Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq22 168 7e-37 seq59797 131 2e-25 >seq22 Length=933496 Score = 168 bits (186), Expect = 7e-37 Identities = 398/602 (66%), Gaps = 10/602 (2%) Strand=Plus/Minus Query 21310 ATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTAC 21369 |||||| |||||||| ||||| | | |||||| || |||||||| || ||||| || || Sbjct 329799 ATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATCAAATTCAC 329740 Query 21370 AGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTAT 21429 ||| | || | || || || || ||| || || |||||| |||| || | || Sbjct 329739 AGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGCAATGATTTCAAT 329680 Query 21430 TATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAATCACA 21489 || | |||| || | | | |||| ||||||| || |||||||| || Sbjct 329679 AATACGGTCCCTACTTGGCTTCTGAATGAGGTGTTGGAACATCAGGCAAGCAAAATCGCA 329620 Query 21490 ATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCC 21549 ||| || ||||| ||||| |||| |||||||| ||||| ||||| ||||||| || Sbjct 329619 ATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCAGGCATTAGGCC 329560 Query 21550 TCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAGAAAATGCCCTCAACG 21607 | || || | |||||| ||||| ||||| ||| || |||||||||||| ||||| Sbjct 329559 CCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACT--AAAGAAAATGCCTTCAACC 329502 Query 21608 GCAGCAAATGCAACTAATCGTTCACC---GTATGTAGATTCTTTATCCAATATCCATTTT 21664 || |||||||| | || ||||| || || | |||| | || | ||||| Sbjct 329501 GCGGCAAATGCTATTATACGTTCGCCAAAGTTGGCCGATT-TCGAT--GAAATCCACGCC 329445 Query 21665 TCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATGA 21724 |||||| | ||||| |||| | | || || |||||||| || || | | | Sbjct 329444 AGTGCCCAATCAGCCTTGCGCTTAACAGCAGGCATCGTCTCAATAGCATTGAACAAGTAA 329385 Query 21725 tttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGT 21784 | ||| | |||| | || || |||||||||||||| Sbjct 329384 TCCCTTTGCTTGCCATCCTTAATATATGTATCAATTAATATGCTGTACATTTCAGAATGC 329325 Query 21785 ATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTCG 21844 | ||| || || || || |||||||| || || || | ||||||| |||||| || Sbjct 329324 ACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGATTTGAACTTCT 329265 Query 21845 GAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCC 21904 || |||| | | ||||||||||| || || ||||| ||||||||| |||||| Sbjct 329264 TGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGGCAAAGAATGCC 329205 Query 21905 AA 21906 || Sbjct 329204 AA 329203 >seq59797 Length=1646 Score = 131 bits (144), Expect = 2e-25 Identities = 156/209 (75%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 21512 ATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATT 21571 |||||||||||||| ||||| ||||| ||||| || |||||||| || | ||| || || Sbjct 1634 ATTAATTCATTAGAGAATGTCAAACCAGGCATCAAACCTCTCTTCTTGAGCCAGAAAATG 1575 Query 21572 GACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCA 21631 || ||||||| || || |||||||| || || |||||||||||||| |||| || ||| Sbjct 1574 GATGCAAATGAACCAGAGAAGAAAATACCTTCTACGGCAGCAAATGCTACTAGTCTCTCA 1515 Query 21632 CCGTATGTAGATTCTTTATC--CAAT-ATCCATTTTTCTGCCCATTTTGCCTTTTCTTTA 21688 || || ||| |||| || || | ||||| || ||||||| | || || ||| Sbjct 1514 CCAAAT---GATGCTTTCTCGTCATTGATCCACTTAACTGCCCAGTCAGCTTTGCGCTTA 1458 Query 21689 ATACAATCAATTGTATCAATAGCTTTTAA 21717 || || ||| || |||||||| || || Sbjct 1457 ATGCATGGAATAGTTTCAATAGCGTTGAA 1429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531324551970800