Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq20874 176 7e-40 seq27976 167 4e-37 seq61 167 4e-37 seq33899 158 2e-34 seq5463 158 2e-34 seq28022 154 2e-33 seq1300 143 4e-30 seq1469 141 1e-29 seq2225 120 5e-23 seq67086 111 2e-20 >seq20874 Length=8152 Score = 176 bits (194), Expect = 7e-40 Identities = 184/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | |||||| ||||||||||| || ||||||||||| |||||| Sbjct 2422 GCCAAGCGCCATCGCAAAGTTCTTCGCGATAACATCCAGGGCATCACCAAGCCCGCTATC 2363 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||||||||| ||||| || || ||||| |||| || | |||| || || | Sbjct 2362 CGTCGTCTGGCTCGCCGTGGCGGCGTGAAGCGCATCTCCGGTCTCATCTACGAGGAAACC 2303 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | ||| ||||||| ||| ||| |||| || ||| || ||| |||||| Sbjct 2302 CGCGGCGTCCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACGCTGTCACCTACACCGAG 2243 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| | ||||| |||| || || | || || |||||| Sbjct 2242 CACGCCAAGCGCAAGACCGTCACCGCGATGGACGTCGTTTACGCGCTCAAGCGCCAAGGC 2183 Query 16673 CG 16674 || Sbjct 2182 CG 2181 >seq27976 Length=5021 Score = 167 bits (184), Expect = 4e-37 Identities = 199/270 (74%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| |||||| ||||||||||| || ||||||||||| || ||| Sbjct 2273 GCGAAGCGCCATCGCAAGGTTCTTCGTGATAACATCCAGGGCATCACCAAGCCCGCCATC 2332 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || |||||||| || ||||| || ||||| || || | |||| || |||| Sbjct 2333 CGCCGACTGGCTCGCCGCGGTGGTGTGAAGCGCATCAGCGGTCTCATCTACGAGGAGACC 2392 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | ||| ||||||| ||| ||| |||| || ||| || ||| |||||| Sbjct 2393 CGCGGCGTCCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACGCTGTCACCTACACCGAG 2452 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| |||||||||| | || || || ||| Sbjct 2453 CACGCCAAGCGAAAGACCGTCACCGCCATGGACGTCGTCTATGCGCTCAAGCGCCAGGGC 2512 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || | | || ||||| || ||||| || Sbjct 2513 CGCACTCTGTACGGTTTCGGCGGTTAAGCT 2542 >seq61 Length=654568 Score = 167 bits (184), Expect = 4e-37 Identities = 197/267 (74%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | | | || ||||||||||| || || |||||||||||||| Sbjct 343963 GCCAAGCGTCATCGTAAAGTTTTGCGTGATAACATCCAGGGTATTACCAAGCCAGCTATT 343904 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||| ||||||||||||| || || || ||| | ||||| ||| | |||||||| | Sbjct 343903 AGACGTTTGGCTCGTCGTGGCGGTGTGAAACGTATATCTGGTTTGATATATGAAGAAACA 343844 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||||||||| | || | | | ||||||| |||||| || |||||||| Sbjct 343843 CGTGGAGTTTTGAAGGTATTTTTGGAAAATGTTATCCGTGATGCAGTCACTTATACCGAA 343784 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||| | ||||| || || | |||||| | || ||||| |||| | |||||| Sbjct 343783 CATGCCAAAAGAAAGACAGTTACAGCAATGGATGTTGTATATGCTCTGAAGAGACAAGGC 343724 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | |||||||| || ||||| Sbjct 343723 CGCACTCTGTATGGTTTCGGCGGTTAA 343697 Score = 167 bits (184), Expect = 4e-37 Identities = 197/267 (74%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | | | || ||||||||||| || || |||||||||||||| Sbjct 348766 GCCAAGCGTCATCGTAAAGTTTTGCGTGATAACATCCAGGGTATTACCAAGCCAGCTATT 348707 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||| ||||||||||||| || || || ||| | ||||| ||| | |||||||| | Sbjct 348706 AGACGTTTGGCTCGTCGTGGCGGTGTGAAACGTATATCTGGTTTGATATATGAAGAAACA 348647 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||||||||| | || | | | ||||||| |||||| || |||||||| Sbjct 348646 CGTGGAGTTTTGAAGGTATTTTTGGAAAATGTTATCCGTGATGCAGTCACTTATACCGAA 348587 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||| | ||||| || || | |||||| | || ||||| |||| | |||||| Sbjct 348586 CATGCCAAAAGAAAGACAGTTACAGCAATGGATGTTGTATATGCTCTGAAGAGACAAGGC 348527 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | |||||||| || ||||| Sbjct 348526 CGCACTCTGTATGGTTTCGGCGGTTAA 348500 >seq33899 Length=3658 Score = 158 bits (174), Expect = 2e-34 Identities = 198/269 (74%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| ||||||| | || || || ||||||||||| || ||||| ||||| || | Sbjct 1996 CGCCAAGCGCCATCGCAAGGTC-CTCCGCGATAACATCCAGGGCATCACGAAGCCCGCCA 2054 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||||||||| ||||| || ||||| || || | |||| || |||| Sbjct 2055 TCCGCCGACTGGCTCGTCGCGGTGGTGTGAAGCGCATCAGCGGCCTCATCTACGAGGAGA 2114 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| ||||||| ||| ||| |||| || || || ||| |||| Sbjct 2115 CCCGCGGCGTCCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACGCGGTCACCTACACCG 2174 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| ||||||| ||||||| || | || ||||| | Sbjct 2175 AGCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCTCTCAAGCGTCAGG 2234 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | || ||||| || ||||| Sbjct 2235 GCCGCACTCTGTACGGTTTCGGCGGTTAA 2263 >seq5463 Length=42390 Score = 158 bits (174), Expect = 2e-34 Identities = 183/244 (75%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| ||||||| | || || || || ||||| || || ||||||||||| || | Sbjct 22169 CGCCAAGCGCCATCGCAAGGTC-CTCCGCGACAACATTCAGGGCATCACCAAGCCTGCCA 22227 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| |||||||||||||| || || || ||||| || || || |||| || |||| Sbjct 22228 TCCGCCGTCTGGCTCGTCGAGGCGGCGTGAAGCGCATCAGCGGCCTGATCTACGAGGAGA 22287 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || ||||| |||| || ||| ||| |||| |||||| | ||| |||| Sbjct 22288 CTCGCGGCGTCCTGAAGGTCTTTCTGGAGAACGTCATCCGCGATGCTGTGACCTACACCG 22347 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| ||||||| ||||||| || |||| || || | Sbjct 22348 AGCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCTCTGAAGCGCCAGG 22407 Query 16671 GCCG 16674 | || Sbjct 22408 GACG 22411 >seq28022 Length=5004 Score = 154 bits (170), Expect = 2e-33 Identities = 182/244 (75%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| ||||||| | || || || || |||||||| || ||||| ||||| || | Sbjct 1727 CGCCAAGCGCCATCGCAAGGTC-CTCCGCGACAACATCCAGGGCATCACGAAGCCGGCCA 1785 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||||||| || || || |||||||| || || || |||| || |||| Sbjct 1786 TCCGCCGACTGGCTCGCCGCGGCGGCGTCAAGCGCATCAGCGGTCTGATCTACGAGGAGA 1845 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| ||||||| ||| ||| |||| ||||| || ||| |||| Sbjct 1846 CCCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTCATCCGCGATGCGGTCACCTACACCG 1905 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || |||||||| ||| ||||||| ||||||| || | || || || | Sbjct 1906 AGCACGCCAAGCGCAAGACTGTGACCGCCATGGACGTCGTCTACGCTCTCAAGCGCCAGG 1965 Query 16671 GCCG 16674 |||| Sbjct 1966 GCCG 1969 Score = 120 bits (132), Expect = 5e-23 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 16474 AATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGG 16533 ||| |||| || || ||||| || |||||||| || || || |||||||| || || Sbjct 2064 AATTACCACNCCGGCCATCCGCCGACTGGCTCGCCGCGGCGGCGTCAAGCGCATCAGCGG 2123 Query 16534 ATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGA 16593 || |||| || |||| || | || ||||| ||||||| ||| ||| |||| || Sbjct 2124 TCTGATCTACGAGGAGACCCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTCATCCGCGA 2183 Query 16594 TGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTA 16653 ||| || ||| ||||||||||| || || |||||||| ||| ||||||| ||||||| Sbjct 2184 TGCGGTCACCTACACCGAGCACGCCAAGCGCAAGACTGTGACCGCCATGGACGTCGTCTA 2243 Query 16654 TGCATTGAAACGTCAAGGCCG 16674 || | || || || ||||| Sbjct 2244 CGCTCTCAAGCGCCAGGGCCG 2264 >seq1300 Length=138498 Score = 143 bits (158), Expect = 4e-30 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | | | || ||||||||||| || || |||||||||||||| Sbjct 2199 GCCAAGCGTCATCGTAAAGTTTTGCGTGATAACATCCAGGGTATTACCAAGCCAGCTATT 2140 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||| ||||||||||||| || || || ||| | ||||| ||| | |||||||| | Sbjct 2139 AGACGTTTGGCTCGTCGTGGCGGTGTGAAACGTATATCTGGTTTGATATATGAAGAAACA 2080 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||||||||| | || | | | ||||||| |||||| || |||||||| Sbjct 2079 CGTGGAGTTTTGAAGGTATTTTTGGAAAATGTTATCCGTGATGCAGTCACTTATACCGAA 2020 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTAT 16654 || || ||| | ||||| || || | |||||| | || ||| Sbjct 2019 CATGCCAAAAGAAAGACAGTTACAGCAATGGATGTTGTATAT 1978 >seq1469 Length=124928 Score = 141 bits (156), Expect = 1e-29 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 16467 TCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTG 16526 |||| || || |||||||||||||| | ||| ||||||||||||| || || || ||| Sbjct 76489 TCCAGGGTATTACCAAGCCAGCTATTAGACGTTTGGCTCGTCGTGGCGGTGTGAAACGTA 76430 Query 16527 TCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTA 16586 | ||||| ||| | |||||||| | |||| ||||||||| | || | | | |||| Sbjct 76429 TATCTGGTTTGATATATGAAGAAACACGTGGAGTTTTGAAGGTATTTTTGGAAAATGTTA 76370 Query 16587 TCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATA 16646 ||| |||||| || |||||||| || || ||| | ||||| || || | |||||| Sbjct 76369 TCCGTGATGCAGTCGCTTATACCGAACATGCCAAAAGAAAGACAGTTACAGCAATGGATG 76310 Query 16647 TCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | || ||||| |||| | |||||||| | | |||||||| || ||||| Sbjct 76309 TTGTATATGCTCTGAAGAGACAAGGCCGCACTCTGTATGGTTTCGGCGGTTAA 76257 >seq2225 Length=90254 Score = 120 bits (132), Expect = 5e-23 Identities = 95/114 (83%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| |||||||||||||| |||||||||||||| || |||||| |||| ||||| || Sbjct 25242 CTTCGTGATAACATCCAAGGCATCACCAAGCCAGCCATTCGTCGTTTGGCACGTCGAGGA 25301 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 || || || ||| ||||||||||| | || ||||| | |||| |||||||||| Sbjct 25302 GGCGTAAAACGTATCTCTGGATTGATATACGAAGAAACGCGTGGTGTTTTGAAG 25355 Score = 104 bits (114), Expect = 4e-18 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 16582 CGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCAT 16641 |||||| | ||||||| || ||| ||||| || || || ||||||||||||||| | || Sbjct 25436 CGTTATTCGTGATGCTGTCACCTACACCGAACATGCCAAGCGTAAGACTGTCACCGCTAT 25495 Query 16642 GGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATC 16701 |||| | || |||||||||||||||||||| || | | || |||||||| | ||| | Sbjct 25496 GGATGTTGTATATGCATTGAAACGTCAAGGACGCACCCTCTACGGTTTTGGCGGCTAAAC 25555 Query 16702 TT 16703 || Sbjct 25556 TT 25557 >seq67086 Length=1407 Score = 111 bits (122), Expect = 2e-20 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 16469 CAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTC 16528 || || || ||||| |||||||| |||||||| |||||||||||||| || |||||| || Sbjct 1114 CAGGGTATTACCAAACCAGCTATTCGTCGTCTCGCTCGTCGTGGTGGTGTTAAGCGTATC 1173 Query 16529 TCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATC 16588 || || || |||| ||||| | |||| |||| | ||| ||||| | | | || ||| Sbjct 1174 TCCGGTTTAATCTACGAAGAAACCCGTGGTGTTCTCAAGGTCTTCTTGGAAAATGTCATC 1233 Query 16589 CATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATC 16648 || || || ||| || || ||||| || | ||||||||||| | | || | Sbjct 1234 AGAGACTCTGTCACCTACACAGAACACGCAAAGAGAAAGACTGTCACTGCACTCGACGTT 1293 Query 16649 GTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||||| ||| | || | ||||| | | |||| ||||| || Sbjct 1294 GTCTACGCACTCAAGAGACAAGGAAGAATCCTTTACGGTTTCGG 1337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78995957012310