Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_006657.1 Length=19820 Score E Sequences producing significant alignments: (Bits) Value seq3536 104 3e-18 seq10171 89.7 7e-14 >seq3536 Length=61778 Score = 104 bits (114), Expect = 3e-18 Identities = 223/326 (68%), Gaps = 8/326 (2%) Strand=Plus/Minus Query 12224 GATATTCTTTCATCAAAGAATGCCATAGCTACAGTTTCTGGGTTTAAATACCACAAATGC 12283 |||| |||| |||||| ||||| | ||| ||| ||| || | || ||||| || ||| Sbjct 36032 GATACACTTTTATCAAAAAATGCTAAAGCCACACATTCAGGACTCAAGTACCATAAGTGC 35973 Query 12284 ATGCTAAATTTTTTCAATGCCACTTCAGATATTTTAGCATCTGTCGATTGATAATCAATA 12343 | ||||||| | ||||| ||| |||||| | |||||| | |||| || | Sbjct 35972 CTTTTAAATTTGTGTAATGCAGCTTGAGATATATCAGCATCAATTTTTTGAAAAGAATCC 35913 Query 12344 AGTTCCTTTAAAAATGAT--AAATCATTATTTGGAGCTTCAGATGCGAGAGGACA-AGTG 12400 ||| |||| ||| | | ||||| || | ||| |||| || || ||| || || | Sbjct 35912 AGT--CTTTTCAAAAGCTGGAAATCTTTGTATGGTGCTTGAGCAGC-AGAAGAGGCAGAG 35856 Query 12401 AACCATGCTTTGATATACACTGTAGCAATAAAAACACAAATTTCAGAAACGGATTTGATT 12460 ||||| | | ||| | || | ||||||||| ||| || | | | | ||| | Sbjct 35855 AACCACATCTCAACATATATTGAAACAATAAAAATACATATATTACGTAAAGCTTTCCTA 35796 Query 12461 AATTTCACCGTCATTTTGAATTGTTTACGAAATAAAAATATTTTTATAGTA-TATATGGC 12519 ||| || | || | |||| ||||||||||||||||||| || | ||||| || Sbjct 35795 TCTTTTACTGCCAAATCAAATTCACGTCGAAATAAAAATATTTTTA-AGCAGTATATAGC 35737 Query 12520 TTTTGCCATCCACCTAGCGTGGTGGA 12545 |||||||||||| || |||||||||| Sbjct 35736 TTTTGCCATCCATCTCGCGTGGTGGA 35711 >seq10171 Length=21932 Score = 89.7 bits (98), Expect = 7e-14 Identities = 166/234 (71%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 11337 CTTAATATTAACTTTAAGATTGTC-CGC-GCTCTGATCTAAGTTTCTCATAGAAATAACA 11394 ||||||||||| ||||||| ||| ||| | | ||| | ||| |||| |||| ||| Sbjct 4199 CTTAATATTAAGTTTAAGA-GGTCGCGCATCGCGGATTTCTATTTTACATACAAATTACA 4257 Query 11395 TGGAAAAAATTTTATTTGTGCTTTAGAATTCCATAACTCTGCCATGAATAAATCAAAAGT 11454 | | ||| | ||| ||| ||||| ||||| | ||| || |||||| ||| ||| | Sbjct 4258 TAGCAAATAATTTTTTTCCGCTTTGGAATTTGTTTTCTCGGCTATGAAT-TATC-AAACT 4315 Query 11455 TATCAATTGTAT-CATATTTATTGT---AAATTCAACGCTCTACAAAAAAGTTATCTTAT 11510 | |||| ||| ||||||| |||| ||||| ||||| ||||||||| | | || Sbjct 4316 AAAAAATTCTATACATATTT-TTGTAGCAAATTAGACGCTATACAAAAAATGTCTGCAAT 4374 Query 11511 GATTTTTCGCTAAATGTATTGGCTTAAGAGTTATTTGAGCTCAAAATTCAATTG 11564 |||||| | |||| || ||| ||||| |||||| | || ||| |||| || Sbjct 4375 CATTTTTTGATAAACCTACTGGTTTAAGGGTTATTCAAACTTGAAAGTCAAATG 4428 Score = 84.2 bits (92), Expect = 3e-12 Identities = 165/234 (71%), Gaps = 10/234 (4%) Strand=Plus/Minus Query 14439 CAATTGAATTTTGAGCTCAAATAACTCTTAAGCCAATACATTTAGCGAAAAATCATAAGA 14498 || |||| ||| || | |||||| ||||| ||| || |||| | |||||| || | Sbjct 4428 CATTTGACTTTCAAGTTTGAATAACCCTTAAACCAGTAGGTTTATCAAAAAATGATTGCA 4369 Query 14499 TAACTTTTTTGTAGAGCGTTGAATTT---ACAATAAATATG-ATACAATTGATAACTTTT 14554 | ||||||||| ||||| ||||| |||| ||||||| ||| |||| | | ||| Sbjct 4368 GACATTTTTTGTATAGCGTCTAATTTGCTACAA-AAATATGTATAGAATTTTTTAGTTT- 4311 Query 14555 GATTTATTTATGGCAGAGTTATGGAATTCTAAAGCACAAATAAAATTTTTTCCATGTTAT 14614 ||| ||| || || ||| | ||||| ||||| ||| ||| | ||| | |||| || Sbjct 4310 GATA-ATTCATAGCCGAGAAAACAAATTCCAAAGCGGAAAAAAATTATTTGCTATGTAAT 4252 Query 14615 TTCTATGAGAAACTTAGATCAGAGC-GCG-GACAATCTTAAAGTTAATATTAAG 14666 || |||| ||| | ||| | | ||| ||| ||||||| ||||||||||| Sbjct 4251 TTGTATGTAAAATAGAAATCCGCGATGCGCGACC-TCTTAAACTTAATATTAAG 4199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 63242160073430