ||||| || |||| ||||| |||| || | || |||| || | || Sbjct 914 AACGGTGACGATCTGGCGAAACTGGCCGTCTTCGCAGAGGCGACCGGCGGCCAGTGA-CT 856 Query 2779 G-TGACTGATGTCGATTTCGATGCGGTCAGCAGCACTGGCGCGCCCCTTGTTGAACAGCT 2837 | || |||| ||| || || | |||||||| |||| || |||||||||||| || Sbjct 855 GATGGCTGAGGTCAATATCAACCCGGTCAGCTT---TGGCCCGGCCCTTGTTGAACTGCG 799 Query 2838 CGCCAGACCAGAAGGGATAAGCGCCGTGCGCCAGCGTGGAAGGTGTCGAAAAGTAAGTTG 2897 || |||||||| ||||| |||| ||||| || |||| || || |||||||| ||| Sbjct 798 AACCGGACCAGAACGGATAGGCGCTGTGCGTGAGGCTGGACGGGGTGGAAAAGTAGGTTT 739 Query 2898 AGCGCAGATGCTTTTGCGAGGCCATGCCCGAGGCGACTTTGCGCAGCTTCTGAAAATTCG 2957 |||| | ||| ||| |||||||| || || ||||| |||| | |||||| |||| Sbjct 738 CGCGCCACTTCTTGTGCAGCGCCATGCCGGACGCCACTTTCTGCAGTTCCTGAAACTTCG 679 Query 2958 GGATCCAGAATATTTCATCGACATACAGGTCGCCGTTATGGCTCTGCGCGGTGTTGGAAT 3017 |||||||||| |||||| | ||||| | ||||| || ||||||||||||| || | Sbjct 678 GGATCCAGAAATATTCATCCAGGTACAGATTGCCGTGATAGCTCTGCGCGGTGCGGGCGT 619 Query 3018 TGGTGCCGAGAAAAATCAGCTTTGCGCCGTTGTTGCCGATGACAATCGGGTCGCCAGTCA 3077 ||||||| || ||| ||| || || ||| | || ||||||||||| ||| Sbjct 618 TGGTGCCCAGGAAATACAGGCACGCACC---GTTACTGAGCGTCATCGGGTCGCCCTTCA 562 Query 3078 GGTCGACGTCAACCAGTCGCGCAAACTGGATGATGTATTCCCGGAACACGTAAGCCTGCG 3137 |||| ||||| ||| || ||||| | |||||||| | | ||| |||| ||||||| Sbjct 561 GGTCTACGTCCACCTCGCGGGCAAATTCAATGATGTACTGCTTGAAGACGTGCGCCTGCG 502 Query 3138 TTTTACTGGCCGACAGAAAAATCTGGTTATGGCCGGTCTTGAGCGCGCGCAGCAGTGCCT 3197 |||||||| || || || ||||| || | ||||| | ||||| | ||| |||| Sbjct 501 CCTTACTGGCTGAAAGGAATATCTGATTGCGCCCGGTGGTCAGCGCATCGATCAGCGCCT 442 Query 3198 CGCGGGAAAAGTAGAACGTCGCGCCAATCTGGCGGGATTTGAGAATATCGCGAATACGGT 3257 |||||| ||| |||| || || ||||||||||| || || || | | ||| |||| Sbjct 441 CGCGGGCAAAAAAGAAGGTGGCCCCAATCTGGCGCGACTTCAGCAGGTTGCG--GACGGA 384 Query 3258 GCGCCAGT--CCTGCCCGGTACCACTGCAACTGGTATTCGAAAGACTGGTCGAAGAAAAT 3315 | | | || ||| ||||||| |||||| |||| | | || ||||| Sbjct 383 GTACTTATTCCCGGCCTCCCACCACTGGCGCTGGTAGCCGAACATCGAGCCGTGGAAAAC 324 Query 3316 TTCTTCCAGCTTTGCGACAGCCTCATCGCTGAAAAAGTTCTTTTTCGGCCTCTTACGCTC 3375 || | |||||| | | || |||||||| | |||||||| ||| ||||||| Sbjct 323 CTCCTGCAGCTTCTCAATCTGTTCGTCGCTGAACAGGTTCTTTTCCGGGGGCTTACGCGG 264 Query 3376 CCCCTTGTTACGGTTGGCAACGTTGGGGTTAAGGTCGGCCTCGTTGCCGGTCTGGCTGTA 3435 |||||||| ||||| | ||||| || || ||||| || || |||||| | |||| | Sbjct 263 GCCCTTGTTGCGGTTCTCCACGTTCGGATTCAGGTCCGCTTCATTGCCGCCATTGCTGAA 204 Query 3436 GCGGTTGACGCGCGCCAGTCGCTCAATCTGCCGCCCGAGCAGGTCAATCTCTTTGAAGTC 3495 | || || || | ||||| ||||||| | |||||||| || || |||||||| Sbjct 203 TTTGCCGATCCGGGCATGGCGCTCGGACTGCCGCGCCAGCAGGTCGATTTCCTTGAAGTC 144 Query 3496 GCCGCCTGACTTTTGCGGCTTGGCGATGAGCTG 3528 ||| ||| ||| ||| ||||||||| Sbjct 143 CTTTCCTTCCTTCTGCTCCTTCATGATGAGCTG 111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97812826710920