Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq42150 533 9e-147 seq16149 114 8e-21 >seq42150 Length=2645 Score = 533 bits (590), Expect = 9e-147 Identities = 799/1127 (71%), Gaps = 6/1127 (1%) Strand=Plus/Minus Query 60030 ATAAATTCAATACGGTCAAAAACTGCTTTAGCAAAATCTTCCGCGGCAATTCGCGCGTTC 60089 || ||||||||||| ||||| || ||||| || ||||| ||||| || ||||| || Sbjct 1624 ATGAATTCAATACGATCAAATACGGCTTTGGCGAAATCCTCCGCCGCTGAACGCGCATTT 1565 Query 60090 TTCAATGCATCAGCACTACCAACATACGTTGCCGGGTTAGCTGAAATAACAGTGTCAAAA 60149 || || || || | || || ||||| |||| || || || || || || |||||||| Sbjct 1564 TTTAAGGCCTCGGTGCTGCCCACATAGGTTGAGGGATTGGCAGAGATTACCGTGTCAAAC 1505 Query 60150 GACTCGCCGCAGCGTTCAAAACCGTCAAGGCGAGGGAG-GAAGACATCAAGCATATCCCC 60208 ||||| || ||||| ||||| || || || || || | | || |||| |||||||| || Sbjct 1504 GACTCACCACAGCGCTCAAAGCCATCCAGACGCGGTAACGCAG-CATCCAGCATATCGCC 1446 Query 60209 ACCGAACACTTCTTTAGCCAGGCTATGGCAATACTTATGGTCTGCCTTGTTACTCAACTT 60268 || || | ||||| |||||||| ||||| || ||||| || || ||| | ||| Sbjct 1445 GCCAAAAATCTCTTTTGCCAGGCTGTGGCACAGTTTGTGGTCGGCTTTATTAGAGAGCTT 1386 Query 60269 GGACATAAAACCAATGTTAGTC-GCAAGCTGGCACTCGCAGCCTTCATCCGAAATGAGTT 60327 ||||||||||| || || | | |||| |||| | |||| || ||||| Sbjct 1385 TGACATAAAACCGATATTGCCCTGTAAGC-GGCAGGCTGCGCCTGACTCTTCAATGATGC 1327 Query 60328 TCACCAACTCAGGAAGGCGGGCAACGTATTTAAGCGATGAGTGGAAATCGACAGTTGCTG 60387 | || ||| || | || | | || || | || ||||||||||| || || | Sbjct 1326 CAATCAGCTCCGGCAAACGCGTCAGATACTTTAACGTGGAGTGGAAATCCACCTGCGCGG 1267 Query 60388 GCGGCAGAGGTGTAAACAGTATATTGGCCGAGGCCAAAGCATTTTTCAGGAAGGCGTCAA 60447 | |||| || || | ||| | | | | ||| | || || ||||||||||| || | Sbjct 1266 GGGGCACCGGCGTCATCAGCAGGTCTGAAGCGGCAATGGCGTTCTTCAGGAAGGCATCCA 1207 Query 60448 GGTGAGGACCACTATCAACGAGGATAAAGTCATAATCGCTCTTCAGCTTATCAATCACAT 60507 | || || || || || | | ||| ||||||||||| |||||||||| | | ||||| Sbjct 1206 GATGTGGGCCGCTGTCGATAAAGATGAAGTCATAATCTTTCTTCAGCTTGGCCACCACAT 1147 Query 60508 TTTCTTTCAGGACAGCATGGATGTTCTGACCCGGTAGATGCTCATTGCACAGCTCTCTCC 60567 |||| | |||||| || || || ||||| |||| | || || || |||||| ||| Sbjct 1146 TTTCATACAGGACCGCGTGAATATTCTGCTCCGGCAAGTGGGCAGCACAAAGCTCT-TCC 1088 Query 60568 AATCG-GATGCAATAAAGGCATCGTCAATCGACGCAGGCATAACGTCAACCCCAGGTACA 60626 | || || ||||||||||| || |||||||| || |||| || || || || || | | Sbjct 1087 CAGCGCGAGGCAATAAAGGCGTCATCAATCGAAGCCGGCAGCACATCGACGCCGGGAATA 1028 Query 60627 ACAGAAGGAACAATAAACTCCTCTAACAGCTCTTCACGGCTTACATTCTGCAACATAGCC 60686 | || | ||| |||||||| | | ||||||||||||||| || || |||| ||||||| Sbjct 1027 ATCGACGAAACGATAAACTCATTGAGCAGCTCTTCACGGCTGACGTTTTGCAGCATAGCC 968 Query 60687 TGTGCAGATGTTGCGTTTACGATACCAATAGAGTGTTTATGGCTTAAAAACATCGTTGCT 60746 || || | ||| || | || | || | || | | ||| | | ||||| || ||| Sbjct 967 TGGGCGGCTGTCGCTTCCACTAATCCCACTGAACGCTGATGATTCAGGAACATGGTGGCT 908 Query 60747 GAAGATTGCGGATCAAGGTCAATAACCAGAATCCTTAAATCCTCCATAAGAAGATGAGGG 60806 ||||||||||| ||||| || || |||||||| | ||||| || | || | ||| || Sbjct 907 GAAGATTGCGGGTCAAGATCGATGACCAGAATACGCAAATCTTCAAACAGCAAATGGGGA 