Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_006657.1
Length=19820
Score E
Sequences producing significant alignments: (Bits) Value
seq3536 104 3e-18
seq10171 89.7 7e-14
>seq3536
Length=61778
Score = 104 bits (114), Expect = 3e-18
Identities = 223/326 (68%), Gaps = 8/326 (2%)
Strand=Plus/Minus
Query 12224 GATATTCTTTCATCAAAGAATGCCATAGCTACAGTTTCTGGGTTTAAATACCACAAATGC 12283
|||| |||| |||||| ||||| | ||| ||| ||| || | || ||||| || |||
Sbjct 36032 GATACACTTTTATCAAAAAATGCTAAAGCCACACATTCAGGACTCAAGTACCATAAGTGC 35973
Query 12284 ATGCTAAATTTTTTCAATGCCACTTCAGATATTTTAGCATCTGTCGATTGATAATCAATA 12343
| ||||||| | ||||| ||| |||||| | |||||| | |||| || |
Sbjct 35972 CTTTTAAATTTGTGTAATGCAGCTTGAGATATATCAGCATCAATTTTTTGAAAAGAATCC 35913
Query 12344 AGTTCCTTTAAAAATGAT--AAATCATTATTTGGAGCTTCAGATGCGAGAGGACA-AGTG 12400
||| |||| ||| | | ||||| || | ||| |||| || || ||| || || |
Sbjct 35912 AGT--CTTTTCAAAAGCTGGAAATCTTTGTATGGTGCTTGAGCAGC-AGAAGAGGCAGAG 35856
Query 12401 AACCATGCTTTGATATACACTGTAGCAATAAAAACACAAATTTCAGAAACGGATTTGATT 12460
||||| | | ||| | || | ||||||||| ||| || | | | | ||| |
Sbjct 35855 AACCACATCTCAACATATATTGAAACAATAAAAATACATATATTACGTAAAGCTTTCCTA 35796
Query 12461 AATTTCACCGTCATTTTGAATTGTTTACGAAATAAAAATATTTTTATAGTA-TATATGGC 12519
||| || | || | |||| ||||||||||||||||||| || | ||||| ||
Sbjct 35795 TCTTTTACTGCCAAATCAAATTCACGTCGAAATAAAAATATTTTTA-AGCAGTATATAGC 35737
Query 12520 TTTTGCCATCCACCTAGCGTGGTGGA 12545
|||||||||||| || ||||||||||
Sbjct 35736 TTTTGCCATCCATCTCGCGTGGTGGA 35711
>seq10171
Length=21932
Score = 89.7 bits (98), Expect = 7e-14
Identities = 166/234 (71%), Gaps = 10/234 (4%)
Strand=Plus/Plus
Query 11337 CTTAATATTAACTTTAAGATTGTC-CGC-GCTCTGATCTAAGTTTCTCATAGAAATAACA 11394
||||||||||| ||||||| ||| ||| | | ||| | ||| |||| |||| |||
Sbjct 4199 CTTAATATTAAGTTTAAGA-GGTCGCGCATCGCGGATTTCTATTTTACATACAAATTACA 4257
Query 11395 TGGAAAAAATTTTATTTGTGCTTTAGAATTCCATAACTCTGCCATGAATAAATCAAAAGT 11454
| | ||| | ||| ||| ||||| ||||| | ||| || |||||| ||| ||| |
Sbjct 4258 TAGCAAATAATTTTTTTCCGCTTTGGAATTTGTTTTCTCGGCTATGAAT-TATC-AAACT 4315
Query 11455 TATCAATTGTAT-CATATTTATTGT---AAATTCAACGCTCTACAAAAAAGTTATCTTAT 11510
| |||| ||| ||||||| |||| ||||| ||||| ||||||||| | | ||
Sbjct 4316 AAAAAATTCTATACATATTT-TTGTAGCAAATTAGACGCTATACAAAAAATGTCTGCAAT 4374
Query 11511 GATTTTTCGCTAAATGTATTGGCTTAAGAGTTATTTGAGCTCAAAATTCAATTG 11564
|||||| | |||| || ||| ||||| |||||| | || ||| |||| ||
Sbjct 4375 CATTTTTTGATAAACCTACTGGTTTAAGGGTTATTCAAACTTGAAAGTCAAATG 4428
Score = 84.2 bits (92), Expect = 3e-12
Identities = 165/234 (71%), Gaps = 10/234 (4%)
Strand=Plus/Minus
Query 14439 CAATTGAATTTTGAGCTCAAATAACTCTTAAGCCAATACATTTAGCGAAAAATCATAAGA 14498
|| |||| ||| || | |||||| ||||| ||| || |||| | |||||| || |
Sbjct 4428 CATTTGACTTTCAAGTTTGAATAACCCTTAAACCAGTAGGTTTATCAAAAAATGATTGCA 4369
Query 14499 TAACTTTTTTGTAGAGCGTTGAATTT---ACAATAAATATG-ATACAATTGATAACTTTT 14554
| ||||||||| ||||| ||||| |||| ||||||| ||| |||| | | |||
Sbjct 4368 GACATTTTTTGTATAGCGTCTAATTTGCTACAA-AAATATGTATAGAATTTTTTAGTTT- 4311
Query 14555 GATTTATTTATGGCAGAGTTATGGAATTCTAAAGCACAAATAAAATTTTTTCCATGTTAT 14614
||| ||| || || ||| | ||||| ||||| ||| ||| | ||| | |||| ||
Sbjct 4310 GATA-ATTCATAGCCGAGAAAACAAATTCCAAAGCGGAAAAAAATTATTTGCTATGTAAT 4252
Query 14615 TTCTATGAGAAACTTAGATCAGAGC-GCG-GACAATCTTAAAGTTAATATTAAG 14666
|| |||| ||| | ||| | | ||| ||| ||||||| |||||||||||
Sbjct 4251 TTGTATGTAAAATAGAAATCCGCGATGCGCGACC-TCTTAAACTTAATATTAAG 4199
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 63242160073430
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |