Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq280 107 2e-18 seq180 100 3e-16 seq21746 87.8 2e-12 >seq280 Length=341618 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || ||||||| ||| | |||||| | || | || | Sbjct 105339 ATGCAAATCTTCGTGAAGACCCTAACTGGTAAAACCATCACCTTGGAGGTTGAGCCGTCA 105280 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| |||||| || |||||||| || ||||| |||||| Sbjct 105279 GACACCATCGAAAACGTCAAGGCCAAGATTCAAGATAAAGAAGGCATTCCTCCAGATCAA 105220 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | |||| || ||| |||||| | ||||| | | | | | ||||| ||| Sbjct 105219 CAACGTTTGATTTTCGCCGGTAAACAATTGGAAGACGGCCGCACCTTGTCGGACTACAAC 105160 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || ||||| ||||| |||||||| | ||| | || || Sbjct 105159 ATCCAAAAGGAGTCTACCCTCCATTTGGTCCTGCGTCTTCGCGGTGG 105113 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || ||||||| ||| | ||||| | || | || || | Sbjct 105795 ATGCAGATATTTGTGAAGACCCTAACTGGTAAAACCATCACGTTGGAGGTTGAGCCATCC 105736 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | |||||| ||||| ||||| || || || ||||| ||||| Sbjct 105735 GACACCATTGAGAACGTCAAAGCTAAGATCCAGGACAAGGAGGGTATTCCTCCAGATCAG 105676 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | || | || |||||| ||||||||||||| | | | | |||||| ||| Sbjct 105675 CAGCGTTTAATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACCTTGTCCGACTACAAC 105616 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || ||||| || ||||| |||| |||| ||| | || | ||||||| Sbjct 105615 ATCCAAAAGGAGTCTACGCTCCACTTGGTTCTGCGTCTGCGCGGAGGAA 105567 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || ||||||| ||| | ||||| | || | || || | Sbjct 114041 ATGCAGATATTTGTGAAGACCCTAACTGGTAAAACCATCACGTTGGAGGTTGAGCCATCC 113982 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | |||||| ||||| ||||| || || || ||||| ||||| Sbjct 113981 GACACCATTGAGAACGTCAAAGCTAAGATCCAGGACAAGGAGGGTATTCCTCCAGATCAG 113922 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | || | || |||||| ||||||||||||| | | | | |||||| ||| Sbjct 113921 CAGCGTTTAATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACCTTGTCCGACTACAAC 113862 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || ||||| || ||||| |||| |||| ||| | || | ||||||| Sbjct 113861 ATCCAAAAGGAGTCTACGCTCCACTTGGTTCTGCGTCTGCGCGGAGGAA 113813 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | ||||| ||| | |||||| | || | || | Sbjct 105111 ATGCAAATTTTCGTCAAGACTCTGACTGGCAAAACCATCACCTTGGAGGTTGAGCCGTCA 105052 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || ||||| ||||||||||| || || || |||||| Sbjct 105051 GACACCATCGAGAACGTTAAGGCCAAGATCCAGGACAAAGAAGGTATCCCACCAGATCAA 104992 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | || | || |||||| || |||||||||| | | | ||| |||||| Sbjct 104991 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGTACTTTGTCCGATTATAAC 104932 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || ||||| ||||| |||||||| | ||| | || || Sbjct 104931 ATCCAAAAGGAGTCTACCCTCCATTTGGTCCTGCGTCTTCGCGGTGG 104885 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || ||||||| ||| | |||||| | || | || || Sbjct 106023 ATGCAAATCTTCGTGAAGACCCTAACTGGCAAAACTATCACCTTGGAGGTTGAGCCATCA 105964 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || ||| ||||| || || ||||| || || || ||||| Sbjct 105963 GACACCATCGAAAATGTTAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAG 105904 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | || | || ||||||||| || ||||||| | | | | ||||| ||| Sbjct 105903 CAGCGTTTGATCTTCGCCGGCAAACAGCTTGAAGATGGCCGCACCTTGTCTGACTACAAC 105844 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || |||||| | ||| |||||||| | ||| | || || Sbjct 105843 ATCCAAAAGGAGTCTACTCTGCATTTGGTCCTGCGTCTTCGTGGTGG 105797 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || ||||||| ||| | |||||| | || | || || Sbjct 114269 ATGCAAATCTTCGTGAAGACCCTAACTGGCAAAACTATCACCTTGGAGGTTGAGCCATCA 114210 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || ||| ||||| || || ||||| || || || ||||| Sbjct 114209 GACACCATCGAAAATGTTAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAG 114150 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | || | || ||||||||| || ||||||| | | | | ||||| ||| Sbjct 114149 CAGCGTTTGATCTTCGCCGGCAAACAGCTTGAAGATGGCCGCACCTTGTCTGACTACAAC 114090 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || |||||| | ||| |||||||| | ||| | || || Sbjct 114089 ATCCAAAAGGAGTCTACTCTGCATTTGGTCCTGCGTCTTCGTGGTGG 114043 >seq180 Length=417715 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 71654 CAATTCGAGCATAATCAAACGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACGC 71713 ||||||||||| || || || ||||| || |||||||| || ||| || | Sbjct 110271 CAATTCGAGCAGGCCCACACACACGATGATCTTTGGAATGCGGCACAGGTTCAATTGGCA 110330 Query 71714 AATGAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGG 71773 ||||| || ||||| || || | ||||||||||||||||| |||||||| || || ||| Sbjct 110331 AATGAAGGCAAAATGCATGGTTTTCTACGCATGTACTGGGCAAAAAAGATACTTGAATGG 110390 Query 71774 ACTCAAACTCCCGAGCAGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTC 71833 | || || || || || | || | |||| || | || || | ||||||| | Sbjct 110391 GCCGCTACGCCGGAACAAGCCTTAGAAATTGCTATCTACTTGAATGACAAATACAGTTTA 110450 Query 71834 GACGGTCGCGATCCTAACGGTTATGTCGGT 71863 || || || ||||| ||||| ||||| ||| Sbjct 110451 GATGGACGGGATCCAAACGGCTATGTAGGT 110480 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 71655 AATTCGAGCATAATCAAACGCATGATGAACTATGGAATGCTGCTCAGCGACA---GCTAC 71711 |||||||||| | ||||| ||||| || ||||||||||| ||| || | | | Sbjct 107547 AATTCGAGCAGGCGCGTACGCACGATGATCTTTGGAATGCTGCACAGATTCAGTTGGTTC 107606 Query 71712 GCAATGAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGT 71771 || || || ||||| ||||||| || |||||||| ||||| |||||||| | || | Sbjct 107607 GC---GAAGGCAAAATGCACGGATTTCTGCGCATGTATTGGGCGAAAAAGATATTGGAAT 107663 Query 71772 GGACTCAAACTCCCGAGCAGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTC 71831 || || || ||||| ||| || || | ||| | | || |||| ||| ||| Sbjct 107664 GGTCTGCTACACCCGAAATGGCTCTAGAAACCGCCATTCTTTTTAATGATAAATATAGTT 107723 Query 71832 TCGACGGTCGCGATCCTAACGGTTATGTCGGT 71863 | || || || ||||| ||||| || || ||| Sbjct 107724 TAGATGGACGAGATCCGAACGGCTACGTAGGT 107755 >seq21746 Length=7614 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 26757 TAGTCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAA 26816 ||| | ||||||||||| | || || |||||| | || || || | ||||| | || Sbjct 2184 TAGACGAACAAAATGCAGATTTTCGTCAAAACACTTACGGGCAAGACCATCACTTTGGAG 2243 Query 26817 TTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATA 26876 | || | ||||| ||||| | ||||| || || || |||||||| ||| Sbjct 2244 GTCGAGCCTTCTGACACTATCGAAAATGTCAAGGCTAAAATCCAAGATAAAGAAGGTATA 2303 Query 26877 CCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTC 26936 || || ||||||||| | | |||| || |||||| ||| | ||||||| | | | | Sbjct 2304 CCACCAGATCAACAACGTTTGATTTTCGCCGGCAAGCAATTGGAAGATGGTCGTACTTTG 2363 Query 26937 AGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGT 26977 |||||| ||||||||||| || || || |||| |||| Sbjct 2364 TCCGACTACAACATTCAAAAGGAGTCAACCCTCCACTTGGT 2404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478143829122400