Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_007022.1
Length=172963
Score E
Sequences producing significant alignments: (Bits) Value
seq81708 120 3e-22
seq85787 100 3e-16
>seq81708
Length=1085
Score = 120 bits (132), Expect = 3e-22
Identities = 140/188 (74%), Gaps = 6/188 (3%)
Strand=Plus/Plus
Query 65588 TTAAAGGGATTGTGTGAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGC 65647
||| ||| || || || || || || || || || || || ||||| || || | ||
Sbjct 238 TTACAGGCTTTCGGTAAATGTACGAGTAATAACATCACGCTGCTGCTCTGGCGTCAGCGC 297
Query 65648 ATTAAAGCGTACGGCATAGCCGGAAACACGGATGGTTAGCTGGGGATATTTTTCTGGA-- 65705
|||||||| ||||||||||||||||| || ||||| | ||| ||||||||||| |||
Sbjct 298 GTTAAAGCGCACGGCATAGCCGGAAACGCGAATGGTCAACTGTGGATATTTTTCCGGATG 357
Query 65706 -TTAACGATTGCATCTTCCAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACC 65764
|| ||| |||||||||| || | || || || |||||||| || ||||||||
Sbjct 358 GTTCACG---GCATCTTCCAACGTTTCACGACGCAGTACGTTTACGTTCAGGTGCTGACC 414
Query 65765 ACCTTCAA 65772
||||||||
Sbjct 415 ACCTTCAA 422
>seq85787
Length=1013
Score = 100 bits (110), Expect = 3e-16
Identities = 137/190 (72%), Gaps = 1/190 (1%)
Strand=Plus/Plus
Query 65595 GATTGTGTGAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGCATTAAAG 65654
|| || |||||||| || || ||||| || || ||||| ||| | | || |||
Sbjct 596 GACTGGGTGAAAGTACGTGTAATTACATCTTTCTGCTGCTCTTTAGTGAGCGAGTTGAAG 655
Query 65655 CGTACGGCATAGCCGGAAACACGGATGGTTAGCTGGGGATATTTTTCTGGATTAACGATT 65714
||||| |||||||| ||||| |||||||| ||||| |||||||| || |||| | ||
Sbjct 656 CGTACAGCATAGCCAGAAACGCGGATGGTCAGCTGCGGATATTTCTCCGGATGTTCCATG 715
Query 65715 GCATCTTCCAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACCACCTTCAACA 65774
||||| ||| | | || | | || || ||||| ||||| ||||||||||| |
Sbjct 716 GCATCCAACAGCATCTCACGATTCATTACGTTGACGTTCAGATGTTGACCACCTTCGA-T 774
Query 65775 GTTGGCTCCG 65784
||||||| ||
Sbjct 775 GTTGGCTTCG 784
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 552754110543600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |