Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq22 168 7e-37
seq59797 131 2e-25
>seq22
Length=933496
Score = 168 bits (186), Expect = 7e-37
Identities = 398/602 (66%), Gaps = 10/602 (2%)
Strand=Plus/Minus
Query 21310 ATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTAC 21369
|||||| |||||||| ||||| | | |||||| || |||||||| || ||||| || ||
Sbjct 329799 ATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATCAAATTCAC 329740
Query 21370 AGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTAT 21429
||| | || | || || || || ||| || || |||||| |||| || | ||
Sbjct 329739 AGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGCAATGATTTCAAT 329680
Query 21430 TATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAATCACA 21489
|| | |||| || | | | |||| ||||||| || |||||||| ||
Sbjct 329679 AATACGGTCCCTACTTGGCTTCTGAATGAGGTGTTGGAACATCAGGCAAGCAAAATCGCA 329620
Query 21490 ATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCC 21549
||| || ||||| ||||| |||| |||||||| ||||| ||||| ||||||| ||
Sbjct 329619 ATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCAGGCATTAGGCC 329560
Query 21550 TCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAGAAAATGCCCTCAACG 21607
| || || | |||||| ||||| ||||| ||| || |||||||||||| |||||
Sbjct 329559 CCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACT--AAAGAAAATGCCTTCAACC 329502
Query 21608 GCAGCAAATGCAACTAATCGTTCACC---GTATGTAGATTCTTTATCCAATATCCATTTT 21664
|| |||||||| | || ||||| || || | |||| | || | |||||
Sbjct 329501 GCGGCAAATGCTATTATACGTTCGCCAAAGTTGGCCGATT-TCGAT--GAAATCCACGCC 329445
Query 21665 TCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATGA 21724
|||||| | ||||| |||| | | || || |||||||| || || | | |
Sbjct 329444 AGTGCCCAATCAGCCTTGCGCTTAACAGCAGGCATCGTCTCAATAGCATTGAACAAGTAA 329385
Query 21725 tttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGT 21784
| ||| | |||| | || || ||||||||||||||
Sbjct 329384 TCCCTTTGCTTGCCATCCTTAATATATGTATCAATTAATATGCTGTACATTTCAGAATGC 329325
Query 21785 ATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTCG 21844
| ||| || || || || |||||||| || || || | ||||||| |||||| ||
Sbjct 329324 ACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGATTTGAACTTCT 329265
Query 21845 GAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCC 21904
|| |||| | | ||||||||||| || || ||||| ||||||||| ||||||
Sbjct 329264 TGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGGCAAAGAATGCC 329205
Query 21905 AA 21906
||
Sbjct 329204 AA 329203
>seq59797
Length=1646
Score = 131 bits (144), Expect = 2e-25
Identities = 156/209 (75%), Gaps = 6/209 (3%)
Strand=Plus/Minus
Query 21512 ATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATT 21571
|||||||||||||| ||||| ||||| ||||| || |||||||| || | ||| || ||
Sbjct 1634 ATTAATTCATTAGAGAATGTCAAACCAGGCATCAAACCTCTCTTCTTGAGCCAGAAAATG 1575
Query 21572 GACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCA 21631
|| ||||||| || || |||||||| || || |||||||||||||| |||| || |||
Sbjct 1574 GATGCAAATGAACCAGAGAAGAAAATACCTTCTACGGCAGCAAATGCTACTAGTCTCTCA 1515
Query 21632 CCGTATGTAGATTCTTTATC--CAAT-ATCCATTTTTCTGCCCATTTTGCCTTTTCTTTA 21688
|| || ||| |||| || || | ||||| || ||||||| | || || |||
Sbjct 1514 CCAAAT---GATGCTTTCTCGTCATTGATCCACTTAACTGCCCAGTCAGCTTTGCGCTTA 1458
Query 21689 ATACAATCAATTGTATCAATAGCTTTTAA 21717
|| || ||| || |||||||| || ||
Sbjct 1457 ATGCATGGAATAGTTTCAATAGCGTTGAA 1429
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531324551970800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |