Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_007022.1 Length=172963 Score E Sequences producing significant alignments: (Bits) Value seq81708 120 3e-22 seq85787 100 3e-16 >seq81708 Length=1085 Score = 120 bits (132), Expect = 3e-22 Identities = 140/188 (74%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 65588 TTAAAGGGATTGTGTGAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGC 65647 ||| ||| || || || || || || || || || || || ||||| || || | || Sbjct 238 TTACAGGCTTTCGGTAAATGTACGAGTAATAACATCACGCTGCTGCTCTGGCGTCAGCGC 297 Query 65648 ATTAAAGCGTACGGCATAGCCGGAAACACGGATGGTTAGCTGGGGATATTTTTCTGGA-- 65705 |||||||| ||||||||||||||||| || ||||| | ||| ||||||||||| ||| Sbjct 298 GTTAAAGCGCACGGCATAGCCGGAAACGCGAATGGTCAACTGTGGATATTTTTCCGGATG 357 Query 65706 -TTAACGATTGCATCTTCCAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACC 65764 || ||| |||||||||| || | || || || |||||||| || |||||||| Sbjct 358 GTTCACG---GCATCTTCCAACGTTTCACGACGCAGTACGTTTACGTTCAGGTGCTGACC 414 Query 65765 ACCTTCAA 65772 |||||||| Sbjct 415 ACCTTCAA 422 >seq85787 Length=1013 Score = 100 bits (110), Expect = 3e-16 Identities = 137/190 (72%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 65595 GATTGTGTGAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGCATTAAAG 65654 || || |||||||| || || ||||| || || ||||| ||| | | || ||| Sbjct 596 GACTGGGTGAAAGTACGTGTAATTACATCTTTCTGCTGCTCTTTAGTGAGCGAGTTGAAG 655 Query 65655 CGTACGGCATAGCCGGAAACACGGATGGTTAGCTGGGGATATTTTTCTGGATTAACGATT 65714 ||||| |||||||| ||||| |||||||| ||||| |||||||| || |||| | || Sbjct 656 CGTACAGCATAGCCAGAAACGCGGATGGTCAGCTGCGGATATTTCTCCGGATGTTCCATG 715 Query 65715 GCATCTTCCAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACCACCTTCAACA 65774 ||||| ||| | | || | | || || ||||| ||||| ||||||||||| | Sbjct 716 GCATCCAACAGCATCTCACGATTCATTACGTTGACGTTCAGATGTTGACCACCTTCGA-T 774 Query 65775 GTTGGCTCCG 65784 ||||||| || Sbjct 775 GTTGGCTTCG 784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552754110543600