Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq13731 576 2e-159
seq22 223 4e-53
seq40302 102 1e-16
seq32170 93.3 5e-14
>seq13731
Length=15303
Score = 576 bits (638), Expect = 2e-159
Identities = 1267/1879 (67%), Gaps = 26/1879 (1%)
Strand=Plus/Plus
Query 61985 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62044
|||||||| || ||||| || | | | || ||||| ||||||| |||||||||||
Sbjct 559 CTTGTCCACAGTAAATTGTATAGCATTTGCAGCAGGTTTGGTACGTAAGTAGTACATTCC 618
Query 62045 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62104
||||||||||| |||| || || ||||| ||| ||||||||| ||| | ||
Sbjct 619 TGTTTTTAGACCCGCTTTCCAGCCATAGAAATGTATAGAAGTTAGTTTGCCATAGTTTGG 678
Query 62105 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62164
||||| | ||| || || | ||||| ||||| |||||||| ||||||| ||||| ||
Sbjct 679 CTCTGCGACATGTATGTTAAACGATTGGCTTTGGTCGATGAATGCTCCCCGATCTGCTGC 738
Query 62165 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 62223
|||||| || || || | |||||||| | |||||| || | |||| ||| |
Sbjct 739 CATTTTAATTGAAGTTTTAACCGAGATTTCCCATACAGTTTTGTACAGATCGCG-AATGT 797
Query 62224 -CTTCTGGAAGGTTTGTATTC--TGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 62280
|| | | | || || ||| | || ||||| |||| | ||||| |||| || |
Sbjct 798 GCTGCGGTATGGATTCTATGCCTTGTATGGAGCCACGGCTAGTAATAATTTTATTTTTCA 857
Query 62281 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 62340
| ||||||| ||| || ||| || | | | | || | ||| |||| || ||||
Sbjct 858 TGTCATCATCCCACAAACCCAACTCAGTGAGATCGCGCAGCAAATGATGATTTACAACTT 917
Query 62341 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACT 62400
||||||| ||||| | ||| | || ||||| || ||| || || ||||| | ||||
Sbjct 918 GAAATTCGCCAGAGAGTACGCGACGTGTGTAGATGTTAGAAGTGTAGGGTTCGAATGACT 977
Query 62401 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62460
||||||| |||| ||||| |||||||| || || ||||||||||| | || | ||
Sbjct 978 CATTATTGCCCATGATTTGCGCAGTTGAAGCGGTGGGCATAGGTGCAAGCAGGAGGGAAT 1037
Query 62461 TTCTAAGACCGTA-TGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 62519
| |||| ||| | |||| | ||||| || || | | ||| ||||| || || |
Sbjct 1038 TCCTAACACCATGCTGTT-TAATTTTCTCCTTCAATTCTGTCCAGTTCCAGAGCTCAGTG 1096
Query 62520 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 62578
|| ||||||||| || || || | | || | ||| ||||
Sbjct 1097 GGCTTCTTATCCCACATGTCATATTGTAGAATTCCCTTGCTAACTGGAC-AGCCTTCATA 1155
Query 62579 TGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATA 62638
|| || || | || | |||||||| | ||||||||| || ||||||||||| |||||
Sbjct 1156 AGTTTCATAGGTACCGTATTTCTCAGCCAATTCACAACTAGCTTCTAATGCACCATAATA 1215
Query 62639 AATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATT 62698
|||||||||||| | || | ||||| | ||||| ||| || | |||||
Sbjct 1216 AATGGTTTCGAAAACCTGTTGATTTAAAAGGAATGCTTGTTCGCTTTCGTACGGATAGCG 1275
Query 62699 TAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 62758
| || |||| ||||| || || ||||| || || || ||||| || | |||||
Sbjct 1276 CATAAGTATAAGAGCGTCTGCAAAACCTTGTACGCCGATCCCGATTGGACGGTGTCTAAA 1335
Query 62759 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62818
|| || ||| || || || | || || | ||| || || || |||||||| | |||
Sbjct 1336 GTTTGATTTTTTTGCCTCGGGCAATGGGTAGTGATTTATTTCAATGATTTTATTCAAATT 1395
Query 62819 TC-TGACA-ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCT 62873
|| || || | | |||| || ||||| || | ||||| | | || |
Sbjct 1396 TCGTGTCACAGT--TTTGGTGACTTCCTTGAGCCGTTGGAAATCGTAAGTTTTTTCAGGT 1453
Query 62874 ATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 62933
| |||||||||||||| || | ||||| | || || || || ||||||| || |
Sbjct 1454 GTGACAAACATGTTCAAAGCGATTGATGCTAAGTTGCATACAGCCACCTCATCAGGTGCA 1513
Query 62934 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 62993
| ||||| | || |||||||| ||||| || || || || || || | |||||| |||
Sbjct 1514 GAATATTCGACAATTTCAGTGCATAGATTGCTGCATTTAATGGTGCCAATATTTTGCTGA 1573
Query 62994 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63053
||||| ||| | ||||| |||||||| || | || | || ||||| || || | |||
Sbjct 1574 TTACTTTTTCTATTACAGGCATCCTTGTACAACATATAAGGTGTACCGGTCTCCACCTGG 1633
Query 63054 GATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAG-ATTTGTATCTCCTTT 63111
||||| || || || ||| | |||| |||| || | | ||| | |||||
Sbjct 1634 GATTCAATGATGGCGAACCAAA-GACTTTGAGCTTTCACCGTCTTATTAGCGCGTCCTTC 1692
Query 63112 CTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAG 63171
|| |||| || |||||| ||| |||||| || || |||||||| | | || ||||
Sbjct 1693 CT-TTTCATACTTTGTATATAATTTTTCGAATTCTTCGCCCCAAACCTCATGTAAGCCAG 1751
Query 63172 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63231
|||||| || ||||||||||| ||||||||||||| | | | ||| |||| ||| || |
Sbjct 1752 GACATTTATGTGGACACATCAATGACCACTCTCCGTTAGCTTCCACACGTTCCATGAATA 1811
Query 63232 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 63291
||| || ||||| | ||| ||||| |||||||| || || || || ||||| ||||
Sbjct 1812 AATCTGGTATCCACAAAGCATAAAATAAATCTCTGGCTCGGTGCTCTTCTTTTCCAGTAT 1871
Query 63292 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 63351
|||| || | ||| | ||| | | |||||| | |||||| ||||||||||| ||||| |
Sbjct 1872 TCTTCTTCAAATCCAAAAACTCAAAAATATCTGCATGCCATGGTTCCAAGTAAATGGCAA 1931
Query 63352 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63411
| |||||||| ||| || |||||||||| ||| | || |||||| | || |
Sbjct 1932 AGGCGCCAGGCCGCTTGCCACCACCCTGATCTACGTAACGTGCAACGTTATTGAATACCC 1991
Query 63412 TCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGG 63471
||||||||| | | ||| ||||| | ||||| || || | ||| | || | |
Sbjct 1992 GCAACATTGGTACCAAACCATTTGAAGTGCCATTTGTGCCCGCGATTGCTGTGCCCTTTG 2051
Query 63472 CACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63529
| || || | | ||| ||| || || || || || || || ||||| || ||
Sbjct 2052 CTCGTATGCAATGGACATT--TAGTCCAATGCCACCAGCAGACTTGGAAATTAAAGCACA 2109
Query 63530 -TCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63588
| || | ||| | | ||||| || ||| |||| | ||| | | ||| ||||
Sbjct 2110 TTGGTGGGCAGATGT-AAATATACCATCAATGGAATCACCAGCCATAGTCAATAGGAAAC 2168
Query 63589 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63648
|| |||| ||| | | | ||| | ||| ||| | || ||||| || || || |
Sbjct 2169 AGGATGACAATTGCGGTTGGCGAGTGGCAGCAGCAAAGAGTGTTGGAGAGGCATGTGTGA 2228
Query 63649 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAA 63708
| | ||| ||||| | || || || |||||||| | || ||||| |||||
Sbjct 2229 AATAGCGTTCCGAAAGCAAGTTATAAGTTTCAATAGCGGCATCAATATCTTCACCATGAA 2288
Query 63709 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 63768
| || | | |||||||||||||||||||| || | |||||| || ||| || | |
Sbjct 2289 TACCAATGGAAACACGCATTAACATGTGCTGCGGACGTTCAACAATTTTGCCATTCAACT 2348
Query 63769 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 63828
| | || ||||| || | ||||| ||||||||||| ||||| ||| || || |
Sbjct 2349 TGAGTAAATAGGAACGCTCAAGTGTTTTGAAACCAAAATAATTGTAACCAAAATCACGGT 2408
Query 63829 CGTAAATAATAACCGAGTT 63847
| || || ||| |||| ||
Sbjct 2409 CATATATTATAGCCGAATT 2427
>seq22
Length=933496
Score = 223 bits (246), Expect = 4e-53
Identities = 482/712 (68%), Gaps = 13/712 (2%)
Strand=Plus/Minus
Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191
||| | ||| || || ||||| ||||| ||| | || |||||||| || || |
Sbjct 329805 CAAGCGATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATCAA 329746
Query 33192 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 33251
|| || || | || |||| | |||||||||||||| || || || | || ||
Sbjct 329745 ATTCACAGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGCAATGAT 329686
Query 33252 AGATCTAA--CGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCG 33309
||| |||| || ||| || || | | |||| ||||||| || ||
Sbjct 329685 TTCAATAATACGGTCCCT--ACTTGGCTTCTGAATGAGGTGTTGGAACATCAGGCAAGCA 329628
Query 33310 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 33369
|||||||| || | || ||||| || |||||| || || || || || | || |||
Sbjct 329627 AAATCGCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCAGGC 329568
Query 33370 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCT 33429
|||||||| || || || |||||||| || ||||| || ||| |||||| || |||
Sbjct 329567 ATTAGGCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATGCCT 329508
Query 33430 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTC-ATGTA-TCCAC 33486
|| || || ||||| || || | | || ||| | ||| | | || ||| | |||||
Sbjct 329507 TCAACCGCGGCAAATGCTATTATACGTTCGCCAAAGTTGGCCGATTTCGATGAAATCCAC 329448
Query 33487 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33546
| |||||||| ||||| || ||| ||||||||| || || ||||| || |
Sbjct 329447 GCCAGTGCCCAATCAGCCTTGCGCTTAACAGCAGGCATCGTCTCAATAGCATTGAACAAG 329388
Query 33547 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 33606
|| | ||| || | ||| |||| ||| ||||| || || | || |||||||| |||
Sbjct 329387 TAATCCCTTTGCTTGCCATCCTTAATATATGTATCAATTAATATGCTGTACATTTCAGAA 329328
Query 33607 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 33666
|| | || || ||||| || |||||||| ||||| || | ||||| || || || |||
Sbjct 329327 TGCACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGATTTGAACT 329268
Query 33667 TCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 33726
||| | || ||||| | || ||||||||||| || || || ||| ||||| ||
Sbjct 329267 TCTTGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGGCAAAGAAT 329208
Query 33727 GCCAATACATGTTTTATAAAAT---ATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 33783
||||| || || || |||| || | ||| |||| || ||||||||
Sbjct 329207 GCCAAAACGTGCGAAATGAAATGGCGTTCATTGTC-GGTG--AGACGCGCCCAATCATCC 329151
Query 33784 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835
|||||||| || | || || |||||||| ||||| || ||||| |||||||
Sbjct 329150 ATATCTTTGGAAAGGTCAACCTCTTCCACCGTCCAGAAGGATGCTTCTGCCT 329099
>seq40302
Length=2817
Score = 102 bits (112), Expect = 1e-16
Identities = 285/435 (66%), Gaps = 8/435 (2%)
Strand=Plus/Plus
Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362
||| || || ||||||||||| |||||||| | || || || || ||| || || ||
Sbjct 2231 ACAGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATCAGCTCATTGCTGAAGGTCAG 2290
Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422
|| ||||| ||||| ||||| || |||||||| ||| || || || || |||||
Sbjct 2291 GCCCGGCATCAGGCCGCGCTTCTTCAGCCAAAAGATGCTGGCAAAGGAGCCGCTGAAGAA 2350
Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT------C 33476
||| || || || || || ||||| | || | ||| || | ||||| || |
Sbjct 2351 GATGCCCTCCACGGCGGCGAAGGCGACGAGGCGCTCGGCAAAGGTGGCGCCGTTTTCGGC 2410
Query 33477 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536
|||| ||||| | |||||||| || || |||||||| | |||||
Sbjct 2411 GGCCGTCCAGGCCATGGCCCACTTCGCCTTCTTCGCGACGCAGGGCATCGTCTGGATGGC 2470
Query 33537 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33596
|| ||||| || | | | || | | || || | ||||| || ||
Sbjct 2471 GTTGAAGAGGTACTCGCGCTGGACGCGGTCGCTGATGTAGGTGTTGATCAGCAGGGAGTA 2530
Query 33597 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33656
||| ||||| || | ||| || ||||| ||||| || |||||||| || | ||||||||
Sbjct 2531 CATCTCCGAGTGGACGTTCTCGATGGCAATCTGGAAGCCGTAGAAGCAACGGGCCTCGGT 2590
Query 33657 AATCTGT-ACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGG 33715
| | || || || || || ||||| | || ||||| || || ||||| ||||
Sbjct 2591 GA-CGGTCACCTCGCGGATGAAGCGCTCCGCGAGGTTCTCATTGACGATGCCGTCGCTGG 2649
Query 33716 CTGCAAAAAACGCCA 33730
| || || || ||||
Sbjct 2650 CGGCGAAGAAGGCCA 2664
>seq32170
Length=3971
Score = 93.3 bits (102), Expect = 5e-14
Identities = 162/236 (69%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 63615 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63674
||||| || || | || || || ||||| || ||||| || || | |||||||||
Sbjct 3343 CCCGCGTTGAAGAGCGTCGGCGAGGCGTGGGTGAACCAGCGCTCCGACATCAGATTGTAC 3284
Query 63675 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63734
|||||||| || | ||| || ||| | ||||| || || ||||| ||||| | |||
Sbjct 3283 GTCTCAATGGCCGCGTCAATGTCCTCGTAGTGAATGCCCACGGCGACGCGCATCAGCATC 3224
Query 63735 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63794
||||| || | || || | ||| | || |||| || |||| | | ||
Sbjct 3223 TGCTGGGGGCGCTCCACCACCTTCCCGCCGATCTTCAGCAGGTAGCTGCGGTAGAGCGTC 3164
Query 63795 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63850
|| || ||||| |||||||| |||||| || ||||| || || ||||||||||
Sbjct 3163 TTGAAGCCAAAGTAGTTGTAGTGAAAGTCGCGATCGTAGATGATGGCCGAGTTGAG 3108
Score = 84.2 bits (92), Expect = 3e-11
Identities = 171/254 (67%), Gaps = 0/254 (0%)
Strand=Plus/Minus
Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227
|| || || || | ||| ||||||| |||||| | ||||| ||| || || ||||||
Sbjct 3867 CCGGGGCACTCGTGCGGGCACATCAGCGACCAGACGCCGTCCGCCTGGACGCGCTTCATA 3808
Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287
||||| || || | ||| | || || || || | || | | ||||| ||
Sbjct 3807 AAGAGGTCCGGCACCCACATGGCGTAGAAGAGGTCGCGGGCACGGAGCTCCTCCGAGCCG 3748
Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347
|| ||||| || ||||| ||| | | || || | ||||||||||| | ||| |||
Sbjct 3747 GTGTTCTTGCGCAGGTCGAGAAACTCGAAGATGTCGGCGTGCCACGGTTCGAGGTAGATG 3688
Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407
|| | | || || || ||||| || ||||| || | ||| | |||||||| || ||
Sbjct 3687 GCAAACGCCCCCGGGCGCTTGTTCCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGTAG 3628
Query 63408 ACTCTCAACATTGG 63421
|| | || ||| ||
Sbjct 3627 ACGCGCAGCATCGG 3614
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622272314577200
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