Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_005340.1
Length=30636
Score E
Sequences producing significant alignments: (Bits) Value
seq52999 581 6e-162
>seq52999
Length=1923
Score = 581 bits (644), Expect = 6e-162
Identities = 1058/1533 (69%), Gaps = 29/1533 (2%)
Strand=Plus/Minus
Query 2012 AGAGGTTCGTTTAACAGGGCGTGCATGGTCGCCCATGCGATATCGGCGTGACTGGCTTCC 2071
|| || |||||| ||| ||||||||||||||||| || | |||| |||| ||| |||||
Sbjct 1630 AGCGGCTCGTTTGCCAGCGCGTGCATGGTCGCCCAGGCTAAATCGCCGTGGCTGACTTCC 1571
Query 2072 TCGGTGCGGCTGGCCTCATAGGTAGCGCTGCGCCCGCTGCTGGTCATGGTTTTGCGGATG 2131
||| ||||||||| |||||||| | | | |||||| || ||| |||||||||
Sbjct 1570 TCGCTGCGGCTGGTTTCATAGGTCGGACGGTTGCCGCTGGCCGTGGTGGCTTTGCGGATA 1511
Query 2132 GACATAAACGACTGCGTGACGTCG-GTTGCCCCGGCGTCGTATTCCAGACAGCCGC-GGC 2189
|||||||| ||||||| || |||| | || | |||||| | ||||| | |||| |||
Sbjct 1510 GACATAAATGACTGCGCGATGTCGAGGTGGCT-GGCGTCAAACTCCAGCCGCCCGCTGGC 1452
Query 2190 GAATGGTGTCTTTCGCCTTGAGCACCATTGCGGTTTTCATTTCTGGCGTGTA-ACGGATA 2248
|| ||||||| | ||||| ||||||| ||| |||||| | || | || || |
Sbjct 1451 GA-TGGTGTCGTAAGCCTTCAGCACCAGGGCGTTTTTCACGTTCGGGTTATAGACAAACT 1393
Query 2249 CCGCGAGCCGCCGGGTAGAATGAACGCACCAACTGGAATACACCGAGACCGAGGCCTGTT 2308
|| | | || ||| |||| | || || | |||| || || |||| ||| ||
Sbjct 1392 CCTTCACCTGC-GGGAAGAAGGCTTTGACATTCTCGTATACGCCAAGCCCGACGCCGGTG 1334
Query 2309 GCGTCAATGCCGATGTATTCGACGTTGTATTTCTCAGTGAGCCTGCGGATGCCTTCTGCC 2368
| ||| |||||||| || |||||| || | || || ||| | | |||| | || |||
Sbjct 1333 GAGTCGATGCCGATATAGGTGACGTTATACTGCTGCGTCAGCGTCCTGATGGCGTCAGCC 1274
Query 2369 TGCGCGGCAAAGTCCATGCCTTTCCACTGGTGACGCTCCAGCATGCGAAACTTGCCACCC 2428
||||| |||||||| || ||||||||||||||| || ||||| |||||||| |||
Sbjct 1273 TGCGCCCGGAAGTCCATCCCGCGCCACTGGTGACGCTCAAGGATGCGGAACTTGCCGCCC 1214
Query 2429 GAAACCACCGGCGGCGCGAGTACGACACATCCGGCACTGTCGCCGGTGTGGGAC------ 2482
| || | ||||| || | || || |||||||| ||||||||| | || |
Sbjct 1213 GGCACGGCAGGCGGTGCCATGACCACGCATCCGGCGCTGTCGCCGTTCTGCGTTCCCTTC 1154
Query 2483 ---GGGTCGTAGCCAATCCAGACCGGGCGTGAGCCGAATGGATGGTCGGCGAACGGGGCG 2539
||||||||||| ||||| || ||||||| || | || | || |
Sbjct 1153 GCGGGGTCGTAGCCGATCCACACTTCTTTCCAGCCGAACGGGCGCAGCGCCAGCGCCTCA 1094
Query 2540 AAGTCCTCCCATGTTTCCATCACGTCGACCATGCAGCGCTGCAGCTCCTCGAACGGGAAT 2599
||||| ||| |||| ||| |||||||| ||||||| | | | |||||
Sbjct 1093 AAGTCGGTCCAGACTTCCCAGCTGTCCACCATGCATTTCTGCAGCATGGCCAGCTGGAAT 1034
Query 2600 ACAGATGCCTTATCGTCGACAAACTCGCACATAAACAGGTTTTTAAAGTCCTCATCACTG 2659
|| || ||| |||||| | ||| ||||||| | |||||| | | ||||| |||
Sbjct 1033 ACCGACGCCAGATCGTCCATAAAGACGCACATCAGCAGGTTCTGGTAATCCTCCGGGCTG 974
Query 2660 TTTTCGCGTCTG-AGCTGGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAGGGCGTCCTC 2718
| ||||| | ||||| || ||||| |||||| ||||| ||| | || || ||
Sbjct 973 TAG-CGCGTGCGCAGCTGCTCCAGGTCAAACAGGTCACAGCCGCCGCGCACCGCATCTTC 915
Query 2719 AATAGTGACAATCTGCCGCCACTGTCCGTCAGCGCAAAGAAGCCCACCGGCGAGCGCGCT 2778
|| ||||| ||||| || |||| ||||| |||| || | || |||| || | ||
Sbjct 914 AACGGTGACGATCTGGCGAAACTGGCCGTCTTCGCAGAGGCGACCGGCGGCCAGTGA-CT 856
Query 2779 G-TGACTGATGTCGATTTCGATGCGGTCAGCAGCACTGGCGCGCCCCTTGTTGAACAGCT 2837
| || |||| ||| || || | |||||||| |||| || |||||||||||| ||
Sbjct 855 GATGGCTGAGGTCAATATCAACCCGGTCAGCTT---TGGCCCGGCCCTTGTTGAACTGCG 799
Query 2838 CGCCAGACCAGAAGGGATAAGCGCCGTGCGCCAGCGTGGAAGGTGTCGAAAAGTAAGTTG 2897
|| |||||||| ||||| |||| ||||| || |||| || || |||||||| |||
Sbjct 798 AACCGGACCAGAACGGATAGGCGCTGTGCGTGAGGCTGGACGGGGTGGAAAAGTAGGTTT 739
Query 2898 AGCGCAGATGCTTTTGCGAGGCCATGCCCGAGGCGACTTTGCGCAGCTTCTGAAAATTCG 2957
|||| | ||| ||| |||||||| || || ||||| |||| | |||||| ||||
Sbjct 738 CGCGCCACTTCTTGTGCAGCGCCATGCCGGACGCCACTTTCTGCAGTTCCTGAAACTTCG 679
Query 2958 GGATCCAGAATATTTCATCGACATACAGGTCGCCGTTATGGCTCTGCGCGGTGTTGGAAT 3017
|||||||||| |||||| | ||||| | ||||| || ||||||||||||| || |
Sbjct 678 GGATCCAGAAATATTCATCCAGGTACAGATTGCCGTGATAGCTCTGCGCGGTGCGGGCGT 619
Query 3018 TGGTGCCGAGAAAAATCAGCTTTGCGCCGTTGTTGCCGATGACAATCGGGTCGCCAGTCA 3077
||||||| || ||| ||| || || ||| | || ||||||||||| |||
Sbjct 618 TGGTGCCCAGGAAATACAGGCACGCACC---GTTACTGAGCGTCATCGGGTCGCCCTTCA 562
Query 3078 GGTCGACGTCAACCAGTCGCGCAAACTGGATGATGTATTCCCGGAACACGTAAGCCTGCG 3137
|||| ||||| ||| || ||||| | |||||||| | | ||| |||| |||||||
Sbjct 561 GGTCTACGTCCACCTCGCGGGCAAATTCAATGATGTACTGCTTGAAGACGTGCGCCTGCG 502
Query 3138 TTTTACTGGCCGACAGAAAAATCTGGTTATGGCCGGTCTTGAGCGCGCGCAGCAGTGCCT 3197
|||||||| || || || ||||| || | ||||| | ||||| | ||| ||||
Sbjct 501 CCTTACTGGCTGAAAGGAATATCTGATTGCGCCCGGTGGTCAGCGCATCGATCAGCGCCT 442
Query 3198 CGCGGGAAAAGTAGAACGTCGCGCCAATCTGGCGGGATTTGAGAATATCGCGAATACGGT 3257
|||||| ||| |||| || || ||||||||||| || || || | | ||| ||||
Sbjct 441 CGCGGGCAAAAAAGAAGGTGGCCCCAATCTGGCGCGACTTCAGCAGGTTGCG--GACGGA 384
Query 3258 GCGCCAGT--CCTGCCCGGTACCACTGCAACTGGTATTCGAAAGACTGGTCGAAGAAAAT 3315
| | | || ||| ||||||| |||||| |||| | | || |||||
Sbjct 383 GTACTTATTCCCGGCCTCCCACCACTGGCGCTGGTAGCCGAACATCGAGCCGTGGAAAAC 324
Query 3316 TTCTTCCAGCTTTGCGACAGCCTCATCGCTGAAAAAGTTCTTTTTCGGCCTCTTACGCTC 3375
|| | |||||| | | || |||||||| | |||||||| ||| |||||||
Sbjct 323 CTCCTGCAGCTTCTCAATCTGTTCGTCGCTGAACAGGTTCTTTTCCGGGGGCTTACGCGG 264
Query 3376 CCCCTTGTTACGGTTGGCAACGTTGGGGTTAAGGTCGGCCTCGTTGCCGGTCTGGCTGTA 3435
|||||||| ||||| | ||||| || || ||||| || || |||||| | |||| |
Sbjct 263 GCCCTTGTTGCGGTTCTCCACGTTCGGATTCAGGTCCGCTTCATTGCCGCCATTGCTGAA 204
Query 3436 GCGGTTGACGCGCGCCAGTCGCTCAATCTGCCGCCCGAGCAGGTCAATCTCTTTGAAGTC 3495
| || || || | ||||| ||||||| | |||||||| || || ||||||||
Sbjct 203 TTTGCCGATCCGGGCATGGCGCTCGGACTGCCGCGCCAGCAGGTCGATTTCCTTGAAGTC 144
Query 3496 GCCGCCTGACTTTTGCGGCTTGGCGATGAGCTG 3528
||| ||| ||| ||| |||||||||
Sbjct 143 CTTTCCTTCCTTCTGCTCCTTCATGATGAGCTG 111
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 97812826710920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |