Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq81517 123 3e-23 seq4297 116 4e-21 seq163 93.3 5e-14 >seq81517 Length=1088 Score = 123 bits (136), Expect = 3e-23 Identities = 300/448 (67%), Gaps = 16/448 (4%) Strand=Plus/Plus Query 6811 TGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATA 6870 |||||||||| | || ||||||| ||| | ||| ||||| || || || || | Sbjct 466 TGTTCTTTTAAGGGTTCAATATGATTGTTATAGACATGGGCATCACCAAGAGTGTGCACG 525 Query 6871 AATTCACCTGGTT----TCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATA 6926 ||||| || || || ||| | || ||||| | ||||||||| || ||||| Sbjct 526 AATTCTCCGGGACGAAGTCCGGTCA----CGTGTGCAATCATATATGTTAACAAAGCATA 581 Query 6927 AGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACA 6986 ||| || | ||| || || || || |||||||| || || | |||||| | ||||| Sbjct 582 AGAGGCGATATTGAATGGCACGCCCAATCCCATGTCAGCGCTACGTTGATACAACTGACA 641 Query 6987 AGATAAAATATTGTCTATAGCATAAAATTGACACAATACA-TGACATGGAGGTAAAACAG 7045 ||| | | | | | | ||||||| | | ||| ||||| ||||||| | Sbjct 642 AGACAGCTCACCATTTGCAACGAAAAATTGTG-CTAGACAATGACAAGGAGGTAGTGCCA 700 Query 7046 CCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTG 7105 || || ||| |||||||| |||| ||||| || || | |||||| || |||| Sbjct 701 TTTGCGGAATGTCAAGGGGATTCCACGCAGACATTATTATGCGACGATCATTCGG-TTTG 759 Query 7106 TTTTTAATTTTGTTATAATTA---TTTGTAATTGATCTATACCCTGACCTTCATAATTAG 7162 ||| ||| | | | |||| |||| | |||||||| || | ||| |||||| Sbjct 760 TTTCGGATTGTATCA--ATTACATTTTGAAGTTGATCTACGCCTTCACCCGAGTAATTAT 817 Query 7163 TATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTA 7222 | || || ||| || ||||||||||| | ||| ||||| ||||| | || || | Sbjct 818 CGTTGCATGTTCGATATTTGGCTCCAAAATGGCGCCACTGAAATCCATACACGGGGCCCA 877 Query 7223 AATCACCTTCTTCACGATGATTAAATCC 7250 ||||||||||||| |||| || ||| || Sbjct 878 AATCACCTTCTTCGCGATTATGAAAACC 905 >seq4297 Length=52141 Score = 116 bits (128), Expect = 4e-21 Identities = 271/408 (66%), Gaps = 22/408 (5%) Strand=Plus/Plus Query 164722 TTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGT--------- 164772 || ||| | || |||| ||||| || |||||| | |||||| |||||| Sbjct 38978 TTGCATATCATCATTTTCGATGAAATCGATGCTATCTGCAAAGCGCGTGGTTCGGTCGCT 39037 Query 164773 GATAATATTA---TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTA 164829 | |||| | | || || ||||||||||||| ||||| | ||||| ||||| || Sbjct 39038 GGCAATAGTGGCGTACACGACACAGTGGTTAATCAATTGCTAGCCAAAATCGATGGCGTG 39097 Query 164830 GAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGAT 164889 ||| |||| ||||| || || | |||||||||||| ||| ||| | ||||| || Sbjct 39098 GAACAGCTAAACAATATATTGGTTATTGGTATGACCAACAGACGTGACATGATTGACGAA 39157 Query 164890 GCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAA 164949 ||||| | ||||| ||||| || ||| || |||| || || | | || || |||| Sbjct 39158 GCTTTGATGCGACCCGGTCGCTTGGAAGTGCAAATGGAGATCAGCCTGCCGAACGAAGAG 39217 Query 164950 GGACGCCTTCAAATTTTAAAAGTTCATGTGGCTAAAATGAAATCCTGTGAT---ATATTA 165006 || ||| | |||||| | || | || | ||| || | || | | | Sbjct 39218 GGTCGCGTGCAAATTCTGAACATACA-----CACAAAGCGTATGCGCGAATTCAACAAGA 39272 Query 165007 T--CTCCCGATGTAGATTTAAATAAAATAGCTGCCGAAACTAAAAATTATAGTGGTGCTG 165064 | ||||||| || |||| || | || ||||| ||| || || | ||||||||||| Sbjct 39273 TTGCTCCCGACGTCGATTCCAAGGAGATTGCTGCATTAACAAAGAACTTTAGTGGTGCTG 39332 Query 165065 AATTAGAGGGATTAGTAAGAGCCGCTCAATCAACCGCATTAAGTCGAT 165112 | || ||||| || || | || || ||||| ||||| | | ||||| Sbjct 39333 AGTTGGAGGGTTTGGTGCGTGCGGCACAATCCACCGCTATGAATCGAT 39380 >seq163 Length=433384 Score = 93.3 bits (102), Expect = 5e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 19355 ATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATG 19414 ||||| |||| |||||||||||||| || | | |||||| || || |||||||| Sbjct 209367 ATACCACAAATTGGTGATAAGTTTGCCTCACGTCACGGTCAAAAGGGTACTTGTGGTATC 209308 Query 19415 ATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATT 19474 |||||||||||||| ||| | ||||| || || | | || ||| |||||||| Sbjct 209307 CAGTATCGTCAAGAAGACATGGCATTTACATGTGAGGGACTGGCACCCGATATTATTATT 209248 Query 19475 AACCCACATGCTTTTCCAAGTCGAATGAC 19503 ||||| || ||| ||||| ||| ||||| Sbjct 209247 AACCCTCACGCTATTCCATCTCGTATGAC 209219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595226447172000