Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_007145.2 Length=37639 Score E Sequences producing significant alignments: (Bits) Value seq52999 349 8e-92 >seq52999 Length=1923 Score = 349 bits (386), Expect = 8e-92 Identities = 672/984 (68%), Gaps = 28/984 (3%) Strand=Plus/Plus Query 2941 GAAGGAGAAGAAGGACGGTGCGGACTACAAGGAAATCGACCTGCTCGGCCGCCAAGTCGA 3000 ||||||| ||||||| || ||||| |||||||||||||||||| | || || ||| Sbjct 122 GAAGGAGCAGAAGGAAGGAAAGGACTTCAAGGAAATCGACCTGCTGGCGCGGCAGTCCGA 181 Query 3001 GCGGCTCGCGCGCGTGCGCAAGTACGACGAGACGGGGAAGGAATCGGATCTGAACCCGAA 3060 ||| | || || | |||| | | | | || || ||| |||| ||||| ||||| Sbjct 182 GCGCCATGCCCGGATCGGCAAATTCAGCAATGGCGGCAATGAAGCGGACCTGAATCCGAA 241 Query 3061 GATTGCGTCGCGCAACGCCGGCCCGAAACGCCGTGCGCCCC--GTAACGAAA----TCAG 3114 | | | |||||| |||||| ||| ||||| | || ||| |||| Sbjct 242 CGTGGAGAACCGCAACAAGGGCCCG------CGTAAGCCCCCGGAAAAGAACCTGTTCAG 295 Query 3115 CGACGAACAGC---ACAAGC-GCATCATCGAAGCGTTCCGCGATTCGCTGTTCGACTATC 3170 |||||||||| | |||| ||| || | |||| || ||| |||||| ||| | Sbjct 296 CGACGAACAGATTGAGAAGCTGCAG----GAGGTTTTCCACGGCTCGATGTTCGGCTACC 351 Query 3171 AGAAAGTCTGGTATCGGAACGGCGATCAGCGCACG---CGCAACATCCTGAAATCGCGGC 3227 || |||| | ||| || || | | |||||| | ||||| ||||| | Sbjct 352 AGCGCCAGTGGTGGGAGGCCGGGAATAAGTACTCCGTCCGCAACCTGCTGAAGTCGCGCC 411 Query 3228 AGATCGGTGCGACGTGGTACTTCGCGCGCGAGGCGCTCGTCGACGCCCTCGACACCGACC 3287 |||| || || || | | || || ||||||||||| |||| || || ||||| | Sbjct 412 AGATTGGGGCCACCTTCTTTTTTGCCCGCGAGGCGCTGATCGATGCGCTGACCACCGGGC 471 Query 3288 GTAATCAAATCTTCCTGTCGGCGAGCAAGGCTCAGGCGCACGTCTTCAAGCAGTACATCA 3347 | ||||| || ||||| || || || ||||| |||||||||||||||||||||||||||| Sbjct 472 GCAATCAGATATTCCTTTCAGCCAGTAAGGCGCAGGCGCACGTCTTCAAGCAGTACATCA 531 Query 3348 CGCAGTTCGCGCGCGGGGCAGCCGACATCGAGCTCACGGGCGATCCGATTATCTTGCCGA 3407 | || || |||| || | || | || || | |||||| ||||| | | | Sbjct 532 TTGAATTTGCCCGCGAGGTGGACG---TAGACCTGAAGGGCGACCCGATGACGCTCAGTA 588 Query 3408 GCGGCGCGACGCTGTACTTCCTGGGCACGAACGCGCGCACCGCGCAGTCGTACCACGGCA 3467 ||| ||| ||||| ||||||||||| ||||| |||||||||||| || ||||||| Sbjct 589 ACGGTGCGTGCCTGTATTTCCTGGGCACCAACGCCCGCACCGCGCAGAGCTATCACGGCA 648 Query 3468 ACTTCTACTTCGACGAATACTTTTGGGTTCCGAAGTTCCGCGAGCTGAACAAGGTCGCCT 3527 | | ||| | || ||||| || ||| | |||||||| | || ||| | || || || | Sbjct 649 ATCTGTACCTGGATGAATATTTCTGGATCCCGAAGTTTCAGGAACTGCAGAAAGTGGCGT 708 Query 3528 CCGGCATGGCGATGCACAAGCGCTGGCGCAAGACGTACTTCAGCACGCCGTCCAGCGTCA 3587 ||||||||||| |||||||| |||||| | || ||||| ||| ||||||||| ||| Sbjct 709 CCGGCATGGCGCTGCACAAGAAGTGGCGCGAAACCTACTTTTCCACCCCGTCCAGCCTCA 768 Query 3588 CGCACGAGGCGTACGCGTTCTGGAGCGGCGCGCACGCGAACCGCGGCCGCGCCGCGGGCG 3647 ||||| || || |||||||| ||| |||| ||| ||||| ||| | | Sbjct 769 CGCACAGCGCCTATCCGTTCTGGTCCGGTTCGCAGTTCAACAAGGGCCGGGCCAAAGCTG 828 Query 3648 AGCGCATCCAGATCGACACGAGCCACGAGGCGCTCGTGCGCGGCATGTTGTGCGAGGACG 3707 | || | | || ||| ||||| || | || | ||| | ||||| |||| Sbjct 829 ACCGGGTTGATATTGACCTCAGCCATCAGTCACTGGCCGCCGGTCGCCTCTGCGAAGACG 888 Query 3708 CGCAGTGGCGGCAGATCGTGACCGTGCTCGATGCGATGGCGGGCGGCTGCGACCTGTTCG 3767 |||| || |||||||| ||||| |||||| || |||||||| |||||||| | Sbjct 889 GCCAGTTTCGCCAGATCGTCACCGTTGAAGATGCGGTGCGCGGCGGCTGTGACCTGTTTG 948 Query 3768 ACATCGACGAGCTGCGC-CGCGAGTACAGCGCCGAGGAATTCGCGAATCTGCTCATGTGC 3826 || | || |||||||| |||| |||||| | ||||| | | ||| ||||| |||||| Sbjct 949 ACCTGGAGCAGCTGCGCACGCG-CTACAGCCCGGAGGATTACCAGAACCTGCTGATGTGC 1007 Query 3827 CAGTTCATCGACGATTCGCTGTCGGTGTTCAAGCTGTCGGACCTGCAACGCTGCATGGTC 3886 || || |||||| | |||||| ||| ||||| | ||||| |||||||| Sbjct 1008 GTCTTTATGGACGATCTGGCGTCGGTATTCCAGCTGGCCATGCTGCAGAAATGCATGGTG 1067 Query 3887 GACTCGTGGGAAGAATGGGCGGAC 3910 ||| ||||||| ||| | ||| Sbjct 1068 GACAGCTGGGAAGTCTGGACCGAC 1091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120199362610540