Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_005856.1
Length=94800
Score E
Sequences producing significant alignments: (Bits) Value
seq42150 533 9e-147
seq16149 114 8e-21
>seq42150
Length=2645
Score = 533 bits (590), Expect = 9e-147
Identities = 799/1127 (71%), Gaps = 6/1127 (1%)
Strand=Plus/Minus
Query 60030 ATAAATTCAATACGGTCAAAAACTGCTTTAGCAAAATCTTCCGCGGCAATTCGCGCGTTC 60089
|| ||||||||||| ||||| || ||||| || ||||| ||||| || ||||| ||
Sbjct 1624 ATGAATTCAATACGATCAAATACGGCTTTGGCGAAATCCTCCGCCGCTGAACGCGCATTT 1565
Query 60090 TTCAATGCATCAGCACTACCAACATACGTTGCCGGGTTAGCTGAAATAACAGTGTCAAAA 60149
|| || || || | || || ||||| |||| || || || || || || ||||||||
Sbjct 1564 TTTAAGGCCTCGGTGCTGCCCACATAGGTTGAGGGATTGGCAGAGATTACCGTGTCAAAC 1505
Query 60150 GACTCGCCGCAGCGTTCAAAACCGTCAAGGCGAGGGAG-GAAGACATCAAGCATATCCCC 60208
||||| || ||||| ||||| || || || || || | | || |||| |||||||| ||
Sbjct 1504 GACTCACCACAGCGCTCAAAGCCATCCAGACGCGGTAACGCAG-CATCCAGCATATCGCC 1446
Query 60209 ACCGAACACTTCTTTAGCCAGGCTATGGCAATACTTATGGTCTGCCTTGTTACTCAACTT 60268
|| || | ||||| |||||||| ||||| || ||||| || || ||| | |||
Sbjct 1445 GCCAAAAATCTCTTTTGCCAGGCTGTGGCACAGTTTGTGGTCGGCTTTATTAGAGAGCTT 1386
Query 60269 GGACATAAAACCAATGTTAGTC-GCAAGCTGGCACTCGCAGCCTTCATCCGAAATGAGTT 60327
||||||||||| || || | | |||| |||| | |||| || |||||
Sbjct 1385 TGACATAAAACCGATATTGCCCTGTAAGC-GGCAGGCTGCGCCTGACTCTTCAATGATGC 1327
Query 60328 TCACCAACTCAGGAAGGCGGGCAACGTATTTAAGCGATGAGTGGAAATCGACAGTTGCTG 60387
| || ||| || | || | | || || | || ||||||||||| || || |
Sbjct 1326 CAATCAGCTCCGGCAAACGCGTCAGATACTTTAACGTGGAGTGGAAATCCACCTGCGCGG 1267
Query 60388 GCGGCAGAGGTGTAAACAGTATATTGGCCGAGGCCAAAGCATTTTTCAGGAAGGCGTCAA 60447
| |||| || || | ||| | | | | ||| | || || ||||||||||| || |
Sbjct 1266 GGGGCACCGGCGTCATCAGCAGGTCTGAAGCGGCAATGGCGTTCTTCAGGAAGGCATCCA 1207
Query 60448 GGTGAGGACCACTATCAACGAGGATAAAGTCATAATCGCTCTTCAGCTTATCAATCACAT 60507
| || || || || || | | ||| ||||||||||| |||||||||| | | |||||
Sbjct 1206 GATGTGGGCCGCTGTCGATAAAGATGAAGTCATAATCTTTCTTCAGCTTGGCCACCACAT 1147
Query 60508 TTTCTTTCAGGACAGCATGGATGTTCTGACCCGGTAGATGCTCATTGCACAGCTCTCTCC 60567
|||| | |||||| || || || ||||| |||| | || || || |||||| |||
Sbjct 1146 TTTCATACAGGACCGCGTGAATATTCTGCTCCGGCAAGTGGGCAGCACAAAGCTCT-TCC 1088
Query 60568 AATCG-GATGCAATAAAGGCATCGTCAATCGACGCAGGCATAACGTCAACCCCAGGTACA 60626
| || || ||||||||||| || |||||||| || |||| || || || || || | |
Sbjct 1087 CAGCGCGAGGCAATAAAGGCGTCATCAATCGAAGCCGGCAGCACATCGACGCCGGGAATA 1028
Query 60627 ACAGAAGGAACAATAAACTCCTCTAACAGCTCTTCACGGCTTACATTCTGCAACATAGCC 60686
| || | ||| |||||||| | | ||||||||||||||| || || |||| |||||||
Sbjct 1027 ATCGACGAAACGATAAACTCATTGAGCAGCTCTTCACGGCTGACGTTTTGCAGCATAGCC 968
Query 60687 TGTGCAGATGTTGCGTTTACGATACCAATAGAGTGTTTATGGCTTAAAAACATCGTTGCT 60746
|| || | ||| || | || | || | || | | ||| | | ||||| || |||
Sbjct 967 TGGGCGGCTGTCGCTTCCACTAATCCCACTGAACGCTGATGATTCAGGAACATGGTGGCT 908
Query 60747 GAAGATTGCGGATCAAGGTCAATAACCAGAATCCTTAAATCCTCCATAAGAAGATGAGGG 60806
||||||||||| ||||| || || |||||||| | ||||| || | || | ||| ||
Sbjct 907 GAAGATTGCGGGTCAAGATCGATGACCAGAATACGCAAATCTTCAAACAGCAAATGGGGA 848
