Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq8974 132 3e-26 seq38461 131 9e-26 seq989 127 1e-24 seq23339 118 6e-22 seq865 116 2e-21 seq14264 114 7e-21 seq11662 114 7e-21 seq731 114 7e-21 seq17403 84.2 1e-11 seq11813 84.2 1e-11 >seq8974 Length=25430 Score = 132 bits (146), Expect = 3e-26 Identities = 81/87 (93%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 9238 TAAAAAATCATATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 9297 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 9298 CGCTCTAACCAACTGAGCTAATGGGCC 9324 >seq38461 Length=3019 Score = 131 bits (144), Expect = 9e-26 Identities = 80/86 (93%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 252 AAAAAATCATATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 311 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 312 GCTCTAACCAACTGAGCTAATGGGCC 337 >seq989 Length=166514 Score = 127 bits (140), Expect = 1e-24 Identities = 81/89 (91%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||| || ||| |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 87770 AATAAAAGATTAAACTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 87711 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 87710 GACGCTCTAACCAACTGAGCTAATGGGCC 87682 Score = 123 bits (136), Expect = 1e-23 Identities = 89/102 (87%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 11428 GAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 |||||| | || ||| |||||| | ||||||||||| |||||||||| |||||||| Sbjct 72531 GAAATAGA-AAGTAAAAAAAAAACCGCTTGGCCCATGAGGGGATCGAACCCGCGACCTTC 72589 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| |||||||||||||||||||| Sbjct 72590 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 72631 >seq23339 Length=6770 Score = 118 bits (130), Expect = 6e-22 Identities = 80/90 (89%), Gaps = 3/90 (3%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATT---GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||||||| ||||| ||||||||| |||||||||| |||||||||||||||||||| Sbjct 685 TAAAAAAAAAAATTTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 744 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 745 CGACGCTCTAACCAACTGAGCTAATGGGCC 774 >seq865 Length=179620 Score = 116 bits (128), Expect = 2e-21 Identities = 81/90 (90%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 11442 ATAAAA-AATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||||| || | ||| |||||||||| |||||||||| |||||||||||||||||||| Sbjct 118080 ATAAAAGAACCGAATGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 118021 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 118020 CGACGCTCTAACCAACTGAGCTAATGGGCC 117991 Score = 114 bits (126), Expect = 7e-21 Identities = 79/89 (89%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| | ||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 104339 AAAAAAAAAT-ATTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 104281 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||| ||||||||| Sbjct 104280 GACGCTCTAACCAACTGAGGTAATGGGCC 104252 >seq14264 Length=14576 Score = 114 bits (126), Expect = 7e-21 Identities = 86/101 (85%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 11432 TATAGAATTAATAAAAAA---TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 |||| | | || |||||| | || |||||||||| |||||||||| ||||||||| Sbjct 425 TATAAAGTGAAAAAAAAACATTTGAAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCG 484 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||||||||||||||||||| Sbjct 485 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 525 >seq11662 Length=18708 Score = 114 bits (126), Expect = 7e-21 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || |||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 10026 AAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 10085 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 10086 AACTGAGCTAATGGGCC 10102 >seq731 Length=200492 Score = 114 bits (126), Expect = 7e-21 Identities = 87/103 (84%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 11430 AATATAGAATTAATAAAAAATCAAATT---GGCCCATGAAAGGATCGAACCTTCGACCTT 11486 || |||| || ||||||| | || | ||||||||| |||||||||| ||||||| Sbjct 99729 AAAATAGCATAAATAAAATAGCATGCTCATGGCCCATGAGGGGATCGAACCCGCGACCTT 99670 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||| |||||||||||||||||||| Sbjct 99669 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 99627 Score = 114 bits (126), Expect = 7e-21 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || |||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 100990 AAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 100931 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 100930 AACTGAGCTAATGGGCC 100914 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 108611 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 108552 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 108551 TGAGCTAATGGGCC 108538 >seq17403 Length=10881 Score = 84.2 bits (92), Expect = 1e-11 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTA 11522 ||||||||| | |||||||||||||||||||||||||||| ||||||||||||| Sbjct 8961 GGATCGAACGCTGGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTA 9015 >seq11813 Length=18414 Score = 84.2 bits (92), Expect = 1e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 11467 AGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAAT 11524 |||||||||| |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 17641 AGGATCGAACTGCAGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAAT 17698 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261214989296920