848 Query 60807 TGAGCACGCATTGCATGCGCCAGAGAAACCGTCGATACAGTTTTTGACACACCGCCTTTA 60866 || ||||||| ||||| || || || || || ||||| ||||| ||||| |||||||| Sbjct 847 TGCGCACGCAAAGCATGGGCAAGCGAGACAGTGGATACCGTTTTCGACACGCCGCCTTTC 788 Query 60867 AGATTGGAGATGAAAATCACATACGCTTCGCTGTAGCGATCCCGGTATTTTGGCACTCCG 60926 || || | || || |||||||| || ||||| || ||||| || || ||| Sbjct 787 AGGTTACCCACAAACATTGTGAACGCTTCGACGTGACGATCGCGATATTTGGGTACGCCG 728 Query 60927 CGATGTTCATATATGTCAATGATGTTCTGAATTGACATCGCATATTTCATTGAAGAGCCA 60986 ||||| | ||| ||||| |||||||| ||||| ||||||||||| || | || || Sbjct 727 CGATGATGATAGATGTCGATGATGTTTTGAATCGACATCGCATACTTGGTAGAGCTTCCC 668 Query 60987 GCAGGGCGTTTATCGAAAACATAACCCTTTTCTTCCATTTCACTTACGGCATAGTCAACG 61046 || | |||||||||||| ||| || ||||||||||||||| | || ||||| |||||| Sbjct 667 GCCGCGCGTTTATCGAATGGATAGCCGTTTTCTTCCATTTCATTCACCGCATAATCAACG 608 Query 61047 TTCGCTCGAGTCAGTAGAGGCAATTTTGCCAGTGCCGCTTTCGCATAGACCTGGTAAAAC 61106 |||| || |||| | ||||| ||| || | ||||||||||| || ||||| |||||| Sbjct 607 CTCGCACGCGTCAATTTAGGCAGTTTGGCTAACGCCGCTTTCGCGTAAACCTGATAAAAC 548 Query 61107 TCGTTCGCGTGTAGCTCATCCTTTTGCAACTGTACTTGTTCAGTCAG 61153 ||| | | | ||| || ||||| ||| | ||||| ||||| Sbjct 547 GTGTTTTCACGCAACTCTTCTTTTTGTGCCTGAATCTGTTCGGTCAG 501 >seq16149 Length=12179 Score = 114 bits (126), Expect = 8e-21 Identities = 292/438 (67%), Gaps = 10/438 (2%) Strand=Plus/Minus Query 65926 TGCCAGCGCGCGGCAGGCAGAGGATATGCTCGCGCTTATGCGTAAGTCTCTGGGTTCTCT 65985 ||||||||| | || || |||| || ||||| ||||||| ||||| || || Sbjct 1026 TGCCAGCGCTAAAAAAGCGGAAGATACCCTGGCGCTGCTGCGTAAAAGCCTGGGCTCACT 967 Query 65986 TCCTGTTGTTCCCCTGAGTGTTGAAAATCCCATTGAATTAACGCTGACCGACTGGGTACG 66045 || || || || |||| | |||| || |||||| | || ||||| || |||||||| Sbjct 966 GCCGGTGGTGCCGCTGACGCTGGAAAGCCCGATTGAACTGACCCTGACAGAATGGGTACG 907 Query 66046 TGATGGTAGTGCT-CCACAGGGATTTCAAATGGGGGATGCGGCAGAACTTAAGGCAGTGC 66104 | || | ||| || ||||| || ||||| || || || || || ||| Sbjct 906 TTCAGGC-GAGCTGCCTGCCGGATTCGCCCTGATGGATGAAGCGGAGCTGAAAGCGCTGC 848 Query 66105 TTGAGGATGGCGGTATTGCCCGAGTGAAAAAGCAGGATTTGGGAAGCGATGAAATTTCCA 66164 | || |||||||| || ||| || || |||||| ||| ||||||| || ||| Sbjct 847 TGGAAGATGGCGGCGTTATCCGCTGCAAGAAACAGGATCTGGTGTGCGATGAGATCGCCA 788 Query 66165 CACACCTGGAAGCTGGCAAGCTCGTTACTAAGTTGGCACTCGACTGGCAGAAACGCATTA 66224 ||| | ||||| || ||||| || || || |||| |||||||||||| | |||||| Sbjct 787 ACCACATCGAAGCGGGTAAGCTGGTAACCAAACTGGCGCTCGACTGGCAGGAGCGCATTC 728 Query 66225 AATTTACACTGGACCATAA--CTTCAGCCTTACCAGCGTC--AAATTTGCGGATGAATTG 66280 | || |||| | || | ||||| | | |||||| || || || || Sbjct 727 AGTTCGTGCTGGCCGATGATGGTTCAG--TGA--AGCGTCTGAAGTTCAGCGACACGCTG 672 Query 66281 CTTGAGCAGAACTCTGATATTGATAGTGAAGATGTTGCGCAGCGACTGGACGCAGATTTC 66340 | || |||||| |||||||| | |||||| |||| ||||| | || || || || Sbjct 671 CGCGACCAGAACGACGATATTGACCGCGAAGATTTTGCACAGCGCTTTGATGCGGACTTT 612 Query 66341 TTCCTGTTGACCAGTGAA 66358 | ||| ||||||| ||| Sbjct 611 ATTCTGATGACCAGCGAA 594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 302914895501070