Query 60807 TGAGCACGCATTGCATGCGCCAGAGAAACCGTCGATACAGTTTTTGACACACCGCCTTTA 60866
|| ||||||| ||||| || || || || || ||||| ||||| ||||| ||||||||
Sbjct 847 TGCGCACGCAAAGCATGGGCAAGCGAGACAGTGGATACCGTTTTCGACACGCCGCCTTTC 788
Query 60867 AGATTGGAGATGAAAATCACATACGCTTCGCTGTAGCGATCCCGGTATTTTGGCACTCCG 60926
|| || | || || |||||||| || ||||| || ||||| || || |||
Sbjct 787 AGGTTACCCACAAACATTGTGAACGCTTCGACGTGACGATCGCGATATTTGGGTACGCCG 728
Query 60927 CGATGTTCATATATGTCAATGATGTTCTGAATTGACATCGCATATTTCATTGAAGAGCCA 60986
||||| | ||| ||||| |||||||| ||||| ||||||||||| || | || ||
Sbjct 727 CGATGATGATAGATGTCGATGATGTTTTGAATCGACATCGCATACTTGGTAGAGCTTCCC 668
Query 60987 GCAGGGCGTTTATCGAAAACATAACCCTTTTCTTCCATTTCACTTACGGCATAGTCAACG 61046
|| | |||||||||||| ||| || ||||||||||||||| | || ||||| ||||||
Sbjct 667 GCCGCGCGTTTATCGAATGGATAGCCGTTTTCTTCCATTTCATTCACCGCATAATCAACG 608
Query 61047 TTCGCTCGAGTCAGTAGAGGCAATTTTGCCAGTGCCGCTTTCGCATAGACCTGGTAAAAC 61106
|||| || |||| | ||||| ||| || | ||||||||||| || ||||| ||||||
Sbjct 607 CTCGCACGCGTCAATTTAGGCAGTTTGGCTAACGCCGCTTTCGCGTAAACCTGATAAAAC 548
Query 61107 TCGTTCGCGTGTAGCTCATCCTTTTGCAACTGTACTTGTTCAGTCAG 61153
||| | | | ||| || ||||| ||| | ||||| |||||
Sbjct 547 GTGTTTTCACGCAACTCTTCTTTTTGTGCCTGAATCTGTTCGGTCAG 501
>seq16149
Length=12179
Score = 114 bits (126), Expect = 8e-21
Identities = 292/438 (67%), Gaps = 10/438 (2%)
Strand=Plus/Minus
Query 65926 TGCCAGCGCGCGGCAGGCAGAGGATATGCTCGCGCTTATGCGTAAGTCTCTGGGTTCTCT 65985
||||||||| | || || |||| || ||||| ||||||| ||||| || ||
Sbjct 1026 TGCCAGCGCTAAAAAAGCGGAAGATACCCTGGCGCTGCTGCGTAAAAGCCTGGGCTCACT 967
Query 65986 TCCTGTTGTTCCCCTGAGTGTTGAAAATCCCATTGAATTAACGCTGACCGACTGGGTACG 66045
|| || || || |||| | |||| || |||||| | || ||||| || ||||||||
Sbjct 966 GCCGGTGGTGCCGCTGACGCTGGAAAGCCCGATTGAACTGACCCTGACAGAATGGGTACG 907
Query 66046 TGATGGTAGTGCT-CCACAGGGATTTCAAATGGGGGATGCGGCAGAACTTAAGGCAGTGC 66104
| || | ||| || ||||| || ||||| || || || || || |||
Sbjct 906 TTCAGGC-GAGCTGCCTGCCGGATTCGCCCTGATGGATGAAGCGGAGCTGAAAGCGCTGC 848
Query 66105 TTGAGGATGGCGGTATTGCCCGAGTGAAAAAGCAGGATTTGGGAAGCGATGAAATTTCCA 66164
| || |||||||| || ||| || || |||||| ||| ||||||| || |||
Sbjct 847 TGGAAGATGGCGGCGTTATCCGCTGCAAGAAACAGGATCTGGTGTGCGATGAGATCGCCA 788
Query 66165 CACACCTGGAAGCTGGCAAGCTCGTTACTAAGTTGGCACTCGACTGGCAGAAACGCATTA 66224
||| | ||||| || ||||| || || || |||| |||||||||||| | ||||||
Sbjct 787 ACCACATCGAAGCGGGTAAGCTGGTAACCAAACTGGCGCTCGACTGGCAGGAGCGCATTC 728
Query 66225 AATTTACACTGGACCATAA--CTTCAGCCTTACCAGCGTC--AAATTTGCGGATGAATTG 66280
| || |||| | || | ||||| | | |||||| || || || ||
Sbjct 727 AGTTCGTGCTGGCCGATGATGGTTCAG--TGA--AGCGTCTGAAGTTCAGCGACACGCTG 672
Query 66281 CTTGAGCAGAACTCTGATATTGATAGTGAAGATGTTGCGCAGCGACTGGACGCAGATTTC 66340
| || |||||| |||||||| | |||||| |||| ||||| | || || || ||
Sbjct 671 CGCGACCAGAACGACGATATTGACCGCGAAGATTTTGCACAGCGCTTTGATGCGGACTTT 612
Query 66341 TTCCTGTTGACCAGTGAA 66358
| ||| ||||||| |||
Sbjct 611 ATTCTGATGACCAGCGAA 594
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 302914895501070
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |