Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq81517 123 3e-23
seq4297 116 4e-21
seq163 93.3 5e-14
>seq81517
Length=1088
Score = 123 bits (136), Expect = 3e-23
Identities = 300/448 (67%), Gaps = 16/448 (4%)
Strand=Plus/Plus
Query 6811 TGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATA 6870
|||||||||| | || ||||||| ||| | ||| ||||| || || || || |
Sbjct 466 TGTTCTTTTAAGGGTTCAATATGATTGTTATAGACATGGGCATCACCAAGAGTGTGCACG 525
Query 6871 AATTCACCTGGTT----TCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATA 6926
||||| || || || ||| | || ||||| | ||||||||| || |||||
Sbjct 526 AATTCTCCGGGACGAAGTCCGGTCA----CGTGTGCAATCATATATGTTAACAAAGCATA 581
Query 6927 AGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACA 6986
||| || | ||| || || || || |||||||| || || | |||||| | |||||
Sbjct 582 AGAGGCGATATTGAATGGCACGCCCAATCCCATGTCAGCGCTACGTTGATACAACTGACA 641
Query 6987 AGATAAAATATTGTCTATAGCATAAAATTGACACAATACA-TGACATGGAGGTAAAACAG 7045
||| | | | | | | ||||||| | | ||| ||||| ||||||| |
Sbjct 642 AGACAGCTCACCATTTGCAACGAAAAATTGTG-CTAGACAATGACAAGGAGGTAGTGCCA 700
Query 7046 CCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTG 7105
|| || ||| |||||||| |||| ||||| || || | |||||| || ||||
Sbjct 701 TTTGCGGAATGTCAAGGGGATTCCACGCAGACATTATTATGCGACGATCATTCGG-TTTG 759
Query 7106 TTTTTAATTTTGTTATAATTA---TTTGTAATTGATCTATACCCTGACCTTCATAATTAG 7162
||| ||| | | | |||| |||| | |||||||| || | ||| ||||||
Sbjct 760 TTTCGGATTGTATCA--ATTACATTTTGAAGTTGATCTACGCCTTCACCCGAGTAATTAT 817
Query 7163 TATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTA 7222
| || || ||| || ||||||||||| | ||| ||||| ||||| | || || |
Sbjct 818 CGTTGCATGTTCGATATTTGGCTCCAAAATGGCGCCACTGAAATCCATACACGGGGCCCA 877
Query 7223 AATCACCTTCTTCACGATGATTAAATCC 7250
||||||||||||| |||| || ||| ||
Sbjct 878 AATCACCTTCTTCGCGATTATGAAAACC 905
>seq4297
Length=52141
Score = 116 bits (128), Expect = 4e-21
Identities = 271/408 (66%), Gaps = 22/408 (5%)
Strand=Plus/Plus
Query 164722 TTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGT--------- 164772
|| ||| | || |||| ||||| || |||||| | |||||| ||||||
Sbjct 38978 TTGCATATCATCATTTTCGATGAAATCGATGCTATCTGCAAAGCGCGTGGTTCGGTCGCT 39037
Query 164773 GATAATATTA---TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTA 164829
| |||| | | || || ||||||||||||| ||||| | ||||| ||||| ||
Sbjct 39038 GGCAATAGTGGCGTACACGACACAGTGGTTAATCAATTGCTAGCCAAAATCGATGGCGTG 39097
Query 164830 GAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGAT 164889
||| |||| ||||| || || | |||||||||||| ||| ||| | ||||| ||
Sbjct 39098 GAACAGCTAAACAATATATTGGTTATTGGTATGACCAACAGACGTGACATGATTGACGAA 39157
Query 164890 GCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAA 164949
||||| | ||||| ||||| || ||| || |||| || || | | || || ||||
Sbjct 39158 GCTTTGATGCGACCCGGTCGCTTGGAAGTGCAAATGGAGATCAGCCTGCCGAACGAAGAG 39217
Query 164950 GGACGCCTTCAAATTTTAAAAGTTCATGTGGCTAAAATGAAATCCTGTGAT---ATATTA 165006
|| ||| | |||||| | || | || | ||| || | || | | |
Sbjct 39218 GGTCGCGTGCAAATTCTGAACATACA-----CACAAAGCGTATGCGCGAATTCAACAAGA 39272
Query 165007 T--CTCCCGATGTAGATTTAAATAAAATAGCTGCCGAAACTAAAAATTATAGTGGTGCTG 165064
| ||||||| || |||| || | || ||||| ||| || || | |||||||||||
Sbjct 39273 TTGCTCCCGACGTCGATTCCAAGGAGATTGCTGCATTAACAAAGAACTTTAGTGGTGCTG 39332
Query 165065 AATTAGAGGGATTAGTAAGAGCCGCTCAATCAACCGCATTAAGTCGAT 165112
| || ||||| || || | || || ||||| ||||| | | |||||
Sbjct 39333 AGTTGGAGGGTTTGGTGCGTGCGGCACAATCCACCGCTATGAATCGAT 39380
>seq163
Length=433384
Score = 93.3 bits (102), Expect = 5e-14
Identities = 110/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 19355 ATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATG 19414
||||| |||| |||||||||||||| || | | |||||| || || ||||||||
Sbjct 209367 ATACCACAAATTGGTGATAAGTTTGCCTCACGTCACGGTCAAAAGGGTACTTGTGGTATC 209308
Query 19415 ATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATT 19474
|||||||||||||| ||| | ||||| || || | | || ||| ||||||||
Sbjct 209307 CAGTATCGTCAAGAAGACATGGCATTTACATGTGAGGGACTGGCACCCGATATTATTATT 209248
Query 19475 AACCCACATGCTTTTCCAAGTCGAATGAC 19503
||||| || ||| ||||| ||| |||||
Sbjct 209247 AACCCTCACGCTATTCCATCTCGTATGAC 209219
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595226447172000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |